Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G061500 Glycine max HOM05D003252 ORTHO05D003640 6.0e-43 177.2 94 100.0
Glyma.17G050600 Glycine max HOM05D003252 ORTHO05D003640 5.6e-25 117.5 80 73.8
VMungo1215G3032 Vigna mungo HOM05D003252 ORTHO05D003640 1.3e-21 106.3 80 71.2
Medtr4g125530 Medicago truncatula HOM05D003252 ORTHO05D003640 2.9e-21 105.1 85 62.4
Ca_21312_v3 Cicer arietinum L. HOM05D003252 ORTHO05D003640 3.8e-21 104.8 80 65.0
Phvul.003G132200 Phaseolus vulgaris HOM05D003252 ORTHO05D003640 2.5e-20 102.1 80 68.8
Lalb_Chr13g0299531 Lupinus albus HOM05D003252 ORTHO05D003640 4.2e-20 101.3 83 65.1
arahy.Tifrunner.gnm1.ann1.25CQ7A Arachis hypogaea HOM05D003252 ORTHO05D003640 1.6e-19 99.4 83 61.4
arahy.Tifrunner.gnm1.ann1.B65556 Arachis hypogaea HOM05D003252 ORTHO05D003640 1.6e-19 99.4 83 61.4
Psat4g017400 Pisum sativum HOM05D003252 ORTHO05D003640 3.5e-19 98.2 80 58.8
Lj4g0014141 Lotus japonicus HOM05D003252 ORTHO05D003640 9.7e-17 90.1 80 55.0
Lj3g0017073 Lotus japonicus HOM05D003252 ORTHO05D003640 1.3e-16 89.7 80 57.5
Manes.03G039000 Manihot esculenta HOM05D003252 ORTHO05D003640 4.1e-15 84.7 83 55.4
Manes.16G097000 Manihot esculenta HOM05D003252 ORTHO05D003640 4.1e-15 84.7 83 56.6
Sabra11G0116400 Salix brachista HOM05D003252 ORTHO05D003640 4.5e-14 81.3 79 54.4
MD15G1215300 Malus domestica HOM05D003252 ORTHO05D003640 7.7e-14 80.5 83 50.6
CiPaw.04G145000 Carya illinoinensis HOM05D003252 ORTHO05D003640 2.2e-13 79.0 84 53.6
Dinv42374 Davidia involucrata HOM05D003252 ORTHO05D003640 2.9e-13 78.6 83 54.2
Potri.001G413500 Populus trichocarpa HOM05D003252 ORTHO05D003640 2.9e-13 78.6 75 57.3
Potri.011G125701 Populus trichocarpa HOM05D003252 ORTHO05D003640 2.9e-13 78.6 79 53.2
Sabra16G0273800 Salix brachista HOM05D003252 ORTHO05D003640 2.9e-13 78.6 84 52.4
Sabra16G0274300 Salix brachista HOM05D003252 ORTHO05D003640 2.9e-13 78.6 84 52.4
Sabra16G0278400 Salix brachista HOM05D003252 ORTHO05D003640 2.9e-13 78.6 84 52.4
Eucgr.C03557 Eucalyptus grandis HOM05D003252 ORTHO05D003640 5.0e-13 77.8 83 51.8
TWI63G0970 Tripterygium wilfordii HOM05D003252 ORTHO05D003640 6.5e-13 77.4 83 50.6
CANSAT46G0002 Cannabis sativa HOM05D003252 ORTHO05D003640 8.5e-13 77.0 84 51.2
CANSAT56G4065 Cannabis sativa HOM05D003252 ORTHO05D003640 8.5e-13 77.0 84 51.2
QL02p060735 Quercus lobata HOM05D003252 ORTHO05D003640 8.5e-13 77.0 84 47.6
CAN.G198.16 Capsicum annuum HOM05D003252 ORTHO05D003640 1.4e-12 76.3 83 51.8
QL02p060441 Quercus lobata HOM05D003252 ORTHO05D003640 1.4e-12 76.3 85 49.4
CiPaw.03G208300 Carya illinoinensis HOM05D003252 ORTHO05D003640 4.2e-12 74.7 84 52.4
Atru.chr7.1677 Acer truncatum HOM05D003252 ORTHO05D003640 5.5e-12 74.3 83 50.6
Dinv25571 Davidia involucrata HOM05D003252 ORTHO05D003640 5.5e-12 74.3 84 50.0
Hma1.2p1_0797F.1_g219490 Hydrangea macrophylla HOM05D003252 ORTHO05D003640 5.5e-12 74.3 82 51.2
Cfa003021 Carpinus fangiana HOM05D003252 ORTHO05D003640 7.2e-12 73.9 84 50.0
FvH4_1g08350 Fragaria vesca HOM05D003252 ORTHO05D003640 7.2e-12 73.9 84 48.8
FAN19G2299 Fragaria x ananassa HOM05D003252 ORTHO05D003640 7.2e-12 73.9 84 48.8
Prupe.7G202000 Prunus persica HOM05D003252 ORTHO05D003640 7.2e-12 73.9 83 44.6
Haze_25978 Corylus avellana HOM05D003252 ORTHO05D003640 9.4e-12 73.6 84 48.8
Peaxi162Scf00073g00132 Petunia axillaris HOM05D003252 ORTHO05D003640 9.4e-12 73.6 83 49.4
FAN26G2855 Fragaria x ananassa HOM05D003252 ORTHO05D003640 1.2e-11 73.2 84 47.6
FAN26G3461 Fragaria x ananassa HOM05D003252 ORTHO05D003640 1.2e-11 73.2 84 47.6
Peaxi162Scf00128g00142 Petunia axillaris HOM05D003252 ORTHO05D003640 1.2e-11 73.2 83 49.4
FAN28G2135 Fragaria x ananassa HOM05D003252 ORTHO05D003640 1.6e-11 72.8 84 47.6
Nn6g35602 Nelumbo nucifera HOM05D003252 ORTHO05D003640 1.6e-11 72.8 83 48.2
Nitab4.5_0000343g0050 Nicotiana tabacum HOM05D003252 ORTHO05D003640 2.7e-11 72.0 84 50.0
Sed0020871 Sechium edule HOM05D003252 ORTHO05D003640 2.7e-11 72.0 74 55.4
TAR636G0880 Trochodendron aralioides HOM05D003252 ORTHO05D003640 2.7e-11 72.0 83 49.4
vmacro06324 Vaccinium macrocarpon HOM05D003252 ORTHO05D003640 3.6e-11 71.6 87 47.1
Sopen07g021020 Solanum pennellii HOM05D003252 ORTHO05D003640 6.1e-11 70.9 83 50.6
Cpa.g.sc28.70 Carica papaya HOM05D003252 ORTHO05D003640 7.9e-11 70.5 84 46.4
Rhsim03G0229500 Rhododendron simsii HOM05D003252 ORTHO05D003640 7.9e-11 70.5 87 46.0
Solyc07g041490.3 Solanum lycopersicum HOM05D003252 ORTHO05D003640 7.9e-11 70.5 83 49.4
PGSC0003DMG400019568 Solanum tuberosum HOM05D003252 ORTHO05D003640 7.9e-11 70.5 83 50.6
Thecc.09G079800 Theobroma cacao HOM05D003252 ORTHO05D003640 7.9e-11 70.5 83 47.0
Lsat_1_v5_gn_5_141361 Lactuca sativa HOM05D003252 ORTHO05D003640 1.0e-10 70.1 83 47.0
Migut.L01549 Erythranthe guttata HOM05D003252 ORTHO05D003640 1.4e-10 69.7 83 50.6
Oeu010808.1 Olea europaea HOM05D003252 ORTHO05D003640 1.4e-10 69.7 83 43.4
Oeu063412.1 Olea europaea HOM05D003252 ORTHO05D003640 1.4e-10 69.7 83 43.4
PGR044G0627 Punica granatum HOM05D003252 ORTHO05D003640 1.4e-10 69.7 74 55.4
GSVIVG01015103001 Vitis vinifera HOM05D003252 ORTHO05D003640 1.8e-10 69.3 84 44.0
CiPaw.09G059300 Carya illinoinensis HOM05D003252 ORTHO05D003640 2.3e-10 68.9 85 47.1
Ciclev10012522m.g Citrus clementina HOM05D003252 ORTHO05D003640 2.3e-10 68.9 87 47.1
CsaV3_2G001200 Cucumis sativus L. HOM05D003252 ORTHO05D003640 2.3e-10 68.9 76 50.0
Lalb_Chr07g0181081 Lupinus albus HOM05D003252 ORTHO05D003640 2.3e-10 68.9 80 50.0
Carub.0004s1297 Capsella rubella HOM05D003252 ORTHO05D003640 3.0e-10 68.6 83 43.4
Gohir.A07G014600 Gossypium hirsutum HOM05D003252 ORTHO05D003640 3.0e-10 68.6 83 44.6
Gohir.D07G014300 Gossypium hirsutum HOM05D003252 ORTHO05D003640 3.0e-10 68.6 83 45.8
Gorai.001G015100 Gossypium raimondii HOM05D003252 ORTHO05D003640 3.0e-10 68.6 83 45.8
AT2G31670 Arabidopsis thaliana HOM05D003252 ORTHO05D003640 3.9e-10 68.2 83 44.6
MSTRG.10521 Avicennia marina HOM05D003252 ORTHO05D003640 3.9e-10 68.2 83 48.2
Cfa000438 Carpinus fangiana HOM05D003252 ORTHO05D003640 3.9e-10 68.2 85 50.6
Sp3g21430 Schrenkiella parvula HOM05D003252 ORTHO05D003640 3.9e-10 68.2 83 44.6
Aa31sc437G20 Aethionema arabicum HOM05D003252 ORTHO05D003640 5.1e-10 67.8 83 47.0
MELO3C004648.2 Cucumis melo HOM05D003252 ORTHO05D003640 5.1e-10 67.8 76 50.0
DCAR_000225 Daucus carota HOM05D003252 ORTHO05D003640 6.7e-10 67.4 83 47.0
A01p31300 Brassica napus HOM05D003252 ORTHO05D003640 8.8e-10 67.0 83 43.4
C01p39910 Brassica napus HOM05D003252 ORTHO05D003640 8.8e-10 67.0 83 43.4
BolC1t03946H Brassica oleracea HOM05D003252 ORTHO05D003640 8.8e-10 67.0 83 43.4
Cc06_g11990 Coffea canephora HOM05D003252 ORTHO05D003640 8.8e-10 67.0 83 45.8
BraA01t03256Z Brassica rapa HOM05D003252 ORTHO05D003640 1.1e-09 66.6 83 43.4
Aqoxy7G04125 Aquilegia oxysepala HOM05D003252 ORTHO05D003640 1.5e-09 66.2 80 46.2
ECA233G4986 Erigeron canadensis HOM05D003252 ORTHO05D003640 1.5e-09 66.2 83 47.0
HanXRQChr10g0319651 Helianthus annuus HOM05D003252 ORTHO05D003640 1.5e-09 66.2 83 42.2
Gohir.A05G033001 Gossypium hirsutum HOM05D003252 ORTHO05D003640 2.0e-09 65.9 83 43.4
Gohir.D05G034500 Gossypium hirsutum HOM05D003252 ORTHO05D003640 2.0e-09 65.9 83 43.4
Gorai.009G034900 Gossypium raimondii HOM05D003252 ORTHO05D003640 2.0e-09 65.9 81 45.7
Lj7C684T3 Lonicera japonica HOM05D003252 ORTHO05D003640 2.0e-09 65.9 83 41.0
Lj6g0011531 Lotus japonicus HOM05D003252 ORTHO05D003640 2.0e-09 65.9 74 52.7
RcHm_v2.0_Chr2g0094401 Rosa chinensis HOM05D003252 ORTHO05D003640 2.5e-09 65.5 74 52.7
THA.LOC104815326 Tarenaya hassleriana HOM05D003252 ORTHO05D003640 2.5e-09 65.5 83 44.6
TWI32G0380 Tripterygium wilfordii HOM05D003252 ORTHO05D003640 2.5e-09 65.5 84 46.4
COL.COLO4_18119 Corchorus olitorius HOM05D003252 ORTHO05D003640 3.3e-09 65.1 83 41.0
Haze_06476 Corylus avellana HOM05D003252 ORTHO05D003640 3.3e-09 65.1 85 48.2
SGA_v2.0_scaffold385G50444 Striga asiatica HOM05D003252 ORTHO05D003640 4.3e-09 64.7 83 45.8
MBI19_g11841_MAGBIO Magnolia biondii HOM05D003252 ORTHO05D003640 5.7e-09 64.3 83 44.6
Actinidia30206 Actinidia chinensis HOM05D000061 ORTHO05D000050 9.7e-09 63.5 83 42.2
Thhalv10002638m.g Eutrema salsugineum HOM05D003252 ORTHO05D003640 9.7e-09 63.5 83 44.6
Glyma.13G108800 Glycine max HOM05D003252 ORTHO05D003640 9.7e-09 63.5 80 43.8
Aa31sc893G10 Aethionema arabicum HOM05D003252 ORTHO05D003640 1.3e-08 63.2 83 45.8
ClCG11G001480 Citrullus lanatus HOM05D003252 ORTHO05D003640 1.3e-08 63.2 76 46.1
unitig_8.g4275 Utricularia gibba HOM05D003252 ORTHO05D003640 1.3e-08 63.2 83 42.2
Ah.09g231370 Amaranthus hybridus HOM05D003252 ORTHO05D003640 1.7e-08 62.8 87 39.1
Peaxi162Scf00127g00006 Petunia axillaris HOM05D003252 ORTHO05D003640 1.7e-08 62.8 63 49.2
Ca_06729_v3 Cicer arietinum L. HOM05D003252 ORTHO05D003640 2.2e-08 62.4 82 40.2
Lj7C684T2 Lonicera japonica HOM05D003252 ORTHO05D003640 2.2e-08 62.4 83 42.2
Medtr0121s0060 Medicago truncatula HOM05D003252 ORTHO05D003640 2.8e-08 62.0 82 40.2
AL4G26910 Arabidopsis lyrata HOM05D003252 ORTHO05D003640 3.7e-08 61.6 83 39.8
BcaB04g20425 Brassica carinata HOM05D003252 ORTHO05D003640 4.8e-08 61.2 82 41.5
CARHR125300 Cardamine hirsuta HOM05D003252 ORTHO05D003640 4.8e-08 61.2 83 41.0
CSS0012521 Camellia sinensis var. sinensis HOM05D003252 ORTHO05D003640 8.2e-08 60.5 84 45.2
Glyma.15G176100 Glycine max HOM05D003252 ORTHO05D003640 1.1e-07 60.1 75 49.3
QL05p040193 Quercus lobata HOM05D003252 ORTHO05D003640 1.4e-07 59.7 88 45.5
TPR.G9445 Trifolium pratense HOM05D003252 ORTHO05D003640 1.4e-07 59.7 85 42.4
vmacro06325 Vaccinium macrocarpon HOM05D003252 ORTHO05D003640 1.4e-07 59.7 87 40.2
Aqoxy7G04115 Aquilegia oxysepala HOM05D003252 ORTHO05D003640 1.8e-07 59.3 83 41.0
Hma1.2p1_0169F.1_g074670 Hydrangea macrophylla HOM05D003252 ORTHO05D003640 1.8e-07 59.3 78 44.9
Lj4g0019774 Lotus japonicus HOM05D003252 ORTHO05D003640 1.8e-07 59.3 81 43.2
PSO210G6784 Papaver somniferum HOM05D003252 ORTHO05D003640 1.8e-07 59.3 75 44.0
Atru.chr7.1676 Acer truncatum HOM05D003252 ORTHO05D003640 3.1e-07 58.5 83 38.6
arahy.Tifrunner.gnm1.ann1.R4HL53 Arachis hypogaea HOM05D003252 ORTHO05D003640 3.1e-07 58.5 79 43.0
CDE11G0452 Ceratophyllum demersum HOM05D003252 ORTHO05D003640 3.1e-07 58.5 84 40.5
AUR62025184 Chenopodium quinoa HOM05D003252 ORTHO05D003640 3.1e-07 58.5 87 39.1
AUR62028990 Chenopodium quinoa HOM05D003252 ORTHO05D003640 3.1e-07 58.5 87 37.9
AUR62011596 Chenopodium quinoa HOM05D003252 ORTHO05D003640 4.1e-07 58.2 83 41.0
Psat1g133280 Pisum sativum HOM05D003252 ORTHO05D003640 4.1e-07 58.2 79 40.5
Ca_21311_v3 Cicer arietinum L. HOM05D003252 ORTHO05D003640 5.3e-07 57.8 74 43.2
AUR62016411 Chenopodium quinoa HOM05D003252 ORTHO05D003640 9.1e-07 57.0 87 36.8
PSO386G0167 Papaver somniferum HOM05D003252 ORTHO05D003640 9.1e-07 57.0 89 42.7
HanXRQChr12g0355351 Helianthus annuus HOM05D003252 ORTHO05D003640 1.2e-06 56.6 83 39.8
Lsat_1_v5_gn_5_141381 Lactuca sativa HOM05D003252 ORTHO05D003640 1.2e-06 56.6 83 39.8
SpUn0424_0010 Schrenkiella parvula HOM05D003252 ORTHO05D003640 1.2e-06 56.6 84 45.2
arahy.Tifrunner.gnm1.ann1.MZL9F0 Arachis hypogaea HOM05D003252 ORTHO05D003640 2.0e-06 55.8 79 43.0
VMungo1309G1999 Vigna mungo HOM05D003252 ORTHO05D003640 2.0e-06 55.8 89 39.3
Aqoxy3G03348 Aquilegia oxysepala HOM05D003252 ORTHO05D003640 2.6e-06 55.5 83 41.0
Oeu035904.1 Olea europaea HOM05D003252 ORTHO05D003640 3.4e-06 55.1 83 39.8
Eucgr.K03106 Eucalyptus grandis HOM05D003252 ORTHO05D003640 4.5e-06 54.7 84 42.9
Lsat_1_v5_gn_7_13541 Lactuca sativa HOM05D003252 ORTHO05D003640 5.9e-06 54.3 83 39.8


User provided reference genes

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