Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G080201 Glycine max HOM05D006745 ORTHO05D008449 1.6e-54 215.7 101 100.0
Glyma.02G164500 Glycine max HOM05D006745 ORTHO05D008449 5.5e-34 147.5 80 85.0
Phvul.002G105300 Phaseolus vulgaris HOM05D006745 ORTHO05D008449 4.5e-28 127.9 76 77.6
Glyma.01G163200 Glycine max HOM05D006745 ORTHO05D008449 5.9e-28 127.5 79 78.5
VMungo1215G1582 Vigna mungo HOM05D006745 ORTHO05D008449 6.5e-27 124.0 76 77.6
Ciclev10026368m.g Citrus clementina HOM05D006745 ORTHO05D008449 2.0e-20 102.4 73 68.5
arahy.Tifrunner.gnm1.ann1.DU2BQF Arachis hypogaea HOM05D006745 ORTHO05D008449 3.4e-20 101.7 61 73.8
arahy.Tifrunner.gnm1.ann1.EE1FTG Arachis hypogaea HOM05D006745 ORTHO05D008449 3.4e-20 101.7 61 73.8
CiPaw.07G062000 Carya illinoinensis HOM05D006745 ORTHO05D008449 5.9e-20 100.9 60 71.7
Eucgr.I02315 Eucalyptus grandis HOM05D006745 ORTHO05D008449 7.7e-20 100.5 61 73.8
Atru.chr3.895 Acer truncatum HOM05D006745 ORTHO05D008449 1.3e-19 99.8 71 62.0
Ca_24936_v3 Cicer arietinum L. HOM05D006745 ORTHO05D008449 1.3e-19 99.8 84 58.3
MD15G1238900 Malus domestica HOM05D006745 ORTHO05D008449 2.2e-19 99.0 65 67.7
TPR.G25110 Trifolium pratense HOM05D006745 ORTHO05D008449 2.9e-19 98.6 84 58.3
FAN26G1827 Fragaria x ananassa HOM05D006745 ORTHO05D008449 3.8e-19 98.2 63 69.8
Cpa.g.sc29.52 Carica papaya HOM05D006745 ORTHO05D008449 6.5e-19 97.4 70 60.0
Medtr5g022860 Medicago truncatula HOM05D006745 ORTHO05D008449 6.5e-19 97.4 88 55.7
PGR119G0426 Punica granatum HOM05D006745 ORTHO05D008449 8.5e-19 97.1 61 72.1
QL06p051396 Quercus lobata HOM05D006745 ORTHO05D008449 1.4e-18 96.3 69 65.2
Manes.01G150100 Manihot esculenta HOM05D006745 ORTHO05D008449 1.9e-18 95.9 81 58.0
Potri.005G109000 Populus trichocarpa HOM05D006745 ORTHO05D008449 1.9e-18 95.9 69 65.2
RcHm_v2.0_Chr2g0098641 Rosa chinensis HOM05D006745 ORTHO05D008449 1.9e-18 95.9 60 70.0
TWI73G1304 Tripterygium wilfordii HOM05D006745 ORTHO05D008449 2.5e-18 95.5 60 66.7
Prupe.7G173600 Prunus persica HOM05D006745 ORTHO05D008449 4.2e-18 94.7 75 57.3
FvH4_1g11230 Fragaria vesca HOM05D006745 ORTHO05D008449 5.5e-18 94.4 60 68.3
FAN19G0356 Fragaria x ananassa HOM05D006745 ORTHO05D008449 5.5e-18 94.4 60 68.3
Gohir.A11G041100 Gossypium hirsutum HOM05D006745 ORTHO05D008449 7.2e-18 94.0 69 65.2
Gohir.D11G044400 Gossypium hirsutum HOM05D006745 ORTHO05D008449 7.2e-18 94.0 69 65.2
Gorai.007G047700 Gossypium raimondii HOM05D006745 ORTHO05D008449 7.2e-18 94.0 69 65.2
ClCG01G020530 Citrullus lanatus HOM05D006745 ORTHO05D008449 9.4e-18 93.6 74 58.1
Lj2g0007566 Lotus japonicus HOM05D006745 ORTHO05D008449 9.4e-18 93.6 76 60.5
Haze_03682 Corylus avellana HOM05D006745 ORTHO05D008449 1.2e-17 93.2 60 66.7
FAN28G2493 Fragaria x ananassa HOM05D006745 ORTHO05D008449 2.7e-17 92.0 60 66.7
MELO3C007934.2 Cucumis melo HOM05D006745 ORTHO05D008449 6.1e-17 90.9 61 62.3
CsaV3_6G047410 Cucumis sativus L. HOM05D006745 ORTHO05D008449 6.1e-17 90.9 61 62.3
THA.LOC104817830 Tarenaya hassleriana HOM05D006745 ORTHO05D008449 6.1e-17 90.9 73 57.5
Thecc.01G012900 Theobroma cacao HOM05D006745 ORTHO05D008449 6.1e-17 90.9 69 63.8
Cfa007050 Carpinus fangiana HOM05D006745 ORTHO05D008449 1.0e-16 90.1 60 65.0
FAN23G2677 Fragaria x ananassa HOM05D006745 ORTHO05D008449 1.4e-16 89.7 60 65.0
Sed0008453 Sechium edule HOM05D006745 ORTHO05D008449 1.4e-16 89.7 58 62.1
Psat2g152400 Pisum sativum HOM05D006745 ORTHO05D008449 3.0e-16 88.6 84 51.2
Lalb_Chr09g0321491 Lupinus albus HOM05D006745 ORTHO05D008449 3.9e-16 88.2 72 61.1
BcaB07g31542 Brassica carinata HOM05D006745 ORTHO05D008449 5.1e-16 87.8 63 60.3
Carub.0002s0099 Capsella rubella HOM05D006745 ORTHO05D008449 5.1e-16 87.8 62 61.3
Duzib147G0156 Durio zibethinus HOM05D006745 ORTHO05D008449 6.7e-16 87.4 69 62.3
MSTRG.17961 Avicennia marina HOM05D006745 ORTHO05D008449 8.8e-16 87.0 60 68.3
ECA246G0119 Erigeron canadensis HOM05D006745 ORTHO05D008449 2.6e-15 85.5 66 59.1
Solyc02g061950.4 Solanum lycopersicum HOM05D006745 ORTHO05D008449 2.6e-15 85.5 61 62.3
Migut.N00678 Erythranthe guttata HOM05D006745 ORTHO05D008449 3.3e-15 85.1 60 66.7
Lj2A482T63 Lonicera japonica HOM05D006745 ORTHO05D008449 4.4e-15 84.7 61 65.6
SalBow3G1250 Salvia bowleyana HOM05D006745 ORTHO05D008449 4.4e-15 84.7 75 61.3
SEGI_40099 Sequoiadendron giganteum HOM05D006745 ORTHO05D008449 4.4e-15 84.7 60 56.7
CANSAT01G0215 Cannabis sativa HOM05D006745 ORTHO05D008449 5.7e-15 84.3 60 66.7
Actinidia28725 Actinidia chinensis HOM05D006745 ORTHO05D008449 7.4e-15 84.0 62 61.3
Ah.02g123330 Amaranthus hybridus HOM05D006745 ORTHO05D008449 7.4e-15 84.0 63 60.3
EL10Ac6g15168 Beta vulgaris HOM05D006745 ORTHO05D008449 7.4e-15 84.0 73 56.2
A09p13970 Brassica napus HOM05D006745 ORTHO05D008449 1.3e-14 83.2 64 56.2
BraA09t37044Z Brassica rapa HOM05D006745 ORTHO05D008449 1.3e-14 83.2 64 56.2
Nitab4.5_0002337g0130 Nicotiana tabacum HOM05D006745 ORTHO05D008449 1.3e-14 83.2 61 60.7
Oeu058205.1 Olea europaea HOM05D006745 ORTHO05D008449 1.3e-14 83.2 60 65.0
Oeu058207.1 Olea europaea HOM05D006745 ORTHO05D008449 1.3e-14 83.2 60 65.0
Sp2g00830 Schrenkiella parvula HOM05D006745 ORTHO05D008449 1.3e-14 83.2 62 59.7
PGSC0003DMG401023885 Solanum tuberosum HOM05D006745 ORTHO05D008449 1.3e-14 83.2 61 60.7
unitig_60.g25574 Utricularia gibba HOM05D006745 ORTHO05D008449 1.3e-14 83.2 61 60.7
DCAR_023133 Daucus carota HOM05D006745 ORTHO05D008449 1.7e-14 82.8 80 55.0
BcaC04g22678 Brassica carinata HOM05D006745 ORTHO05D008449 2.2e-14 82.4 63 58.7
BolC9t54579H Brassica oleracea HOM05D006745 ORTHO05D008449 2.2e-14 82.4 63 58.7
Nn6g31942 Nelumbo nucifera HOM05D006745 ORTHO05D008449 2.2e-14 82.4 65 56.9
Sc22g0002270 Simmondsia chinensis HOM05D006745 ORTHO05D008449 2.2e-14 82.4 72 52.8
SGA_v2.0_scaffold77G25309 Striga asiatica HOM05D006745 ORTHO05D008449 2.2e-14 82.4 73 56.2
vmacro18434 Vaccinium macrocarpon HOM05D006745 ORTHO05D008449 2.2e-14 82.4 61 62.3
Thhalv10023706m.g Eutrema salsugineum HOM05D006745 ORTHO05D008449 2.8e-14 82.0 62 59.7
Nitab4.5_0000188g0160 Nicotiana tabacum HOM05D006745 ORTHO05D008449 2.8e-14 82.0 61 57.4
AL2G11270 Arabidopsis lyrata HOM05D006745 ORTHO05D008449 4.8e-14 81.3 62 58.1
Sopen02g012910 Solanum pennellii HOM05D006745 ORTHO05D008449 4.8e-14 81.3 61 60.7
GSVIVG01007224001 Vitis vinifera HOM05D006745 ORTHO05D008449 4.8e-14 81.3 63 63.5
AT1G63855 Arabidopsis thaliana HOM05D006745 ORTHO05D008449 6.3e-14 80.9 61 57.4
Aa31LG2G1020 Aethionema arabicum HOM05D006745 ORTHO05D008449 1.4e-13 79.7 62 56.5
CAN.G576.2 Capsicum annuum HOM05D006745 ORTHO05D008449 1.8e-13 79.3 61 57.4
AUR62003702 Chenopodium quinoa HOM05D006745 ORTHO05D008449 1.8e-13 79.3 61 59.0
Lsat_1_v5_gn_3_71521 Lactuca sativa HOM05D006745 ORTHO05D008449 1.8e-13 79.3 61 59.0
BcaC04g22675 Brassica carinata HOM05D006745 ORTHO05D008449 5.3e-13 77.8 64 53.1
HanXRQChr16g0531741 Helianthus annuus HOM05D006745 ORTHO05D008449 7.0e-13 77.4 61 52.5
CSS0026839 Camellia sinensis var. sinensis HOM05D006745 ORTHO05D008449 1.2e-12 76.6 50 70.0
CSS0046970 Camellia sinensis var. sinensis HOM05D006745 ORTHO05D008449 1.2e-12 76.6 50 70.0
Rhsim08G0031100 Rhododendron simsii HOM05D006745 ORTHO05D008449 1.6e-12 76.3 56 60.7
Peaxi162Scf00439g00049 Petunia axillaris HOM05D006745 ORTHO05D008449 2.0e-12 75.9 60 56.7
Pp3c3_3170 Physcomitrium patens HOM05D006745 ORTHO05D008449 2.0e-12 75.9 60 53.3
Pp3c3_3178 Physcomitrium patens HOM05D006745 ORTHO05D008449 2.0e-12 75.9 60 53.3
Aqoxy6G02103 Aquilegia oxysepala HOM05D006745 ORTHO05D008449 3.5e-12 75.1 69 52.2
Os02g0120300 Oryza sativa ssp. japonica HOM05D006745 ORTHO05D008449 4.5e-12 74.7 62 53.2
Zm00001eb229980 Zea mays HOM05D006745 ORTHO05D008449 4.5e-12 74.7 62 50.0
SMO340G0117 Selaginella moellendorffii HOM05D006745 ORTHO05D008449 1.3e-11 73.2 60 51.7
PSO541G1183 Papaver somniferum HOM05D006745 ORTHO05D008449 2.2e-11 72.4 75 44.0
ATR0661G256 Amborella trichopoda HOM05D006745 ORTHO05D008449 6.5e-11 70.9 60 51.7
Cc07_g11200 Coffea canephora HOM05D006745 ORTHO05D008449 3.2e-10 68.6 35 74.3
Atru.chr3.884 Acer truncatum HOM05D006745 ORTHO05D008449 4.2e-10 68.2 35 77.1
CSS0012608 Camellia sinensis var. sinensis HOM05D006745 ORTHO05D008449 4.2e-10 68.2 44 63.6
HPP92_012950 Vanilla planifolia HOM05D006745 ORTHO05D008449 4.2e-10 68.2 62 48.4
PSO675G1483 Papaver somniferum HOM05D006745 ORTHO05D008449 9.4e-10 67.0 44 56.8
Mapoly0041s0084 Marchantia polymorpha HOM05D006745 ORTHO05D008449 1.2e-09 66.6 63 49.2
Sabra05G0089300 Salix brachista HOM05D006745 ORTHO05D008449 1.2e-09 66.6 45 62.2


User provided reference genes

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