Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G074800 Glycine max HOM05D005603 ORTHO05D006944 1.5e-244 849.0 405 100.0
Glyma.01G168600 Glycine max HOM05D005603 ORTHO05D006944 7.9e-241 836.6 405 98.3
Ca_24898_v3 Cicer arietinum L. HOM05D005603 ORTHO05D006944 3.1e-237 824.7 405 96.0
Phvul.002G111500 Phaseolus vulgaris HOM05D005603 ORTHO05D006944 4.0e-237 824.3 405 96.3
TPR.G2333 Trifolium pratense HOM05D005603 ORTHO05D006944 2.6e-236 821.6 405 95.6
Medtr5g021520 Medicago truncatula HOM05D005603 ORTHO05D006944 7.6e-236 820.1 406 95.8
Psat2g155920 Pisum sativum HOM05D005603 ORTHO05D006944 2.9e-235 818.1 405 95.8
VMungo1215G2039 Vigna mungo HOM05D005603 ORTHO05D006944 2.9e-235 818.1 404 95.5
arahy.Tifrunner.gnm1.ann1.V913IW Arachis hypogaea HOM05D005603 ORTHO05D006944 1.3e-232 809.3 405 94.6
Lj2g0023828 Lotus japonicus HOM05D005603 ORTHO05D006944 1.3e-232 809.3 410 94.6
arahy.Tifrunner.gnm1.ann1.8YZ064 Arachis hypogaea HOM05D005603 ORTHO05D006944 2.6e-228 795.0 434 88.5
COL.COLO4_21962 Corchorus olitorius HOM05D005603 ORTHO05D006944 3.0e-224 781.6 405 91.1
Prupe.7G165200 Prunus persica HOM05D005603 ORTHO05D006944 2.5e-223 778.5 405 90.1
QL06p033966 Quercus lobata HOM05D005603 ORTHO05D006944 2.8e-222 775.0 404 91.1
Eucgr.I02369 Eucalyptus grandis HOM05D005603 ORTHO05D006944 8.2e-222 773.5 405 90.1
MD15G1249000 Malus domestica HOM05D005603 ORTHO05D006944 1.5e-220 769.2 404 89.1
Gohir.D03G010900 Gossypium hirsutum HOM05D005603 ORTHO05D006944 2.0e-220 768.8 405 89.4
Gorai.003G011300 Gossypium raimondii HOM05D005603 ORTHO05D006944 2.0e-220 768.8 405 89.4
Gohir.A02G169100 Gossypium hirsutum HOM05D005603 ORTHO05D006944 3.4e-220 768.1 405 89.1
Thecc.01G023100 Theobroma cacao HOM05D005603 ORTHO05D006944 4.5e-220 767.7 405 89.6
CiPaw.07G056000 Carya illinoinensis HOM05D005603 ORTHO05D006944 1.7e-219 765.8 406 89.9
FvH4_1g12160 Fragaria vesca HOM05D005603 ORTHO05D006944 5.0e-219 764.2 405 88.1
CSS0040106 Camellia sinensis var. sinensis HOM05D005603 ORTHO05D006944 6.5e-219 763.8 405 89.1
Sopen02g029190 Solanum pennellii HOM05D005603 ORTHO05D006944 5.5e-218 760.8 404 87.9
Manes.02G101300 Manihot esculenta HOM05D005603 ORTHO05D006944 1.6e-217 759.2 403 89.6
Aqoxy5G01490 Aquilegia oxysepala HOM05D005603 ORTHO05D006944 2.1e-217 758.8 403 88.1
Hma1.2p1_0743F.1_g211450 Hydrangea macrophylla HOM05D005603 ORTHO05D006944 2.3e-216 755.4 416 86.5
TWI09G0997 Tripterygium wilfordii HOM05D005603 ORTHO05D006944 3.0e-216 755.0 404 87.6
MD02G1111100 Malus domestica HOM05D005603 ORTHO05D006944 3.9e-216 754.6 404 87.6
MELO3C007885.2 Cucumis melo HOM05D005603 ORTHO05D006944 8.7e-216 753.4 405 87.2
CsaV3_6G046890 Cucumis sativus L. HOM05D005603 ORTHO05D006944 8.7e-216 753.4 405 87.4
Nn5g29214 Nelumbo nucifera HOM05D005603 ORTHO05D006944 1.9e-215 752.3 405 86.4
CANSAT01G2298 Cannabis sativa HOM05D005603 ORTHO05D006944 2.5e-215 751.9 402 88.1
ClCG01G020120 Citrullus lanatus HOM05D005603 ORTHO05D006944 2.5e-215 751.9 404 87.4
Nitab4.5_0008176g0030 Nicotiana tabacum HOM05D005603 ORTHO05D006944 2.5e-215 751.9 419 84.5
RcHm_v2.0_Chr2g0099911 Rosa chinensis HOM05D005603 ORTHO05D006944 2.5e-215 751.9 405 87.9
Sc03g0003440 Simmondsia chinensis HOM05D005603 ORTHO05D006944 1.3e-214 749.6 403 86.8
HanXRQChr16g0531111 Helianthus annuus HOM05D005603 ORTHO05D006944 2.2e-214 748.8 403 87.1
Sed0002868 Sechium edule HOM05D005603 ORTHO05D006944 4.8e-214 747.7 404 87.1
SGA_v2.0_scaffold47G17673 Striga asiatica HOM05D005603 ORTHO05D006944 4.1e-213 744.6 410 86.1
Potri.005G117200 Populus trichocarpa HOM05D005603 ORTHO05D006944 6.9e-213 743.8 403 87.8
TAR628G0819 Trochodendron aralioides HOM05D005603 ORTHO05D006944 1.2e-212 743.0 404 86.9
GSVIVG01018824001 Vitis vinifera HOM05D005603 ORTHO05D006944 1.2e-212 743.0 392 89.8
Duzib147G0771 Durio zibethinus HOM05D005603 ORTHO05D006944 3.4e-212 741.5 392 89.0
MSTRG.15764 Avicennia marina HOM05D005603 ORTHO05D006944 1.0e-211 740.0 404 85.6
AUR62007651 Chenopodium quinoa HOM05D005603 ORTHO05D006944 2.2e-211 738.8 403 85.9
THA.LOC104819186 Tarenaya hassleriana HOM05D005603 ORTHO05D006944 2.9e-211 738.4 404 86.1
Hund14030 Selenicereus undatus HOM05D005603 ORTHO05D006944 8.5e-211 736.9 403 85.1
TAR376G0194 Trochodendron aralioides HOM05D005603 ORTHO05D006944 8.5e-211 736.9 405 86.7
Ciclev10025760m.g Citrus clementina HOM05D005603 ORTHO05D006944 1.4e-210 736.1 403 85.1
Cc07_g10420 Coffea canephora HOM05D005603 ORTHO05D006944 1.9e-210 735.7 392 88.0
DCAR_021493 Daucus carota HOM05D005603 ORTHO05D006944 2.5e-210 735.3 406 86.2
Lsat_1_v5_gn_3_73720 Lactuca sativa HOM05D005603 ORTHO05D006944 3.2e-210 734.9 397 85.9
Potri.007G015800 Populus trichocarpa HOM05D005603 ORTHO05D006944 7.2e-210 733.8 404 86.4
PSO541G2355 Papaver somniferum HOM05D005603 ORTHO05D006944 1.2e-209 733.0 404 85.4
PSO675G2068 Papaver somniferum HOM05D005603 ORTHO05D006944 1.2e-209 733.0 404 85.4
ATR0620G128 Amborella trichopoda HOM05D005603 ORTHO05D006944 3.6e-209 731.5 405 85.2
PGSC0003DMG400003547 Solanum tuberosum HOM05D005603 ORTHO05D006944 7.9e-209 730.3 390 87.2
CDE05G2538 Ceratophyllum demersum HOM05D005603 ORTHO05D006944 1.0e-208 729.9 404 85.4
Nitab4.5_0000912g0020 Nicotiana tabacum HOM05D005603 ORTHO05D006944 1.8e-208 729.2 411 84.2
Aa31LG4G19220 Aethionema arabicum HOM05D005603 ORTHO05D006944 5.1e-208 727.6 405 84.7
AT3G51130 Arabidopsis thaliana HOM05D005603 ORTHO05D006944 1.5e-207 726.1 405 83.7
CSS0042462 Camellia sinensis var. sinensis HOM05D005603 ORTHO05D006944 1.5e-207 726.1 403 85.6
Peaxi162Scf00083g01233 Petunia axillaris HOM05D005603 ORTHO05D006944 2.6e-207 725.3 397 85.6
Hund16476 Selenicereus undatus HOM05D005603 ORTHO05D006944 3.3e-207 724.9 434 80.4
Carub.0005s1753 Capsella rubella HOM05D005603 ORTHO05D006944 4.4e-207 724.5 405 83.2
EL10As8g23850 Beta vulgaris HOM05D005603 ORTHO05D006944 9.7e-207 723.4 398 84.7
CSS0001882 Camellia sinensis var. sinensis HOM05D005603 ORTHO05D006944 1.7e-206 722.6 403 85.1
SalBow8G5567 Salvia bowleyana HOM05D005603 ORTHO05D006944 2.8e-206 721.8 414 82.4
AL5G31550 Arabidopsis lyrata HOM05D005603 ORTHO05D006944 3.7e-206 721.5 405 83.2
ECA246G4842 Erigeron canadensis HOM05D005603 ORTHO05D006944 3.7e-206 721.5 391 86.4
Oeu035330.1 Olea europaea HOM05D005603 ORTHO05D006944 6.3e-206 720.7 404 83.7
Migut.L00039 Erythranthe guttata HOM05D005603 ORTHO05D006944 1.1e-205 719.9 404 83.9
Thhalv10010418m.g Eutrema salsugineum HOM05D005603 ORTHO05D006944 1.4e-205 719.5 405 83.5
FAN28G0526 Fragaria x ananassa HOM05D005603 ORTHO05D006944 2.0e-204 715.7 405 84.2
Haze_03808 Corylus avellana HOM05D005603 ORTHO05D006944 1.1e-202 709.9 402 84.8
Sed0017160 Sechium edule HOM05D005603 ORTHO05D006944 1.1e-202 709.9 407 83.0
BcaC06g33053 Brassica carinata HOM05D005603 ORTHO05D006944 4.2e-202 708.0 404 82.4
Sp5g11080 Schrenkiella parvula HOM05D005603 ORTHO05D006944 4.2e-202 708.0 405 82.5
CAN.G358.2 Capsicum annuum HOM05D005603 ORTHO05D006944 9.4e-202 706.8 392 84.2
Rhsim08G0035200 Rhododendron simsii HOM05D005603 ORTHO05D006944 2.7e-201 705.3 416 81.0
FAN23G1635 Fragaria x ananassa HOM05D005603 ORTHO05D006944 2.3e-200 702.2 399 83.5
Os06g0714000 Oryza sativa ssp. japonica HOM05D005603 ORTHO05D006944 3.3e-199 698.4 401 82.3
CARHR160730 Cardamine hirsuta HOM05D005603 ORTHO05D006944 1.7e-198 696.0 405 80.5
Cpa.g.sc6.214 Carica papaya HOM05D005603 ORTHO05D006944 2.8e-198 695.3 422 80.8
A03p48150 Brassica napus HOM05D005603 ORTHO05D006944 1.4e-197 693.0 388 82.5
BraA03t13922Z Brassica rapa HOM05D005603 ORTHO05D006944 1.4e-197 693.0 388 82.5
HPP92_025419 Vanilla planifolia HOM05D005603 ORTHO05D006944 5.9e-196 687.6 402 80.8
TWI53G1238 Tripterygium wilfordii HOM05D005603 ORTHO05D006944 1.3e-195 686.4 368 87.5
BolC7t45134H Brassica oleracea HOM05D005603 ORTHO05D006944 2.2e-195 685.6 390 82.1
FAN19G0288 Fragaria x ananassa HOM05D005603 ORTHO05D006944 2.2e-195 685.6 389 83.5
FAN26G2705 Fragaria x ananassa HOM05D005603 ORTHO05D006944 2.6e-191 672.2 382 83.5
MSTRG.3829 Avicennia marina HOM05D005603 ORTHO05D006944 3.3e-191 671.8 404 79.2
Lj4C215G4 Lonicera japonica HOM05D005603 ORTHO05D006944 5.7e-191 671.0 404 79.5
C07p46180 Brassica napus HOM05D005603 ORTHO05D006944 9.7e-191 670.2 411 77.6
BraA09t39879Z Brassica rapa HOM05D005603 ORTHO05D006944 1.8e-189 666.0 389 79.7
A09p44190 Brassica napus HOM05D005603 ORTHO05D006944 4.1e-189 664.8 389 79.4
Duzib264G0505 Durio zibethinus HOM05D005603 ORTHO05D006944 9.1e-189 663.7 405 80.0
BolC8t50258H Brassica oleracea HOM05D005603 ORTHO05D006944 1.2e-188 663.3 389 79.7
unitig_32.g11821 Utricularia gibba HOM05D005603 ORTHO05D006944 5.9e-188 661.0 387 80.4
Sabra05G0096200 Salix brachista HOM05D005603 ORTHO05D006944 8.5e-187 657.1 412 79.6
vmacro22086 Vaccinium macrocarpon HOM05D005603 ORTHO05D006944 1.5e-186 656.4 358 85.2
BcaB01g00547 Brassica carinata HOM05D005603 ORTHO05D006944 1.4e-184 649.8 377 80.4
Zm00001eb227930 Zea mays HOM05D005603 ORTHO05D006944 1.8e-181 639.4 401 76.6
Lalb_Chr16g0377611 Lupinus albus HOM05D005603 ORTHO05D006944 7.0e-181 637.5 325 89.8
Sabra07G0013000 Salix brachista HOM05D005603 ORTHO05D006944 1.6e-180 636.3 404 77.7
vmacro18394 Vaccinium macrocarpon HOM05D005603 ORTHO05D006944 1.5e-178 629.8 361 82.0
C08p26410 Brassica napus HOM05D005603 ORTHO05D006944 6.8e-176 620.9 358 81.0
Pp3c2_6370 Physcomitrium patens HOM05D005603 ORTHO05D006944 4.0e-168 595.1 393 70.5
Ah.02g124640 Amaranthus hybridus HOM05D005603 ORTHO05D006944 1.5e-167 593.2 397 72.5
AagrBONN_evm.TU.Sc2ySwM_228.543 Anthoceros agrestis HOM05D005603 ORTHO05D006944 3.7e-166 588.6 398 70.9
Pp3c10_8990 Physcomitrium patens HOM05D005603 ORTHO05D006944 7.0e-165 584.3 394 69.5
SMO117G0153 Selaginella moellendorffii HOM05D005603 ORTHO05D006944 4.6e-164 581.6 400 68.8
Dinv40059 Davidia involucrata HOM05D005603 ORTHO05D006944 3.1e-160 568.9 306 86.6
Dinv33602 Davidia involucrata HOM05D005603 ORTHO05D006944 1.5e-159 566.6 306 86.3
Actinidia31012 Actinidia chinensis HOM05D005603 ORTHO05D006944 2.5e-154 549.3 307 84.7
SEGI_22640 Sequoiadendron giganteum HOM05D005603 ORTHO05D006944 3.7e-150 535.4 347 74.1
Mapoly0152s0028 Marchantia polymorpha HOM05D005603 ORTHO05D006944 1.9e-146 523.1 400 63.5
Mapoly0094s0075 Marchantia polymorpha HOM05D005603 ORTHO05D006944 6.8e-144 514.6 393 62.8
Lalb_Chr09g0321921 Lupinus albus HOM05D005603 ORTHO05D006944 2.9e-134 482.6 242 95.0
Solyc02g075630.3 Solanum lycopersicum HOM05D005603 ORTHO05D006944 2.8e-105 386.3 209 87.1
SMO037G0002 Selaginella moellendorffii HOM05D005603 ORTHO05D006944 3.7e-105 386.0 266 67.7
Atru.chr3.766 Acer truncatum HOM05D005603 ORTHO05D006944 4.2e-93 345.9 195 83.6
Actinidia26078 Actinidia chinensis HOM05D005603 ORTHO05D006944 2.8e-89 333.2 217 76.5
Migut.H02480 Erythranthe guttata HOM05D005603 ORTHO05D006944 8.5e-86 321.6 373 50.9
Nn015s41468 Nelumbo nucifera HOM05D005603 ORTHO05D006944 2.1e-84 317.0 171 84.2
Lalb_Chr09g0321931 Lupinus albus HOM05D005603 ORTHO05D006944 3.6e-84 316.2 161 88.8
PRCOL_00000516 Prasinoderma coloniale HOM05D005603 ORTHO05D006944 4.7e-76 289.3 435 40.0
CBR_g36682 Chara braunii HOM05D005603 ORTHO05D000002 8.0e-76 288.5 224 60.7
Nn015s41469 Nelumbo nucifera HOM05D005603 ORTHO05D006944 3.2e-69 266.5 146 82.9
BcaC06g33054 Brassica carinata HOM05D005603 ORTHO05D006944 2.3e-59 233.8 146 76.7
CBR_g36680 Chara braunii HOM05D005603 ORTHO05D006944 2.0e-58 230.7 175 62.3
Atru.chr2.40 Acer truncatum HOM05D005603 ORTHO05D006944 1.5e-45 188.0 190 53.7
Actinidia31013 Actinidia chinensis HOM05D005603 ORTHO05D006944 1.4e-32 144.8 72 91.7
RcHm_v2.0_Chr7g0231521 Rosa chinensis HOM05D005603 ORTHO05D006944 3.0e-22 110.5 203 39.9
Cfa027245 Carpinus fangiana HOM05D005603 ORTHO05D006944 3.0e-14 84.0 274 27.0
COL.COLO4_32114 Corchorus olitorius HOM05D000931 ORTHO05D002226 9.3e-08 62.4 51 58.8


User provided reference genes

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