Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G071150 Glycine max HOM05D002962 ORTHO05D003280 2.2e-91 339.0 171 100.0
Glyma.01G172000 Glycine max HOM05D002962 ORTHO05D003280 5.8e-68 261.2 158 88.0
VMungo1215G0433 Vigna mungo HOM05D002962 ORTHO05D003280 1.6e-46 189.9 168 63.7
Ca_24872_v3 Cicer arietinum L. HOM05D002962 ORTHO05D003280 6.2e-46 188.0 157 66.2
arahy.Tifrunner.gnm1.ann1.6ZAY02 Arachis hypogaea HOM05D002962 ORTHO05D003280 2.6e-44 182.6 159 64.8
arahy.Tifrunner.gnm1.ann1.IG7GIS Arachis hypogaea HOM05D002962 ORTHO05D003280 4.4e-44 181.8 159 64.2
Medtr5g020870 Medicago truncatula HOM05D002962 ORTHO05D003280 1.3e-43 180.3 161 62.7
VMungo1396G0001 Vigna mungo HOM05D002962 ORTHO05D003280 3.2e-42 175.6 168 60.1
Lalb_Chr05g0212661 Lupinus albus HOM05D002962 ORTHO05D003280 6.0e-41 171.4 168 61.3
Lj2g0023270 Lotus japonicus HOM05D002962 ORTHO05D003280 3.0e-40 169.1 156 64.1
Lalb_Chr09g0333421 Lupinus albus HOM05D002962 ORTHO05D003280 1.5e-39 166.8 147 66.0
Lj4g0019305 Lotus japonicus HOM05D002962 ORTHO05D003280 3.3e-39 165.6 165 59.4
TPR.G2377 Trifolium pratense HOM05D002962 ORTHO05D003280 2.1e-38 162.9 154 60.4
Ca_22294_v3 Cicer arietinum L. HOM05D002962 ORTHO05D003280 6.2e-38 161.4 158 57.6
Ca_22324_v3 Cicer arietinum L. HOM05D002962 ORTHO05D003280 6.2e-38 161.4 158 57.6
Glyma.02G054800 Glycine max HOM05D004449 ORTHO05D005473 1.1e-37 160.6 150 64.0
Medtr8g077135 Medicago truncatula HOM05D002962 ORTHO05D003280 6.9e-37 157.9 167 55.1
Psat4g094840 Pisum sativum HOM05D002962 ORTHO05D003280 9.9e-36 154.1 165 55.8
VMungo0251G3100 Vigna mungo HOM05D002962 ORTHO05D003280 9.9e-36 154.1 162 56.2
Lalb_Chr09g0322191 Lupinus albus HOM05D002962 ORTHO05D003280 2.9e-35 152.5 162 56.2
Phvul.003G255500 Phaseolus vulgaris HOM05D002962 ORTHO05D003280 3.8e-35 152.1 161 57.1
Psat2g157840 Pisum sativum HOM05D002962 ORTHO05D003280 1.9e-34 149.8 154 58.4
Glyma.16G135000 Glycine max HOM05D002962 ORTHO05D003280 3.6e-30 135.6 156 55.1
COL.COLO4_22042 Corchorus olitorius HOM05D002962 ORTHO05D003280 1.1e-29 134.0 155 52.9
TWI09G0980 Tripterygium wilfordii HOM05D002962 ORTHO05D003280 9.0e-29 131.0 164 47.0
Eucgr.I02415 Eucalyptus grandis HOM05D002962 ORTHO05D003280 2.6e-28 129.4 182 45.1
TWI73G0991 Tripterygium wilfordii HOM05D002962 ORTHO05D003280 2.6e-28 129.4 170 47.1
CiPaw.02G020000 Carya illinoinensis HOM05D002962 ORTHO05D003280 3.8e-27 125.6 153 49.7
arahy.Tifrunner.gnm1.ann1.NSD9NK Arachis hypogaea HOM05D000001 ORTHO05D000003 1.4e-26 123.6 146 53.4
Duzib264G0441 Durio zibethinus HOM05D002962 ORTHO05D003280 1.9e-26 123.2 154 50.6
Gohir.A12G063600 Gossypium hirsutum HOM05D002962 ORTHO05D003280 7.1e-26 121.3 161 49.7
Gohir.D12G063400 Gossypium hirsutum HOM05D002962 ORTHO05D003280 1.2e-25 120.6 161 49.7
Gorai.008G066700 Gossypium raimondii HOM05D002962 ORTHO05D003280 1.2e-25 120.6 161 49.7
GSVIVG01018925001 Vitis vinifera HOM05D002962 ORTHO05D003280 2.1e-25 119.8 163 48.5
Cpa.g.sc36.5 Carica papaya HOM05D002962 ORTHO05D003280 2.7e-25 119.4 177 44.1
Prupe.7G157800 Prunus persica HOM05D002962 ORTHO05D003280 4.6e-25 118.6 165 46.7
Haze_15064 Corylus avellana HOM05D002962 ORTHO05D003280 6.0e-25 118.2 150 47.3
Gohir.A02G167000 Gossypium hirsutum HOM05D002962 ORTHO05D003280 7.9e-25 117.9 158 49.4
Gohir.D03G013000 Gossypium hirsutum HOM05D002962 ORTHO05D003280 7.9e-25 117.9 157 47.8
PGR102G1557 Punica granatum HOM05D002962 ORTHO05D003280 7.9e-25 117.9 166 47.0
Thecc.01G031700 Theobroma cacao HOM05D002962 ORTHO05D003280 7.9e-25 117.9 158 48.7
ClCG01G019720 Citrullus lanatus HOM05D002962 ORTHO05D003280 1.0e-24 117.5 152 48.7
Gorai.003G013300 Gossypium raimondii HOM05D002962 ORTHO05D003280 1.3e-24 117.1 157 47.8
Manes.02G096200 Manihot esculenta HOM05D002962 ORTHO05D003280 1.8e-24 116.7 113 57.5
Cfa004337 Carpinus fangiana HOM05D002962 ORTHO05D003280 2.3e-24 116.3 150 46.0
Duzib187G1402 Durio zibethinus HOM05D002962 ORTHO05D003280 2.3e-24 116.3 158 46.2
QL06p047095 Quercus lobata HOM05D002962 ORTHO05D003280 2.3e-24 116.3 150 48.7
Duzib147G1401 Durio zibethinus HOM05D002962 ORTHO05D003280 3.0e-24 115.9 158 46.8
MELO3C007841.2 Cucumis melo HOM05D002962 ORTHO05D003280 5.1e-24 115.2 136 50.7
RcHm_v2.0_Chr2g0100981 Rosa chinensis HOM05D002962 ORTHO05D003280 6.7e-24 114.8 105 60.0
CsaV3_6G046440 Cucumis sativus L. HOM05D002962 ORTHO05D003280 1.5e-23 113.6 136 50.0
Cpa.g.sc6.150 Carica papaya HOM05D002962 ORTHO05D003280 1.9e-23 113.2 149 49.0
CiPaw.01G044300 Carya illinoinensis HOM05D002962 ORTHO05D003280 4.3e-23 112.1 150 46.0
Manes.01G137800 Manihot esculenta HOM05D002962 ORTHO05D003280 4.3e-23 112.1 199 41.2
Sed0024753 Sechium edule HOM05D002962 ORTHO05D003280 5.6e-23 111.7 102 59.8
Atru.chr3.625 Acer truncatum HOM05D002962 ORTHO05D003280 7.4e-23 111.3 160 47.5
Hma1.2p1_0224F.1_g094470 Hydrangea macrophylla HOM05D002962 ORTHO05D003280 9.6e-23 110.9 161 44.1
Eucgr.H03321 Eucalyptus grandis HOM05D002962 ORTHO05D003280 2.8e-22 109.4 163 45.4
Sabra05G0099400 Salix brachista HOM05D002962 ORTHO05D003280 4.8e-22 108.6 172 46.5
CANSAT01G3016 Cannabis sativa HOM05D002962 ORTHO05D003280 6.2e-22 108.2 140 50.0
C07p46030 Brassica napus HOM05D002962 ORTHO05D003280 1.4e-21 107.1 178 43.3
Ciclev10025466m.g Citrus clementina HOM05D002962 ORTHO05D003280 1.4e-21 107.1 147 50.3
BolC7t45121H Brassica oleracea HOM05D002962 ORTHO05D003280 1.8e-21 106.7 180 42.8
Thhalv10010373m.g Eutrema salsugineum HOM05D002962 ORTHO05D003280 3.1e-21 105.9 170 43.5
Phvul.002G033400 Phaseolus vulgaris HOM05D002962 ORTHO05D003280 5.3e-21 105.1 159 43.4
Sed0002223 Sechium edule HOM05D002962 ORTHO05D003280 1.2e-20 104.0 102 56.9
CARHR160480 Cardamine hirsuta HOM05D002962 ORTHO05D003280 2.6e-20 102.8 156 42.9
BcaC07g39559 Brassica carinata HOM05D002962 ORTHO05D003280 3.4e-20 102.4 180 41.1
CSS0034307 Camellia sinensis var. sinensis HOM05D002962 ORTHO05D003280 3.4e-20 102.4 181 40.9
Lj9C586T8 Lonicera japonica HOM05D002962 ORTHO05D003280 4.5e-20 102.1 165 44.2
BolC8t50230H Brassica oleracea HOM05D002962 ORTHO05D003280 1.0e-19 100.9 180 41.1
A03p48020 Brassica napus HOM05D002962 ORTHO05D003280 1.7e-19 100.1 165 41.8
Potri.005G120600 Populus trichocarpa HOM05D002962 ORTHO05D003280 1.7e-19 100.1 170 45.3
THA.LOC104819203 Tarenaya hassleriana HOM05D002962 ORTHO05D003280 1.7e-19 100.1 149 41.6
BraA03t13910Z Brassica rapa HOM05D002962 ORTHO05D003280 2.2e-19 99.8 166 42.2
Dinv40009 Davidia involucrata HOM05D002962 ORTHO05D004300 2.2e-19 99.8 174 43.1
Actinidia19196 Actinidia chinensis HOM05D002962 ORTHO05D003280 2.9e-19 99.4 173 42.2
PGR119G1115 Punica granatum HOM05D002962 ORTHO05D003280 3.8e-19 99.0 171 42.7
TPR.G24105 Trifolium pratense HOM05D002962 ORTHO05D003280 3.8e-19 99.0 155 47.1
AL5G31270 Arabidopsis lyrata HOM05D002962 ORTHO05D003280 4.9e-19 98.6 176 42.0
FAN23G2353 Fragaria x ananassa HOM05D002962 ORTHO05D003280 6.5e-19 98.2 115 54.8
BcaC06g33069 Brassica carinata HOM05D002962 ORTHO05D003280 8.4e-19 97.8 179 39.7
BcaC06g33332 Brassica carinata HOM05D002962 ORTHO05D003280 8.4e-19 97.8 179 39.7
Carub.0005s1730 Capsella rubella HOM05D002962 ORTHO05D003280 8.4e-19 97.8 167 40.7
Potri.007G022100 Populus trichocarpa HOM05D002962 ORTHO05D003280 8.4e-19 97.8 169 42.6
AT3G50910 Arabidopsis thaliana HOM05D002962 ORTHO05D003280 1.1e-18 97.4 174 38.5
BcaC09g50053 Brassica carinata HOM05D002962 ORTHO05D003280 1.1e-18 97.4 102 50.0
Sp5g11320 Schrenkiella parvula HOM05D002962 ORTHO05D003280 1.1e-18 97.4 171 39.8
Aa31LG4G19010 Aethionema arabicum HOM05D002962 ORTHO05D003280 1.4e-18 97.1 179 35.2
C08p26120 Brassica napus HOM05D002962 ORTHO05D003280 1.4e-18 97.1 101 55.4
FAN26G1847 Fragaria x ananassa HOM05D002962 ORTHO05D003280 1.9e-18 96.7 218 37.6
A09p44020 Brassica napus HOM05D002962 ORTHO05D003280 3.2e-18 95.9 162 43.8
BraA09t39860Z Brassica rapa HOM05D002962 ORTHO05D003280 3.2e-18 95.9 162 43.8
TAR376G0270 Trochodendron aralioides HOM05D002962 ORTHO05D003280 4.2e-18 95.5 155 38.1
vmacro17814 Vaccinium macrocarpon HOM05D002962 ORTHO05D003280 4.2e-18 95.5 174 40.2
FAN28G2586 Fragaria x ananassa HOM05D002962 ORTHO05D003280 1.2e-17 94.0 218 38.1
C01p29540 Brassica napus HOM05D002962 ORTHO05D003280 1.6e-17 93.6 102 49.0
BolC1t02897H Brassica oleracea HOM05D002962 ORTHO05D003280 1.6e-17 93.6 102 49.0
Gorai.011G101100 Gossypium raimondii HOM05D002962 ORTHO05D003280 1.6e-17 93.6 159 39.6
Gohir.D10G092100 Gossypium hirsutum HOM05D002962 ORTHO05D003280 2.1e-17 93.2 159 39.6
Sabra07G0019200 Salix brachista HOM05D002962 ORTHO05D003280 2.7e-17 92.8 167 41.3
BcaC06g33066 Brassica carinata HOM05D002962 ORTHO05D003280 6.0e-17 91.7 172 37.8
Gohir.A10G096000 Gossypium hirsutum HOM05D002962 ORTHO05D003280 6.0e-17 91.7 159 39.0
THA.LOC104826683 Tarenaya hassleriana HOM05D002962 ORTHO05D003280 7.9e-17 91.3 103 51.5
FvH4_1g12900 Fragaria vesca HOM05D002962 ORTHO05D003280 1.8e-16 90.1 220 35.9
MBI12_g33189_MAGBIO Magnolia biondii HOM05D002962 ORTHO05D003280 2.3e-16 89.7 152 39.5
FAN19G1181 Fragaria x ananassa HOM05D002962 ORTHO05D003280 3.9e-16 89.0 220 35.9
THA.LOC104821299 Tarenaya hassleriana HOM05D002962 ORTHO05D003280 6.7e-16 88.2 155 40.0
MD15G1257200 Malus domestica HOM05D002962 ORTHO05D003280 3.3e-15 85.9 83 57.8
BcaB01g00566 Brassica carinata HOM05D002962 ORTHO05D003280 4.3e-15 85.5 179 37.4
Cc07_g09830 Coffea canephora HOM05D002962 ORTHO05D003280 4.3e-15 85.5 197 37.6
Oeu027437.1 Olea europaea HOM05D002962 ORTHO05D003280 4.3e-15 85.5 199 37.7
Nn5g29667 Nelumbo nucifera HOM05D002962 ORTHO05D003280 9.6e-15 84.3 155 38.7
SGA_v2.0_scaffold521G52698 Striga asiatica HOM05D002962 ORTHO05D003280 1.3e-14 84.0 132 39.4
Nn1g04926 Nelumbo nucifera HOM05D002962 ORTHO05D003280 2.1e-14 83.2 174 35.1
MD02G1143900 Malus domestica HOM05D002962 ORTHO05D003280 2.8e-14 82.8 83 56.6
Hund16634 Selenicereus undatus HOM05D002962 ORTHO05D003280 3.7e-14 82.4 126 46.8
HPP92_019941 Vanilla planifolia HOM05D002962 ORTHO05D003280 3.7e-14 82.4 152 39.5
MSTRG.2480 Avicennia marina HOM05D002962 ORTHO05D003280 1.1e-13 80.9 197 37.1
DCAR_017305 Daucus carota HOM05D002962 ORTHO05D003280 1.4e-13 80.5 166 41.0
Sc16g0002600 Simmondsia chinensis HOM05D002962 ORTHO05D003280 1.4e-13 80.5 117 45.3
Oeu012899.1 Olea europaea HOM05D002962 ORTHO05D003280 2.4e-13 79.7 191 36.1
ATR0568G222 Amborella trichopoda HOM05D002962 ORTHO05D003280 5.3e-13 78.6 104 47.1
HanXRQChr09g0261381 Helianthus annuus HOM05D002962 ORTHO05D003280 5.3e-13 78.6 101 45.5
Nitab4.5_0000178g0300 Nicotiana tabacum HOM05D002962 ORTHO05D003280 5.3e-13 78.6 178 36.0
Lsat_1_v5_gn_2_77380 Lactuca sativa HOM05D002962 ORTHO05D003280 6.9e-13 78.2 109 45.9
ECA232G3627 Erigeron canadensis HOM05D002962 ORTHO05D003003 9.0e-13 77.8 138 42.0
Peaxi162Scf00366g00712 Petunia axillaris HOM05D002962 ORTHO05D003280 9.0e-13 77.8 180 37.8
SGA_v2.0_scaffold12G06303 Striga asiatica HOM05D002962 ORTHO05D003280 1.5e-12 77.0 159 40.3
Migut.H02529 Erythranthe guttata HOM05D002962 ORTHO05D003280 2.0e-12 76.6 226 31.9
Nitab4.5_0001617g0050 Nicotiana tabacum HOM05D002962 ORTHO05D003280 3.4e-12 75.9 178 36.0
Solyc02g085000.3 Solanum lycopersicum HOM05D002962 ORTHO05D003280 3.4e-12 75.9 173 36.4
EL10As8g23915 Beta vulgaris HOM05D006011 ORTHO05D007421 1.0e-11 74.3 172 35.5
AUR62004084 Chenopodium quinoa HOM05D002962 ORTHO05D003280 1.7e-11 73.6 133 39.1
HanXRQChr14g0440561 Helianthus annuus HOM05D002962 ORTHO05D003280 3.8e-11 72.4 155 38.7
Lsat_1_v5_gn_4_152501 Lactuca sativa HOM05D002962 ORTHO05D003280 1.9e-10 70.1 154 38.3
AL8G45050 Arabidopsis lyrata HOM05D002962 ORTHO05D003280 2.5e-10 69.7 102 42.2
Ah.03g141110 Amaranthus hybridus HOM05D002962 ORTHO05D003280 5.5e-10 68.6 142 37.3
SalBow8G0268 Salvia bowleyana HOM05D002962 ORTHO05D003280 5.5e-10 68.6 128 39.1
Sopen02g029680 Solanum pennellii HOM05D002962 ORTHO05D003280 9.3e-10 67.8 192 34.4
PSO541G2482 Papaver somniferum HOM05D002962 ORTHO05D003280 1.2e-09 67.4 155 31.0
Rhsim08G0119500 Rhododendron simsii HOM05D002962 ORTHO05D003280 6.1e-09 65.1 110 39.1
Zm00001eb252010 Zea mays HOM05D002962 ORTHO05D003280 6.1e-09 65.1 105 41.9
Ah.02g125020 Amaranthus hybridus HOM05D002962 ORTHO05D003280 7.9e-09 64.7 146 38.4
PGSC0003DMG400003520 Solanum tuberosum HOM05D002962 ORTHO05D003280 1.0e-08 64.3 180 32.2
unitig_736.g22639 Utricularia gibba HOM05D002962 ORTHO05D003280 3.0e-08 62.8 143 33.6
Os02g0704600 Oryza sativa ssp. japonica HOM05D002962 ORTHO05D003280 6.7e-08 61.6 166 32.5
Thhalv10004394m.g Eutrema salsugineum HOM05D002962 ORTHO05D003280 8.7e-08 61.2 171 31.6
SEGI_32683 Sequoiadendron giganteum HOM05D002962 ORTHO05D003280 8.7e-08 61.2 141 31.2
CARHR281270 Cardamine hirsuta HOM05D002962 ORTHO05D003280 1.9e-07 60.1 90 40.0
AT5G66480 Arabidopsis thaliana HOM05D002962 ORTHO05D003280 2.5e-07 59.7 151 31.1
Carub.0008s2804 Capsella rubella HOM05D002962 ORTHO05D003280 5.7e-07 58.5 125 31.2
CDE02G1522 Ceratophyllum demersum HOM05D002962 ORTHO05D003280 1.3e-06 57.4 158 30.4
Nn3g18448 Nelumbo nucifera HOM05D002962 ORTHO05D003280 1.3e-06 57.4 58 51.7
ECA238G1910 Erigeron canadensis HOM05D002962 ORTHO05D003280 1.6e-06 57.0 61 54.1
Zm00001eb295390 Zea mays HOM05D002962 ORTHO05D003280 2.8e-06 56.2 153 32.7
Nitab4.5_0004090g0080 Nicotiana tabacum HOM05D002962 ORTHO05D003280 6.3e-06 55.1 89 39.3
MBI18_g28939_MAGBIO Magnolia biondii HOM05D002962 ORTHO05D003280 8.2e-06 54.7 87 39.1


User provided reference genes

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