Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G077200 Glycine max HOM05D003676 ORTHO05D004262 1.8e-169 599.4 347 100.0
Glyma.01G166300 Glycine max HOM05D003676 ORTHO05D004262 2.2e-143 512.7 350 82.0
Lalb_Chr05g0212401 Lupinus albus HOM05D003676 ORTHO05D004262 5.6e-86 322.0 361 57.6
Phvul.002G108800 Phaseolus vulgaris HOM05D003676 ORTHO05D004262 4.4e-83 312.4 334 61.1
arahy.Tifrunner.gnm1.ann1.CCI0LY Arachis hypogaea HOM05D003676 ORTHO05D004262 1.3e-79 300.8 376 59.8
Lj4g0000664 Lotus japonicus HOM05D003676 ORTHO05D004262 1.3e-79 300.8 365 55.1
Ca_25824_v3 Cicer arietinum L. HOM05D003676 ORTHO05D004262 3.0e-79 299.7 356 64.0
arahy.Tifrunner.gnm1.ann1.3LB61T Arachis hypogaea HOM05D003676 ORTHO05D004262 9.5e-78 294.7 373 59.5
MD15G1246000 Malus domestica HOM05D003676 ORTHO05D004262 9.2e-73 278.1 373 55.5
TPR.G18183 Trifolium pratense HOM05D003676 ORTHO05D004262 2.1e-72 276.9 351 57.3
Glyma.16G128800 Glycine max HOM05D003676 ORTHO05D004262 2.7e-72 276.6 370 53.5
MD02G1132500 Malus domestica HOM05D003676 ORTHO05D004262 4.6e-72 275.8 380 51.1
Psat4g099080 Pisum sativum HOM05D003676 ORTHO05D004262 7.8e-72 275.0 370 52.4
TPR.G30058 Trifolium pratense HOM05D003676 ORTHO05D004262 1.0e-71 274.6 368 55.4
Medtr8g075950 Medicago truncatula HOM05D003676 ORTHO05D004262 1.7e-71 273.9 364 58.8
QL06p032755 Quercus lobata HOM05D003676 ORTHO05D004262 3.3e-70 269.6 377 56.5
CiPaw.07G058500 Carya illinoinensis HOM05D003676 ORTHO05D004262 3.6e-69 266.2 382 57.9
Prupe.7G168100 Prunus persica HOM05D003676 ORTHO05D004262 3.6e-69 266.2 389 53.7
Potri.005G114100 Populus trichocarpa HOM05D003676 ORTHO05D004262 4.7e-69 265.8 382 57.6
VMungo0251G0225 Vigna mungo HOM05D003676 ORTHO05D004262 4.0e-68 262.7 369 56.4
Manes.01G145700 Manihot esculenta HOM05D003676 ORTHO05D004262 6.8e-68 261.9 367 55.6
Cfa006972 Carpinus fangiana HOM05D003676 ORTHO05D004262 8.9e-68 261.5 372 57.8
Sabra05G0093400 Salix brachista HOM05D003676 ORTHO05D004262 4.4e-67 259.2 376 52.9
Dinv40087 Davidia involucrata HOM05D003676 ORTHO05D004262 5.8e-67 258.8 378 51.3
Phvul.003G262100 Phaseolus vulgaris HOM05D003676 ORTHO05D004262 1.3e-66 257.7 362 55.0
RcHm_v2.0_Chr2g0099451 Rosa chinensis HOM05D003676 ORTHO05D004262 1.3e-66 257.7 376 48.1
Glyma.02G048700 Glycine max HOM05D003676 ORTHO05D004262 9.3e-65 251.5 367 54.5
CSS0022685 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 1.2e-64 251.1 374 50.0
FvH4_1g11840 Fragaria vesca HOM05D003676 ORTHO05D004262 1.2e-64 251.1 390 51.0
Ciclev10025949m.g Citrus clementina HOM05D003676 ORTHO05D004262 1.6e-64 250.8 372 50.3
Duzib187G0981 Durio zibethinus HOM05D003676 ORTHO05D004262 1.6e-64 250.8 377 53.8
Eucgr.I02350 Eucalyptus grandis HOM05D003676 ORTHO05D004262 2.1e-64 250.4 372 51.6
CSS0021991 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 2.7e-64 250.0 374 50.8
FAN26G1220 Fragaria x ananassa HOM05D003676 ORTHO05D004262 1.7e-63 247.3 372 50.3
FAN23G0443 Fragaria x ananassa HOM05D003676 ORTHO05D004262 2.3e-63 246.9 372 51.6
TAR381G0332 Trochodendron aralioides HOM05D003676 ORTHO05D004262 3.0e-63 246.5 370 53.8
Lj2A468T73 Lonicera japonica HOM05D003676 ORTHO05D004262 3.9e-63 246.1 380 51.3
FAN19G1818 Fragaria x ananassa HOM05D003676 ORTHO05D004262 6.6e-63 245.4 381 50.7
Cpa.g.sc6.251 Carica papaya HOM05D003676 ORTHO05D004262 3.3e-62 243.0 372 53.8
Dinv33627 Davidia involucrata HOM05D003676 ORTHO05D004262 1.6e-61 240.7 371 48.2
Hma1.2p1_0956F.1_g241320 Hydrangea macrophylla HOM05D003676 ORTHO05D004262 1.8e-60 237.3 402 47.0
MELO3C013767.2 Cucumis melo HOM05D003676 ORTHO05D004262 2.4e-60 236.9 378 50.5
TAR376G0994 Trochodendron aralioides HOM05D003676 ORTHO05D004262 4.0e-60 236.1 363 47.7
Psat2g154560 Pisum sativum HOM05D003676 ORTHO05D004262 6.9e-60 235.3 352 54.5
TAR628G0168 Trochodendron aralioides HOM05D003676 ORTHO05D004262 6.9e-60 235.3 359 52.9
CsaV3_3G000800 Cucumis sativus L. HOM05D003676 ORTHO05D004262 1.5e-59 234.2 375 50.9
Hund16490 Selenicereus undatus HOM05D003676 ORTHO05D004262 2.0e-59 233.8 391 47.6
Actinidia17444 Actinidia chinensis HOM05D003676 ORTHO05D004262 3.4e-59 233.0 381 47.5
CSS0018215 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 4.4e-59 232.6 375 54.1
Cc07_g10720 Coffea canephora HOM05D003676 ORTHO05D004262 4.4e-59 232.6 382 49.7
Sopen02g028680 Solanum pennellii HOM05D003676 ORTHO05D004262 5.8e-59 232.3 368 50.0
Nn5g30150 Nelumbo nucifera HOM05D003676 ORTHO05D004262 7.6e-59 231.9 381 47.5
MSTRG.2714 Avicennia marina HOM05D003676 ORTHO05D004262 1.3e-58 231.1 377 51.7
Thecc.01G019000 Theobroma cacao HOM05D003676 ORTHO05D004262 1.7e-58 230.7 375 50.9
ClCG10G000750 Citrullus lanatus HOM05D003676 ORTHO05D004262 1.9e-57 227.3 377 51.2
Solyc02g083890.4 Solanum lycopersicum HOM05D003676 ORTHO05D004262 1.9e-57 227.3 368 47.6
Atru.chr3.798 Acer truncatum HOM05D003676 ORTHO05D004262 3.2e-57 226.5 391 46.8
Rhsim10G0212200 Rhododendron simsii HOM05D003676 ORTHO05D004262 3.2e-57 226.5 383 51.2
Medtr5g022010 Medicago truncatula HOM05D003676 ORTHO05D004262 5.4e-57 225.7 345 51.6
Manes.02G104500 Manihot esculenta HOM05D003676 ORTHO05D004262 1.6e-56 224.2 336 52.7
Sed0017342 Sechium edule HOM05D003676 ORTHO05D004262 2.1e-56 223.8 377 47.7
AUR62029464 Chenopodium quinoa HOM05D003676 ORTHO05D004262 2.7e-56 223.4 349 44.4
CANSAT01G0038 Cannabis sativa HOM05D003676 ORTHO05D004262 3.5e-56 223.0 375 50.7
Duzib264G0036 Durio zibethinus HOM05D003676 ORTHO05D004262 7.9e-56 221.9 374 48.9
DCAR_016607 Daucus carota HOM05D003676 ORTHO05D004262 1.0e-55 221.5 372 51.6
Lalb_Chr09g0321731 Lupinus albus HOM05D003676 ORTHO05D004262 1.0e-55 221.5 349 47.6
Ca_22374_v3 Cicer arietinum L. HOM05D003676 ORTHO05D004262 1.3e-55 221.1 370 45.9
Gohir.A11G175400 Gossypium hirsutum HOM05D003676 ORTHO05D004262 1.3e-55 221.1 359 46.2
Nn1g05889 Nelumbo nucifera HOM05D003676 ORTHO05D004262 1.7e-55 220.7 360 53.3
vmacro18414 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 1.7e-55 220.7 376 49.2
Nitab4.5_0003382g0020 Nicotiana tabacum HOM05D003676 ORTHO05D004262 6.6e-55 218.8 368 51.6
Nitab4.5_0005660g0010 Nicotiana tabacum HOM05D003676 ORTHO05D004262 6.6e-55 218.8 367 51.5
CAN.G1671.14 Capsicum annuum HOM05D003676 ORTHO05D004262 4.3e-54 216.1 379 51.2
Hund14045 Selenicereus undatus HOM05D003676 ORTHO05D004262 4.3e-54 216.1 379 44.3
FAN28G1902 Fragaria x ananassa HOM05D003676 ORTHO05D004262 7.3e-54 215.3 372 50.5
Peaxi162Scf00083g00320 Petunia axillaris HOM05D003676 ORTHO05D004262 7.3e-54 215.3 371 47.7
PGR119G1864 Punica granatum HOM05D003676 ORTHO05D004262 7.3e-54 215.3 391 49.6
PGSC0003DMG400003640 Solanum tuberosum HOM05D003676 ORTHO05D004262 1.6e-53 214.2 364 45.9
Gohir.D11G182900 Gossypium hirsutum HOM05D003676 ORTHO05D004262 4.8e-53 212.6 366 45.1
Actinidia30997 Actinidia chinensis HOM05D003676 ORTHO05D004262 1.1e-52 211.5 352 45.2
AUR62003369 Chenopodium quinoa HOM05D003676 ORTHO05D004262 4.0e-52 209.5 347 43.8
Gorai.007G194900 Gossypium raimondii HOM05D003676 ORTHO05D004262 9.0e-52 208.4 366 45.1
Gohir.D12G060000 Gossypium hirsutum HOM05D003676 ORTHO05D004262 7.6e-51 205.3 371 51.5
Gorai.008G063100 Gossypium raimondii HOM05D003676 ORTHO05D004262 9.9e-51 204.9 371 50.4
Aa31LG1G14730 Aethionema arabicum HOM05D003676 ORTHO05D004262 8.4e-50 201.8 356 46.6
PSO541G5658 Papaver somniferum HOM05D003676 ORTHO05D004262 1.4e-49 201.1 359 46.5
Gohir.A12G059600 Gossypium hirsutum HOM05D003676 ORTHO05D004262 1.9e-49 200.7 370 50.8
Gohir.A02G170700 Gossypium hirsutum HOM05D003676 ORTHO05D004262 2.4e-49 200.3 365 45.2
MBI05_g37447_MAGBIO Magnolia biondii HOM05D003676 ORTHO05D004262 4.2e-49 199.5 370 42.2
Sc07g0000980 Simmondsia chinensis HOM05D003676 ORTHO05D004262 4.2e-49 199.5 320 51.6
Lj4A218T52 Lonicera japonica HOM05D003676 ORTHO05D004262 9.3e-49 198.4 361 45.4
Rhsim08G0033700 Rhododendron simsii HOM05D003676 ORTHO05D004262 9.3e-49 198.4 385 45.5
Gohir.D03G009400 Gossypium hirsutum HOM05D003676 ORTHO05D004262 2.7e-48 196.8 372 44.9
PSO675G7127 Papaver somniferum HOM05D003676 ORTHO05D004262 3.5e-48 196.4 364 45.9
Hma1.2p1_0258F.1_g104145 Hydrangea macrophylla HOM05D003676 ORTHO05D004262 3.9e-47 193.0 407 42.8
Aqoxy6G02292 Aquilegia oxysepala HOM05D003676 ORTHO05D004262 8.7e-47 191.8 374 40.9
Gorai.003G009600 Gossypium raimondii HOM05D003676 ORTHO05D004262 2.5e-46 190.3 378 43.7
AT5G66230 Arabidopsis thaliana HOM05D003676 ORTHO05D003783 4.3e-46 189.5 359 48.7
TWI09G1351 Tripterygium wilfordii HOM05D003676 ORTHO05D004262 7.4e-46 188.7 297 53.2
Potri.007G057800 Populus trichocarpa HOM05D003676 ORTHO05D004262 1.6e-45 187.6 364 50.3
Ah.03g148760 Amaranthus hybridus HOM05D003676 ORTHO05D004262 2.1e-45 187.2 339 44.0
CARHR281500 Cardamine hirsuta HOM05D003676 ORTHO05D004262 2.1e-45 187.2 364 44.0
SalBow3G1193 Salvia bowleyana HOM05D003676 ORTHO05D004262 2.1e-45 187.2 325 50.8
Actinidia22976 Actinidia chinensis HOM05D003676 ORTHO05D004262 2.8e-45 186.8 291 50.9
TWI53G0168 Tripterygium wilfordii HOM05D003676 ORTHO05D004262 2.8e-45 186.8 374 49.5
SGA_v2.0_scaffold78G25382 Striga asiatica HOM05D003676 ORTHO05D004262 1.4e-44 184.5 352 42.6
Thhalv10004614m.g Eutrema salsugineum HOM05D003676 ORTHO05D004262 6.9e-44 182.2 363 41.6
THA.LOC104819178 Tarenaya hassleriana HOM05D003676 ORTHO05D004262 9.0e-44 181.8 370 40.5
COL.COLO4_21910 Corchorus olitorius HOM05D003676 ORTHO05D004262 5.8e-43 179.1 384 41.1
MBI05_g30743_MAGBIO Magnolia biondii HOM05D003676 ORTHO05D004262 7.6e-43 178.7 369 38.8
Oeu012589.1 Olea europaea HOM05D003676 ORTHO05D004262 1.0e-42 178.3 337 47.5
A09p10110 Brassica napus HOM05D003676 ORTHO05D004262 2.9e-42 176.8 367 46.9
BraA09t36654Z Brassica rapa HOM05D003676 ORTHO05D004262 2.5e-41 173.7 364 46.4
ECA232G1625 Erigeron canadensis HOM05D003676 ORTHO05D004262 5.5e-41 172.6 374 38.2
Gohir.D11G183000 Gossypium hirsutum HOM05D003676 ORTHO05D004262 2.1e-40 170.6 324 42.0
Oeu048461.1 Olea europaea HOM05D003676 ORTHO05D004262 2.7e-40 170.2 335 49.6
C09p11980 Brassica napus HOM05D003676 ORTHO05D004262 4.6e-40 169.5 364 46.4
Oeu063192.2 Olea europaea HOM05D003676 ORTHO05D004262 6.0e-40 169.1 339 45.1
Gorai.007G195000 Gossypium raimondii HOM05D003676 ORTHO05D004262 7.9e-40 168.7 324 41.4
Carub.0008s2827 Capsella rubella HOM05D003676 ORTHO05D004262 1.8e-39 167.5 376 42.3
Sp2g30470 Schrenkiella parvula HOM05D003676 ORTHO05D004262 3.9e-39 166.4 365 44.9
unitig_736.g22721 Utricularia gibba HOM05D003676 ORTHO05D004262 3.9e-39 166.4 350 45.1
BolC9t54086H Brassica oleracea HOM05D003676 ORTHO05D004262 5.1e-39 166.0 370 45.7
GSVIVG01018782001 Vitis vinifera HOM05D003676 ORTHO05D004262 5.1e-39 166.0 253 49.4
Sc16g0002190 Simmondsia chinensis HOM05D003676 ORTHO05D004262 1.8e-36 157.5 365 38.1
AL5G31630 Arabidopsis lyrata HOM05D003676 ORTHO05D004262 2.4e-36 157.1 357 36.1
HPP92_020902 Vanilla planifolia HOM05D003676 ORTHO05D004262 2.0e-35 154.1 370 40.0
Sp5g10990 Schrenkiella parvula HOM05D003676 ORTHO05D004262 5.5e-33 146.0 367 34.3
unitig_899.g14713 Utricularia gibba HOM05D003676 ORTHO05D004262 1.8e-31 141.0 297 37.7
SHI32179 Sapria himalayana HOM05D003676 ORTHO05D004262 3.9e-31 139.8 350 36.0
Nn1g05888 Nelumbo nucifera HOM05D003676 ORTHO05D004262 1.1e-30 138.3 356 32.9
Zm00001eb224920 Zea mays HOM05D003676 ORTHO05D004262 1.5e-30 137.9 384 34.6
Haze_03763 Corylus avellana HOM05D003676 ORTHO05D004262 5.7e-30 136.0 184 57.1
HanXRQChr15g0487251 Helianthus annuus HOM05D003676 ORTHO05D004262 5.7e-30 136.0 348 37.6
CDE05G2608 Ceratophyllum demersum HOM05D003676 ORTHO05D004262 1.3e-29 134.8 346 34.1
HanXRQChr09g0256601 Helianthus annuus HOM05D003676 ORTHO05D004262 2.2e-29 134.0 329 38.0
Lsat_1_v5_gn_3_74521 Lactuca sativa HOM05D003676 ORTHO05D004262 2.2e-29 134.0 337 36.5
SEGI_09532 Sequoiadendron giganteum HOM05D003676 ORTHO05D004262 2.8e-29 133.7 338 36.7
SEGI_21114 Sequoiadendron giganteum HOM05D003676 ORTHO05D004262 2.8e-29 133.7 338 36.7
Migut.H01153 Erythranthe guttata HOM05D003676 ORTHO05D004262 8.2e-29 132.1 349 39.3
AL8G45300 Arabidopsis lyrata HOM05D003676 ORTHO05D004262 4.5e-27 126.3 206 49.5
Lsat_1_v5_gn_4_146360 Lactuca sativa HOM05D003676 ORTHO05D004262 7.7e-27 125.6 332 35.8
Zm00001eb024930 Zea mays HOM05D003676 ORTHO05D004262 5.0e-26 122.9 369 38.2
Os10g0577400 Oryza sativa ssp. japonica HOM05D003676 ORTHO05D004262 3.2e-25 120.2 385 36.6
AT3G51230 Arabidopsis thaliana HOM05D003676 ORTHO05D004262 9.4e-25 118.6 197 43.7
CARHR160810 Cardamine hirsuta HOM05D003676 ORTHO05D004262 2.7e-24 117.1 201 43.3
CDE05G0776 Ceratophyllum demersum HOM05D003676 ORTHO05D004262 4.6e-24 116.3 250 39.6
ATR0149G006 Amborella trichopoda HOM05D003676 ORTHO05D004262 3.3e-22 110.2 385 37.4
BcaC09g50089 Brassica carinata HOM05D003676 ORTHO05D004262 2.8e-21 107.1 212 42.5
C01p29220 Brassica napus HOM05D003676 ORTHO05D004262 2.8e-21 107.1 212 42.5
Carub.0005s1760 Capsella rubella HOM05D003676 ORTHO05D004262 8.2e-21 105.5 208 41.3
A01p23560 Brassica napus HOM05D003676 ORTHO05D004262 1.1e-20 105.1 204 42.6
BraA01t02262Z Brassica rapa HOM05D003676 ORTHO05D004262 1.1e-20 105.1 204 42.6
Atru.chr1.3640 Acer truncatum HOM05D003676 ORTHO05D004262 4.1e-20 103.2 129 58.1
BcaNung00393 Brassica carinata HOM05D003676 ORTHO05D004262 5.3e-20 102.8 238 39.1
Solyc02g062170.3 Solanum lycopersicum HOM05D003676 ORTHO05D004262 1.2e-19 101.7 286 35.3
PGSC0003DMG400023891 Solanum tuberosum HOM05D003676 ORTHO05D004262 1.5e-19 101.3 328 33.8
DCAR_025998 Daucus carota HOM05D003676 ORTHO05D004262 2.0e-19 100.9 253 38.7
Sopen02g013140 Solanum pennellii HOM05D003676 ORTHO05D004262 4.5e-19 99.8 286 34.6
vmacro23249 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 7.7e-19 99.0 314 42.7
vmacro23473 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 7.7e-19 99.0 314 42.7
ECA246G1385 Erigeron canadensis HOM05D003676 ORTHO05D004262 2.2e-18 97.4 233 35.2
RcHm_v2.0_Chr6g0272671 Rosa chinensis HOM05D003676 ORTHO05D004262 3.8e-18 96.7 144 46.5
BcaNung04494 Brassica carinata HOM05D003676 ORTHO05D004262 1.4e-17 94.7 264 42.0
Nitab4.5_0002337g0030 Nicotiana tabacum HOM05D003676 ORTHO05D004262 3.2e-17 93.6 194 43.8
Nitab4.5_0000188g0110 Nicotiana tabacum HOM05D003676 ORTHO05D004262 1.2e-16 91.7 223 43.0
Gorai.010G060700 Gossypium raimondii HOM05D003676 ORTHO05D004262 1.6e-16 91.3 183 42.1
Atru.chr1.3647 Acer truncatum HOM05D003676 ORTHO05D004262 2.6e-14 84.0 322 31.1
vmacro22131 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 2.6e-14 84.0 319 38.9
SEGI_24904 Sequoiadendron giganteum HOM05D003676 ORTHO05D004262 4.5e-11 73.2 277 28.9
Pp3c2_17070 Physcomitrium patens HOM05D032375 ORTHO05D030105 7.7e-11 72.4 77 48.1
HanXRQChr16g0531461 Helianthus annuus HOM05D003676 ORTHO05D004262 1.1e-09 68.6 164 34.1
SMO340G0107 Selaginella moellendorffii HOM05D003676 ORTHO05D004262 4.2e-09 66.6 293 28.0
Nn8g38913 Nelumbo nucifera HOM05D003676 ORTHO05D004262 1.8e-07 61.2 68 48.5
Zm00001eb167470 Zea mays HOM05D003676 ORTHO05D004262 4.4e-06 56.6 56 50.0


User provided reference genes

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