Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G063000 Glycine max HOM05D006999 ORTHO05D008936 2.4e-308 1061.6 659 100.0
Phvul.002G025400 Phaseolus vulgaris HOM05D006999 ORTHO05D008936 3.1e-263 911.8 659 81.2
VMungo1215G1670 Vigna mungo HOM05D006999 ORTHO05D008936 1.2e-259 899.8 659 79.5
Ca_24822_v3 Cicer arietinum L. HOM05D006999 ORTHO05D008936 4.4e-225 785.0 667 65.5
Medtr5g019030 Medicago truncatula HOM05D006999 ORTHO05D008936 9.2e-223 777.3 657 74.6
Lj2g0003627 Lotus japonicus HOM05D006999 ORTHO05D008936 4.3e-220 768.5 656 62.0
TPR.G34465 Trifolium pratense HOM05D006999 ORTHO05D008936 1.7e-216 756.5 657 68.3
arahy.Tifrunner.gnm1.ann1.ZB5P2M Arachis hypogaea HOM05D006999 ORTHO05D008936 2.2e-216 756.1 653 65.7
Lalb_Chr09g0322731 Lupinus albus HOM05D006999 ORTHO05D008936 7.3e-212 741.1 658 69.8
Psat2g162640 Pisum sativum HOM05D006999 ORTHO05D008936 1.1e-199 700.7 660 69.4
RcHm_v2.0_Chr2g0102951 Rosa chinensis HOM05D006999 ORTHO05D008936 6.6e-197 691.4 657 57.5
QL06p044626 Quercus lobata HOM05D006999 ORTHO05D008936 2.5e-196 689.5 658 55.6
Prupe.7G147200 Prunus persica HOM05D006999 ORTHO05D008936 1.9e-191 673.3 656 61.6
CANSAT01G1763 Cannabis sativa HOM05D006999 ORTHO05D008936 4.2e-191 672.2 635 56.4
CiPaw.01G031400 Carya illinoinensis HOM05D006999 ORTHO05D008936 2.7e-190 669.5 663 56.3
FAN23G0790 Fragaria x ananassa HOM05D006999 ORTHO05D008936 7.4e-188 661.4 645 60.9
MD15G1270900 Malus domestica HOM05D006999 ORTHO05D008936 2.1e-182 643.3 639 55.1
Manes.13G134700 Manihot esculenta HOM05D006999 ORTHO05D008936 3.9e-181 639.0 627 53.7
Cfa004253 Carpinus fangiana HOM05D006999 ORTHO05D008936 7.4e-180 634.8 649 56.1
Cpa.g.sc15.132 Carica papaya HOM05D006999 ORTHO05D008936 3.7e-179 632.5 656 52.0
Thecc.01G043300 Theobroma cacao HOM05D006999 ORTHO05D008936 3.7e-179 632.5 656 52.0
FvH4_2g07140 Fragaria vesca HOM05D006999 ORTHO05D008936 6.2e-179 631.7 628 54.1
TWI73G1021 Tripterygium wilfordii HOM05D006999 ORTHO05D008936 2.0e-177 626.7 637 63.3
Gohir.D12G067100 Gossypium hirsutum HOM05D006999 ORTHO05D008936 8.4e-176 621.3 650 51.2
Gorai.008G070500 Gossypium raimondii HOM05D006999 ORTHO05D008936 8.4e-176 621.3 650 51.2
Duzib147G0594 Durio zibethinus HOM05D006999 ORTHO05D008936 5.5e-175 618.6 634 53.2
Sabra05G0104700 Salix brachista HOM05D006999 ORTHO05D008936 7.9e-174 614.8 635 52.3
Potri.005G128600 Populus trichocarpa HOM05D006999 ORTHO05D008936 1.3e-173 614.0 636 52.5
Gohir.A12G066700 Gossypium hirsutum HOM05D006999 ORTHO05D008936 3.0e-173 612.8 634 52.8
GSVIVG01019040001 Vitis vinifera HOM05D006999 ORTHO05D008936 6.3e-171 605.1 656 50.0
Aa31LG1G15180 Aethionema arabicum HOM05D006999 ORTHO05D008936 4.1e-162 575.9 659 47.6
THA.LOC104826827 Tarenaya hassleriana HOM05D006999 ORTHO05D008936 6.9e-162 575.1 650 47.5
Dinv39939 Davidia involucrata HOM05D006999 ORTHO05D008936 1.5e-161 573.9 658 52.0
AT5G66631 Arabidopsis thaliana HOM05D006999 ORTHO05D008936 6.5e-160 568.5 634 48.4
Eucgr.I02485 Eucalyptus grandis HOM05D006999 ORTHO05D008936 2.1e-158 563.5 639 54.1
CARHR281110 Cardamine hirsuta HOM05D006999 ORTHO05D008936 2.2e-155 553.5 632 47.6
TAR381G1039 Trochodendron aralioides HOM05D006999 ORTHO05D008936 2.2e-155 553.5 664 60.2
Thhalv10005592m.g Eutrema salsugineum HOM05D006999 ORTHO05D008936 8.2e-155 551.6 656 47.1
AL8G44870 Arabidopsis lyrata HOM05D006999 ORTHO05D008936 3.5e-153 546.2 634 47.0
Cc05_g07730 Coffea canephora HOM05D006999 ORTHO05D008936 5.9e-153 545.4 631 46.6
MSTRG.15411 Avicennia marina HOM05D006999 ORTHO05D008936 2.9e-152 543.1 624 47.4
Dinv29387 Davidia involucrata HOM05D006999 ORTHO05D008936 6.5e-152 542.0 636 49.8
BcaB02g10006 Brassica carinata HOM05D006999 ORTHO05D008936 1.4e-151 540.8 645 47.9
CSS0009159 Camellia sinensis var. sinensis HOM05D006999 ORTHO05D008936 5.5e-151 538.9 651 48.4
Migut.K00852 Erythranthe guttata HOM05D006999 ORTHO05D008936 7.2e-151 538.5 624 47.0
Nitab4.5_0000090g0200 Nicotiana tabacum HOM05D006999 ORTHO05D008936 7.2e-151 538.5 657 58.3
Nn5g29479 Nelumbo nucifera HOM05D006999 ORTHO05D008936 2.1e-150 537.0 627 54.7
CSS0003698 Camellia sinensis var. sinensis HOM05D006999 ORTHO05D008936 2.7e-150 536.6 651 48.2
Aqoxy6G01000 Aquilegia oxysepala HOM05D006999 ORTHO05D008936 8.0e-150 535.0 630 48.7
Sp2g30070 Schrenkiella parvula HOM05D006999 ORTHO05D008936 1.0e-149 534.6 635 46.5
Nitab4.5_0004292g0030 Nicotiana tabacum HOM05D006999 ORTHO05D008936 3.9e-149 532.7 657 57.8
Oeu049321.1 Olea europaea HOM05D006999 ORTHO05D008936 3.9e-149 532.7 657 45.2
RcHm_v2.0_Chr2g0102871 Rosa chinensis HOM05D006999 ORTHO05D008936 8.8e-149 531.6 520 57.1
A07p17310 Brassica napus HOM05D006999 ORTHO05D008936 2.0e-148 530.4 642 46.9
BolC7t43049H Brassica oleracea HOM05D006999 ORTHO05D008936 4.4e-148 529.3 640 46.9
BraA07t29457Z Brassica rapa HOM05D006999 ORTHO05D008936 1.3e-147 527.7 635 46.8
Solyc02g065510.1 Solanum lycopersicum HOM05D006999 ORTHO05D008936 2.2e-147 526.9 623 54.1
BcaC06g34726 Brassica carinata HOM05D006999 ORTHO05D008936 2.8e-147 526.6 635 46.5
Oeu049309.1 Olea europaea HOM05D006999 ORTHO05D008936 6.3e-147 525.4 657 44.6
PGSC0003DMG400001186 Solanum tuberosum HOM05D006999 ORTHO05D008936 6.3e-147 525.4 623 53.5
Sopen02g015710 Solanum pennellii HOM05D006999 ORTHO05D008936 1.1e-146 524.6 623 53.3
Haze_15147 Corylus avellana HOM05D000909 ORTHO05D000928 4.1e-146 522.7 656 48.3
Ciclev10027580m.g Citrus clementina HOM05D006999 ORTHO05D008936 7.0e-146 521.9 637 59.8
Rhsim02G0229300 Rhododendron simsii HOM05D006999 ORTHO05D008936 4.5e-145 519.2 656 56.4
FvH4_1g14280 Fragaria vesca HOM05D006999 ORTHO05D008936 1.7e-144 517.3 507 54.0
vmacro00136 Vaccinium macrocarpon HOM05D006999 ORTHO05D008936 2.9e-144 516.5 656 54.9
PSO541G6186 Papaver somniferum HOM05D006999 ORTHO05D008936 1.5e-143 514.2 631 44.4
Atru.chr3.494 Acer truncatum HOM05D006999 ORTHO05D008936 7.2e-143 511.9 499 55.9
Sc03g0001020 Simmondsia chinensis HOM05D006999 ORTHO05D008936 1.6e-142 510.8 637 51.6
CAN.G93.18 Capsicum annuum HOM05D006999 ORTHO05D008936 6.1e-142 508.8 660 55.5
DCAR_026261 Daucus carota HOM05D006999 ORTHO05D008936 6.8e-141 505.4 639 44.8
SalBow1G0035 Salvia bowleyana HOM05D006999 ORTHO05D008936 6.8e-141 505.4 623 44.9
Peaxi162Scf00019g00154 Petunia axillaris HOM05D006999 ORTHO05D008936 3.4e-140 503.1 623 52.8
Rhsim02G0225000 Rhododendron simsii HOM05D006999 ORTHO05D008936 6.3e-139 498.8 557 54.6
SGA_v2.0_scaffold62G21537 Striga asiatica HOM05D006999 ORTHO05D008936 6.3e-139 498.8 646 43.5
ECA232G3871 Erigeron canadensis HOM05D006999 ORTHO05D008936 9.1e-130 468.4 621 49.3
Lj4P134T41 Lonicera japonica HOM05D006999 ORTHO05D008936 1.3e-128 464.5 512 48.0
AUR62008030 Chenopodium quinoa HOM05D006999 ORTHO05D008936 2.1e-126 457.2 659 46.6
Carub.0008s2788 Capsella rubella HOM05D006999 ORTHO05D008936 2.3e-125 453.8 514 47.1
EL10Ac6g14872 Beta vulgaris HOM05D006999 ORTHO05D008936 1.5e-124 451.1 659 51.6
Ah.02g126330 Amaranthus hybridus HOM05D006999 ORTHO05D008936 2.2e-123 447.2 652 45.9
MBI16_g10978_MAGBIO Magnolia biondii HOM05D006999 ORTHO05D003554 6.3e-123 445.7 631 54.5
Actinidia36538 Actinidia chinensis HOM05D006999 ORTHO05D008936 1.1e-122 444.9 663 49.2
C07p25190 Brassica napus HOM05D006999 ORTHO05D008936 1.1e-122 444.9 538 44.8
Oeu049317.1 Olea europaea HOM05D006999 ORTHO05D008936 5.9e-121 439.1 558 44.3
HanXRQChr09g0265111 Helianthus annuus HOM05D006999 ORTHO05D008936 7.3e-119 432.2 621 46.7
HPP92_025826 Vanilla planifolia HOM05D006999 ORTHO05D008936 5.0e-112 409.5 627 41.1
Glyma.01G179251 Glycine max HOM05D006999 ORTHO05D008936 5.2e-101 372.9 274 78.5
ATR0782G111 Amborella trichopoda HOM05D006999 ORTHO05D008936 1.4e-98 364.8 678 35.7
Os01g0167750 Oryza sativa ssp. japonica HOM05D006999 ORTHO05D008936 2.5e-95 354.0 631 40.4
CDE01G0819 Ceratophyllum demersum HOM05D006999 ORTHO05D008936 1.1e-93 348.6 640 36.2
Hma1.2p1_2980F.1_g331210 Hydrangea macrophylla HOM05D006999 ORTHO05D008936 4.4e-92 343.2 544 38.2
Zm00001eb123240 Zea mays HOM05D006999 ORTHO05D008936 9.9e-92 342.0 624 43.6
SEGI_35610 Sequoiadendron giganteum HOM05D006999 ORTHO05D008936 3.8e-91 340.1 640 39.2
Dinv18613 Davidia involucrata HOM05D006999 ORTHO05D008936 4.0e-85 320.1 630 35.4
Dinv26229 Davidia involucrata HOM05D006999 ORTHO05D008936 4.0e-85 320.1 630 35.4
Glyma.01G179201 Glycine max HOM05D006999 ORTHO05D008936 1.1e-77 295.4 213 95.3
Cfa021547 Carpinus fangiana HOM05D006999 ORTHO05D008936 3.4e-76 290.4 651 35.3
Haze_25752 Corylus avellana HOM05D006999 ORTHO05D008936 3.5e-73 280.4 641 32.1
unitig_748.g8403 Utricularia gibba HOM05D006999 ORTHO05D008936 1.0e-67 262.3 370 39.7
Cfa003411 Carpinus fangiana HOM05D006999 ORTHO05D008936 6.9e-53 213.0 612 33.0
unitig_748.g8404 Utricularia gibba HOM05D006999 ORTHO05D008936 1.3e-46 192.2 231 46.3
COL.COLO4_22153 Corchorus olitorius HOM05D000225 ORTHO05D003554 7.0e-37 159.8 199 47.7
FAN28G3023 Fragaria x ananassa HOM05D006999 ORTHO05D008936 1.8e-32 145.2 178 41.6
Aa31LG1G15170 Aethionema arabicum HOM05D000909 ORTHO05D008936 1.7e-27 128.6 147 51.7
Actinidia12102 Actinidia chinensis HOM05D006999 ORTHO05D008936 1.8e-24 118.6 150 46.7
HanXRQChr09g0268161 Helianthus annuus HOM05D006999 ORTHO05D008936 1.2e-20 105.9 150 42.0
FvH4_1g14250 Fragaria vesca HOM05D000909 ORTHO05D000928 4.3e-10 70.9 162 32.7
CSS0034431 Camellia sinensis var. sinensis HOM05D007157 ORTHO05D009045 4.7e-09 67.4 211 28.9
PSO675G3775 Papaver somniferum HOM05D006749 ORTHO05D008352 4.7e-09 67.4 191 26.2
EL10Ac6g14214 Beta vulgaris HOM05D006999 ORTHO05D008936 1.8e-08 65.5 137 32.1
AagrBONN_evm.TU.Sc2ySwM_344.143 Anthoceros agrestis HOM05D004079 ORTHO05D008936 2.3e-08 65.1 115 29.6
GSVIVG01017111001 Vitis vinifera HOM05D006749 ORTHO05D008352 2.3e-08 65.1 193 26.4
CDE05G0489 Ceratophyllum demersum HOM05D007202 ORTHO05D009125 3.0e-08 64.7 168 26.2
Actinidia36218 Actinidia chinensis HOM05D007157 ORTHO05D009045 4.0e-08 64.3 198 27.3
CSS0018907 Camellia sinensis var. sinensis HOM05D006749 ORTHO05D008352 5.2e-08 63.9 193 25.9
QL05p024247 Quercus lobata HOM05D006749 ORTHO05D008352 6.8e-08 63.5 193 25.9
AagrBONN_evm.TU.Sc2ySwM_228.1608 Anthoceros agrestis HOM05D004079 ORTHO05D008352 1.5e-07 62.4 161 26.7
SEGI_11175 Sequoiadendron giganteum HOM05D007202 ORTHO05D009125 2.0e-07 62.0 158 27.2
AUR62016443 Chenopodium quinoa HOM05D006749 ORTHO05D008352 2.6e-07 61.6 193 25.4
Nitab4.5_0000519g0020 Nicotiana tabacum HOM05D007157 ORTHO05D009045 2.6e-07 61.6 207 25.6
Sabra01G0146900 Salix brachista HOM05D006749 ORTHO05D008352 3.4e-07 61.2 194 26.3
PGSC0003DMG400020245 Solanum tuberosum HOM05D007157 ORTHO05D009045 4.4e-07 60.8 205 25.4
Actinidia08976 Actinidia chinensis HOM05D006749 ORTHO05D008352 5.7e-07 60.5 193 25.9
ATR1149G109 Amborella trichopoda HOM05D007202 ORTHO05D009125 9.8e-07 59.7 190 26.3
arahy.Tifrunner.gnm1.ann1.EU7MKH Arachis hypogaea HOM05D007202 ORTHO05D009125 9.8e-07 59.7 151 29.1
Lalb_Chr02g0154271 Lupinus albus HOM05D006596 ORTHO05D008497 9.8e-07 59.7 159 25.8
Rhsim12G0197800 Rhododendron simsii HOM05D006749 ORTHO05D008352 9.8e-07 59.7 193 24.9
Sopen02g038950 Solanum pennellii HOM05D007157 ORTHO05D009045 9.8e-07 59.7 207 24.2
COL.COLO4_13293 Corchorus olitorius HOM05D000485 ORTHO05D009045 1.7e-06 58.9 210 26.2
Potri.001G180000 Populus trichocarpa HOM05D006749 ORTHO05D008352 2.2e-06 58.5 194 25.8
Sp3g14360 Schrenkiella parvula HOM05D006749 ORTHO05D008352 2.2e-06 58.5 194 26.3
Nn7g37484 Nelumbo nucifera HOM05D007202 ORTHO05D009125 2.9e-06 58.2 175 25.7
Hund00615 Selenicereus undatus HOM05D006749 ORTHO05D008352 2.9e-06 58.2 193 24.4
arahy.Tifrunner.gnm1.ann1.U9PBTF Arachis hypogaea HOM05D007202 ORTHO05D009125 3.7e-06 57.8 151 28.5
MD02G1156600 Malus domestica HOM05D006999 ORTHO05D008936 3.7e-06 57.8 156 30.1
Phvul.002G208300 Phaseolus vulgaris HOM05D007661 ORTHO05D009671 3.7e-06 57.8 153 30.1
Prupe.3G071400 Prunus persica HOM05D006749 ORTHO05D008352 3.7e-06 57.8 193 25.9
Solyc02g094310.3 Solanum lycopersicum HOM05D007157 ORTHO05D009045 3.7e-06 57.8 155 25.8
Nitab4.5_0005858g0130 Nicotiana tabacum HOM05D000485 ORTHO05D009045 4.9e-06 57.4 155 27.1
Duzib147G0388 Durio zibethinus HOM05D007157 ORTHO05D009045 6.4e-06 57.0 175 25.7
PGR142G1500 Punica granatum HOM05D007202 ORTHO05D009125 6.4e-06 57.0 180 26.1
BraA10t44501Z Brassica rapa HOM05D007157 ORTHO05D009045 8.3e-06 56.6 197 25.9
HanXRQChr13g0392131 Helianthus annuus HOM05D007202 ORTHO05D009125 8.3e-06 56.6 176 22.2
Lj5A824G14 Lonicera japonica HOM05D007157 ORTHO05D009045 8.3e-06 56.6 187 26.2
MD09G1008000 Malus domestica HOM05D007157 ORTHO05D009045 8.3e-06 56.6 211 23.7


User provided reference genes

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