Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G067600 Glycine max HOM05D003234 ORTHO05D003635 8.0e-49 196.8 103 100.0
Glyma.01G175400 Glycine max HOM05D003234 ORTHO05D003635 5.4e-45 184.1 103 94.2
Phvul.002G029601 Phaseolus vulgaris HOM05D003234 ORTHO05D003635 2.0e-39 165.6 103 83.5
Lalb_Chr09g0322471 Lupinus albus HOM05D003234 ORTHO05D003635 3.4e-31 138.3 103 72.8
Lj4g0023984 Lotus japonicus HOM05D003234 ORTHO05D003635 1.2e-28 129.8 103 68.9
Psat4g092120 Pisum sativum HOM05D003234 ORTHO05D003635 1.6e-28 129.4 103 70.9
arahy.Tifrunner.gnm1.ann1.F5AS58 Arachis hypogaea HOM05D003234 ORTHO05D003635 5.1e-27 124.4 103 70.9
arahy.Tifrunner.gnm1.ann1.WI3JHU Arachis hypogaea HOM05D003234 ORTHO05D003635 5.1e-27 124.4 103 70.9
TPR.G34985 Trifolium pratense HOM05D003234 ORTHO05D003635 1.9e-26 122.5 103 66.0
Manes.01G134700 Manihot esculenta HOM05D003234 ORTHO05D003635 9.5e-26 120.2 105 65.7
Cc07_g09430 Coffea canephora HOM05D003234 ORTHO05D003635 2.4e-24 115.5 103 63.1
Hma1.2p1_0717F.1_g208130 Hydrangea macrophylla HOM05D003234 ORTHO05D003635 2.4e-24 115.5 102 60.8
CSS0031108 Camellia sinensis var. sinensis HOM05D003234 ORTHO05D003635 1.5e-23 112.8 102 59.8
Actinidia12120 Actinidia chinensis HOM05D003234 ORTHO05D003635 2.0e-23 112.5 105 61.0
Gorai.011G102100 Gossypium raimondii HOM05D003234 ORTHO05D003635 3.4e-23 111.7 105 59.0
Lsat_1_v5_gn_3_77600 Lactuca sativa HOM05D003234 ORTHO05D003635 4.4e-23 111.3 104 58.7
unitig_21.g20955 Utricularia gibba HOM05D003234 ORTHO05D003635 4.4e-23 111.3 104 58.7
Gohir.D10G092900 Gossypium hirsutum HOM05D003234 ORTHO05D003635 7.6e-23 110.5 105 59.0
MSTRG.23532 Avicennia marina HOM05D003234 ORTHO05D003635 2.2e-22 109.0 105 56.2
HanXRQChr15g0482261 Helianthus annuus HOM05D003234 ORTHO05D003635 2.9e-22 108.6 105 60.0
Ciclev10026821m.g Citrus clementina HOM05D003234 ORTHO05D003635 3.8e-22 108.2 105 61.0
CiPaw.02G016600 Carya illinoinensis HOM05D003234 ORTHO05D003635 4.9e-22 107.8 105 61.9
Thecc.01G037000 Theobroma cacao HOM05D003234 ORTHO05D003635 4.9e-22 107.8 105 58.1
Migut.H00998 Erythranthe guttata HOM05D003234 ORTHO05D003635 6.4e-22 107.5 105 56.2
Actinidia36555 Actinidia chinensis HOM05D003234 ORTHO05D003635 1.1e-21 106.7 105 59.0
GSVIVG01018978001 Vitis vinifera HOM05D003234 ORTHO05D003635 3.2e-21 105.1 105 59.0
CAN.G358.101 Capsicum annuum HOM05D003234 ORTHO05D003635 1.6e-20 102.8 103 54.4
Gohir.A10G095000 Gossypium hirsutum HOM05D003234 ORTHO05D003635 1.6e-20 102.8 105 55.2
ECA246G3301 Erigeron canadensis HOM05D003234 ORTHO05D003635 2.7e-20 102.1 106 58.5
CANSAT01G1184 Cannabis sativa HOM05D003234 ORTHO05D003635 6.6e-19 97.4 106 56.6
Gohir.D12G065100 Gossypium hirsutum HOM05D003234 ORTHO05D003635 6.6e-19 97.4 105 54.3
Gorai.008G068300 Gossypium raimondii HOM05D003234 ORTHO05D003635 6.6e-19 97.4 105 54.3
Sopen02g030060 Solanum pennellii HOM05D003234 ORTHO05D003635 1.1e-18 96.7 103 55.3
SGA_v2.0_scaffold276G46636 Striga asiatica HOM05D003234 ORTHO05D003635 1.1e-18 96.7 124 49.2
Nn1g05018 Nelumbo nucifera HOM05D003234 ORTHO05D003635 5.6e-18 94.4 107 56.1
Aqoxy5G01648 Aquilegia oxysepala HOM05D003234 ORTHO05D003635 2.8e-17 92.0 102 50.0
Atru.chr3.563 Acer truncatum HOM05D003234 ORTHO05D003635 8.1e-17 90.5 105 53.3
Dinv39975 Davidia involucrata HOM05D003234 ORTHO05D003635 8.1e-17 90.5 102 55.9
ATR0733G120 Amborella trichopoda HOM05D003234 ORTHO05D003635 4.4e-15 84.7 106 51.9
Eucgr.I02454 Eucalyptus grandis HOM05D003234 ORTHO05D003635 9.9e-15 83.6 103 49.5
Zm00001eb009770 Zea mays HOM05D003234 ORTHO05D003635 1.3e-14 83.2 107 50.5
Migut.L00515 Erythranthe guttata HOM05D003234 ORTHO05D003635 2.1e-12 75.9 105 44.8
SEGI_11040 Sequoiadendron giganteum HOM05D003234 ORTHO05D003635 3.5e-12 75.1 106 47.2
Aqoxy6G01093 Aquilegia oxysepala HOM05D003234 ORTHO05D003635 6.0e-12 74.3 107 50.5
Os03g0669600 Oryza sativa ssp. japonica HOM05D003234 ORTHO05D003635 1.7e-11 72.8 108 50.0
Gohir.A12G065000 Gossypium hirsutum HOM05D003234 ORTHO05D003635 2.5e-10 68.9 105 42.9
CDE04G0975 Ceratophyllum demersum HOM05D003234 ORTHO05D003635 2.8e-09 65.5 64 54.7
Dinv26826 Davidia involucrata HOM05D003234 ORTHO05D003635 6.2e-09 64.3 53 67.9
Peaxi162Scf00515g00521 Petunia axillaris HOM05D003234 ORTHO05D003635 6.2e-09 64.3 68 54.4
SGA_v2.0_scaffold275G46578 Striga asiatica HOM05D003234 ORTHO05D003635 2.4e-08 62.4 107 41.1
MSTRG.25294 Avicennia marina HOM05D003234 ORTHO05D003635 3.1e-08 62.0 107 39.3
ClCG00G002880 Citrullus lanatus HOM05D003234 ORTHO05D003635 3.1e-08 62.0 106 38.7
ClCG08G009600 Citrullus lanatus HOM05D003234 ORTHO05D003635 5.3e-08 61.2 107 38.3
MELO3C026549.2 Cucumis melo HOM05D003234 ORTHO05D003635 6.9e-08 60.8 107 38.3
CsaV3_6G031700 Cucumis sativus L. HOM05D003234 ORTHO05D003635 6.9e-08 60.8 107 38.3
MSTRG.1123 Avicennia marina HOM05D003234 ORTHO05D003635 9.0e-08 60.5 107 38.3
Actinidia15481 Actinidia chinensis HOM05D003234 ORTHO05D003635 1.2e-07 60.1 106 37.7
Duzib116G0672 Durio zibethinus HOM05D003234 ORTHO05D003635 1.2e-07 60.1 107 38.3
Phvul.009G021200 Phaseolus vulgaris HOM05D003234 ORTHO05D003635 1.2e-07 60.1 108 38.9
CDE02G2075 Ceratophyllum demersum HOM05D003234 ORTHO05D003635 1.5e-07 59.7 106 39.6
Nitab4.5_0000588g0270 Nicotiana tabacum HOM05D003234 ORTHO05D003635 1.5e-07 59.7 107 39.3
Duzib093G1967 Durio zibethinus HOM05D003234 ORTHO05D003635 2.0e-07 59.3 107 37.4
Hma1.2p1_1260F.1_g271060 Hydrangea macrophylla HOM05D003234 ORTHO05D003635 2.0e-07 59.3 106 36.8
Cpa.g.sc26.223 Carica papaya HOM05D003234 ORTHO05D003635 2.6e-07 58.9 107 38.3
CDE02G3043 Ceratophyllum demersum HOM05D003234 ORTHO05D003635 2.6e-07 58.9 53 56.6
Gohir.A05G180900 Gossypium hirsutum HOM05D003234 ORTHO05D003635 2.6e-07 58.9 107 37.4
Gohir.D05G183900 Gossypium hirsutum HOM05D003234 ORTHO05D003635 2.6e-07 58.9 107 37.4
Gorai.009G189400 Gossypium raimondii HOM05D003234 ORTHO05D003635 2.6e-07 58.9 107 37.4
Peaxi162Scf00400g00314 Petunia axillaris HOM05D003234 ORTHO05D003635 2.6e-07 58.9 109 37.6
Sed0012631 Sechium edule HOM05D003234 ORTHO05D003635 2.6e-07 58.9 107 37.4
Hund05127 Selenicereus undatus HOM05D003234 ORTHO05D003635 2.6e-07 58.9 106 34.9
PGSC0003DMG400029411 Solanum tuberosum HOM05D003234 ORTHO05D003635 2.6e-07 58.9 107 37.4
Eucgr.F03542 Eucalyptus grandis HOM05D003234 ORTHO05D003635 4.5e-07 58.2 107 39.3
Glyma.06G019600 Glycine max HOM05D003234 ORTHO05D003635 4.5e-07 58.2 108 39.8
Potri.005G248300 Populus trichocarpa HOM05D003234 ORTHO05D003635 4.5e-07 58.2 107 37.4
Thecc.08G055600 Theobroma cacao HOM05D003234 ORTHO05D003635 4.5e-07 58.2 107 37.4
Actinidia37965 Actinidia chinensis HOM05D003234 ORTHO05D003635 5.8e-07 57.8 107 36.4
MSTRG.22360 Avicennia marina HOM05D003234 ORTHO05D003635 5.8e-07 57.8 107 37.4
EL10Ac1g02011 Beta vulgaris HOM05D003234 ORTHO05D003635 5.8e-07 57.8 106 34.9
CANSAT25G0014 Cannabis sativa HOM05D003234 ORTHO05D003635 5.8e-07 57.8 107 36.4
Dinv31919 Davidia involucrata HOM05D003234 ORTHO05D003635 5.8e-07 57.8 107 37.4
Nitab4.5_0007869g0020 Nicotiana tabacum HOM05D003234 ORTHO05D003635 5.8e-07 57.8 107 36.4
Sed0016414 Sechium edule HOM05D003234 ORTHO05D003635 5.8e-07 57.8 107 36.4
Solyc12g094510.2 Solanum lycopersicum HOM05D003234 ORTHO05D003635 5.8e-07 57.8 107 36.4
Sopen12g031400 Solanum pennellii HOM05D003234 ORTHO05D003635 5.8e-07 57.8 107 36.4
TPR.G38123 Trifolium pratense HOM05D003234 ORTHO05D003635 5.8e-07 57.8 108 38.9
TWI12G0861 Tripterygium wilfordii HOM05D003234 ORTHO05D003635 5.8e-07 57.8 107 36.4
FAN15G0717 Fragaria x ananassa HOM05D003234 ORTHO05D003635 7.6e-07 57.4 107 37.4
FAN20G3055 Fragaria x ananassa HOM05D003234 ORTHO05D003635 7.6e-07 57.4 107 37.4
Nitab4.5_0000699g0170 Nicotiana tabacum HOM05D003234 ORTHO05D003635 7.6e-07 57.4 107 36.4
RcHm_v2.0_Chr6g0304061 Rosa chinensis HOM05D003234 ORTHO05D003635 7.6e-07 57.4 107 37.4
SGA_v2.0_scaffold19G08601 Striga asiatica HOM05D003234 ORTHO05D003635 7.6e-07 57.4 107 38.3
Migut.C00924 Erythranthe guttata HOM05D003234 ORTHO05D003635 9.9e-07 57.0 107 38.3
Glyma.04G019300 Glycine max HOM05D003234 ORTHO05D003635 9.9e-07 57.0 108 38.9
MD15G1003700 Malus domestica HOM05D003234 ORTHO05D003635 9.9e-07 57.0 108 38.0
THA.LOC104809745 Tarenaya hassleriana HOM05D003234 ORTHO05D003635 9.9e-07 57.0 107 37.4
unitig_21.g20148 Utricularia gibba HOM05D003234 ORTHO05D003635 9.9e-07 57.0 107 38.3
VMungo1309G2978 Vigna mungo HOM05D003234 ORTHO05D003635 9.9e-07 57.0 108 38.9
arahy.Tifrunner.gnm1.ann1.G2HAI2 Arachis hypogaea HOM05D003234 ORTHO05D003635 1.3e-06 56.6 108 36.1
CAN.G208.7 Capsicum annuum HOM05D003234 ORTHO05D003635 1.3e-06 56.6 107 35.5
Medtr3g115080 Medicago truncatula HOM05D003234 ORTHO05D003635 1.3e-06 56.6 109 36.7
Prupe.1G356200 Prunus persica HOM05D003234 ORTHO05D003635 1.3e-06 56.6 107 37.4
arahy.Tifrunner.gnm1.ann1.VFC9DI Arachis hypogaea HOM05D003234 ORTHO05D003635 1.7e-06 56.2 107 35.5
Gohir.A02G083600 Gossypium hirsutum HOM05D003234 ORTHO05D003635 1.7e-06 56.2 107 36.4
Lalb_Chr01g0008381 Lupinus albus HOM05D003234 ORTHO05D003635 1.7e-06 56.2 107 38.3
Lalb_Chr19g0131711 Lupinus albus HOM05D003234 ORTHO05D003635 1.7e-06 56.2 107 39.3
CiPaw.07G140700 Carya illinoinensis HOM05D003234 ORTHO05D003635 2.2e-06 55.8 107 34.6
FvH4_2g37670 Fragaria vesca HOM05D003234 ORTHO05D003635 2.2e-06 55.8 107 37.4
Gohir.D02G099100 Gossypium hirsutum HOM05D003234 ORTHO05D003635 2.2e-06 55.8 107 36.4
Gorai.009G267900 Gossypium raimondii HOM05D003234 ORTHO05D003635 2.2e-06 55.8 107 34.6
MD08G1004300 Malus domestica HOM05D003234 ORTHO05D003635 2.2e-06 55.8 108 38.0
Manes.05G140300 Manihot esculenta HOM05D003234 ORTHO05D003635 2.2e-06 55.8 107 37.4
Psat0s3811g0040 Pisum sativum HOM05D003234 ORTHO05D003635 2.2e-06 55.8 108 38.0
Potri.002G013000 Populus trichocarpa HOM05D003234 ORTHO05D003635 2.2e-06 55.8 107 36.4
SEGI_02230 Sequoiadendron giganteum HOM05D003234 ORTHO05D003635 2.2e-06 55.8 68 47.1
THA.LOC104813762 Tarenaya hassleriana HOM05D003234 ORTHO05D003635 2.2e-06 55.8 107 36.4
CiPaw.08G071600 Carya illinoinensis HOM05D003234 ORTHO05D003635 2.9e-06 55.5 108 35.2
Migut.N03196 Erythranthe guttata HOM05D003234 ORTHO05D003635 2.9e-06 55.5 107 35.5
Thhalv10019348m.g Eutrema salsugineum HOM05D003234 ORTHO05D003635 2.9e-06 55.5 107 36.4
Lj1g0024220 Lotus japonicus HOM05D003234 ORTHO05D003635 2.9e-06 55.5 108 35.2
AT1G76185 Arabidopsis thaliana HOM05D003234 ORTHO05D003635 3.8e-06 55.1 107 37.4
Duzib041G0372 Durio zibethinus HOM05D003234 ORTHO05D003635 4.9e-06 54.7 107 36.4
FAN27G0038 Fragaria x ananassa HOM05D003234 ORTHO05D003635 4.9e-06 54.7 107 36.4
Manes.18G007200 Manihot esculenta HOM05D003234 ORTHO05D003635 4.9e-06 54.7 107 36.4
Nn6g31830 Nelumbo nucifera HOM05D003234 ORTHO05D003635 4.9e-06 54.7 108 37.0
Oeu011320.1 Olea europaea HOM05D003234 ORTHO05D003635 4.9e-06 54.7 107 37.4
Gorai.005G112900 Gossypium raimondii HOM05D003234 ORTHO05D003635 6.4e-06 54.3 107 35.5
Sc02g0009000 Simmondsia chinensis HOM05D003234 ORTHO05D003635 6.4e-06 54.3 107 35.5
TAR381G0421 Trochodendron aralioides HOM05D003234 ORTHO05D003635 6.4e-06 54.3 70 58.6
C02p33350 Brassica napus HOM05D003234 ORTHO05D003635 8.4e-06 53.9 109 34.9
PGR031G2527 Punica granatum HOM05D003234 ORTHO05D003635 8.4e-06 53.9 108 37.0
QL06p045796 Quercus lobata HOM05D003234 ORTHO05D003635 8.4e-06 53.9 38 68.4


User provided reference genes

Program Settings