Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G061000 Glycine max HOM05D004401 ORTHO05D005169 8.6e-247 856.7 476 100.0
Glyma.01G181200 Glycine max HOM05D004401 ORTHO05D005169 6.6e-231 803.9 476 94.5
Phvul.002G023700 Phaseolus vulgaris HOM05D004401 ORTHO05D005169 1.4e-188 663.3 474 81.6
VMungo1215G0638 Vigna mungo HOM05D004401 ORTHO05D005169 9.1e-188 660.6 475 81.5
TPR.G29860 Trifolium pratense HOM05D004401 ORTHO05D005169 4.7e-176 621.7 475 76.0
Ca_24810_v3 Cicer arietinum L. HOM05D004401 ORTHO05D005169 3.0e-175 619.0 482 73.9
arahy.Tifrunner.gnm1.ann1.6IB1GK Arachis hypogaea HOM05D004401 ORTHO05D005169 7.0e-172 607.8 523 72.1
Medtr5g018600 Medicago truncatula HOM05D004401 ORTHO05D005169 1.1e-164 583.9 474 73.2
arahy.Tifrunner.gnm1.ann1.ZW82SR Arachis hypogaea HOM05D004401 ORTHO05D005169 4.5e-163 578.6 517 69.8
Lalb_Chr09g0322851 Lupinus albus HOM05D004401 ORTHO05D005169 2.9e-162 575.9 473 72.9
Lalb_Chr05g0213081 Lupinus albus HOM05D004401 ORTHO05D005169 3.8e-162 575.5 473 71.7
Lj2g0012735 Lotus japonicus HOM05D004401 ORTHO05D005169 1.3e-154 550.4 481 71.9
QL06p044258 Quercus lobata HOM05D004401 ORTHO05D005169 5.8e-134 481.9 420 65.2
Haze_15165 Corylus avellana HOM05D004401 ORTHO05D005169 7.5e-134 481.5 482 61.2
Cfa004233 Carpinus fangiana HOM05D004401 ORTHO05D005169 4.1e-132 475.7 483 62.5
FvH4_1g14490 Fragaria vesca HOM05D004401 ORTHO05D005169 1.5e-126 457.2 492 57.5
RcHm_v2.0_Chr2g0103241 Rosa chinensis HOM05D004401 ORTHO05D005169 1.5e-126 457.2 480 58.8
FAN19G2756 Fragaria x ananassa HOM05D004401 ORTHO05D005169 4.4e-126 455.7 492 57.5
Prupe.7G145400 Prunus persica HOM05D004401 ORTHO05D005169 5.8e-126 455.3 486 61.3
COL.COLO4_22179 Corchorus olitorius HOM05D004401 ORTHO05D005169 7.6e-126 454.9 493 56.8
CiPaw.01G029200 Carya illinoinensis HOM05D004401 ORTHO05D005169 2.2e-125 453.4 483 60.5
CSS0030032 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 2.9e-125 453.0 485 57.3
CSS0031085 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 4.1e-124 449.1 484 57.2
MD15G1273200 Malus domestica HOM05D004401 ORTHO05D005169 3.0e-122 443.0 488 57.8
Sed0006552 Sechium edule HOM05D004401 ORTHO05D005169 3.3e-121 439.5 495 56.4
Dinv39923 Davidia involucrata HOM05D004401 ORTHO05D005169 9.6e-121 438.0 487 57.1
Hma1.2p1_0739F.1_g211280 Hydrangea macrophylla HOM05D004401 ORTHO05D005169 6.2e-120 435.3 489 58.1
Eucgr.H01940 Eucalyptus grandis HOM05D004401 ORTHO05D005169 8.1e-120 434.9 417 64.7
PGR102G2627 Punica granatum HOM05D004401 ORTHO05D005169 2.4e-119 433.3 486 57.2
Potri.007G034200 Populus trichocarpa HOM05D004401 ORTHO05D005169 6.9e-119 431.8 454 58.1
Manes.13G132200 Manihot esculenta HOM05D004401 ORTHO05D005169 3.4e-118 429.5 494 57.3
Nitab4.5_0000108g0170 Nicotiana tabacum HOM05D004401 ORTHO05D005169 1.3e-117 427.6 480 56.7
RhsimUnG0212100 Rhododendron simsii HOM05D004401 ORTHO05D005169 1.4e-116 424.1 481 54.3
Nitab4.5_0005594g0020 Nicotiana tabacum HOM05D004401 ORTHO05D005169 2.4e-116 423.3 486 55.1
Atru.chr3.472 Acer truncatum HOM05D004401 ORTHO05D005169 9.3e-116 421.4 484 54.3
Potri.005G130800 Populus trichocarpa HOM05D004401 ORTHO05D005169 9.3e-116 421.4 478 56.7
Ciclev10025507m.g Citrus clementina HOM05D004401 ORTHO05D005169 1.2e-115 421.0 484 55.8
ClCG02G013050 Citrullus lanatus HOM05D004401 ORTHO05D005169 3.5e-115 419.5 487 55.9
CAN.G836.19 Capsicum annuum HOM05D004401 ORTHO05D005169 4.6e-115 419.1 479 54.9
Peaxi162Scf00535g00620 Petunia axillaris HOM05D004401 ORTHO05D005169 6.0e-115 418.7 448 57.1
Hund14120 Selenicereus undatus HOM05D004401 ORTHO05D005169 6.0e-115 418.7 431 58.5
Gohir.D03G018900 Gossypium hirsutum HOM05D004401 ORTHO05D005169 1.0e-114 417.9 493 56.4
Sopen02g034780 Solanum pennellii HOM05D004401 ORTHO05D005169 1.0e-114 417.9 479 54.9
Gorai.003G019300 Gossypium raimondii HOM05D004401 ORTHO05D005169 1.7e-114 417.2 493 56.2
Hma1.2p1_0261F.1_g104910 Hydrangea macrophylla HOM05D004401 ORTHO05D005169 2.3e-114 416.8 483 58.0
CsaV3_2G017130 Cucumis sativus L. HOM05D004401 ORTHO05D005169 3.9e-114 416.0 489 56.4
PGSC0003DMG400010033 Solanum tuberosum HOM05D004401 ORTHO05D005169 3.9e-114 416.0 479 54.3
Actinidia12088 Actinidia chinensis HOM05D004401 ORTHO05D005169 5.1e-114 415.6 480 57.1
MD02G1158400 Malus domestica HOM05D004401 ORTHO05D005169 5.1e-114 415.6 464 57.5
Cc07_g05390 Coffea canephora HOM05D004401 ORTHO05D005169 1.1e-113 414.5 494 55.3
MELO3C020916.2 Cucumis melo HOM05D004401 ORTHO05D005169 1.1e-113 414.5 498 56.2
Gohir.A02G161600 Gossypium hirsutum HOM05D004401 ORTHO05D005169 1.5e-113 414.1 491 55.8
Solyc02g090090.3 Solanum lycopersicum HOM05D004401 ORTHO05D005169 1.9e-113 413.7 479 54.7
Duzib147G0010 Durio zibethinus HOM05D004401 ORTHO05D005169 3.3e-113 412.9 503 53.7
TWI73G0228 Tripterygium wilfordii HOM05D004401 ORTHO05D005169 5.6e-113 412.1 489 56.0
Sabra07G0029800 Salix brachista HOM05D004401 ORTHO05D005169 1.1e-111 407.9 485 54.2
Gohir.D11G048500 Gossypium hirsutum HOM05D004401 ORTHO05D005169 1.4e-111 407.5 502 53.4
MSTRG.15405 Avicennia marina HOM05D004401 ORTHO05D005169 1.8e-111 407.1 478 53.3
Cpa.g.sc15.60 Carica papaya HOM05D004401 ORTHO05D005169 2.4e-111 406.8 492 52.2
Nn6g32163 Nelumbo nucifera HOM05D004401 ORTHO05D005169 2.4e-111 406.8 480 56.0
Migut.K00842 Erythranthe guttata HOM05D004401 ORTHO05D005169 3.1e-111 406.4 462 53.2
FAN28G2641 Fragaria x ananassa HOM05D004401 ORTHO05D005169 1.7e-109 400.6 494 53.6
FAN23G0479 Fragaria x ananassa HOM05D004401 ORTHO05D005169 3.8e-109 399.4 494 53.6
TAR625G0432 Trochodendron aralioides HOM05D004401 ORTHO05D005169 8.4e-109 398.3 430 59.3
FAN26G1141 Fragaria x ananassa HOM05D004401 ORTHO05D005169 1.9e-108 397.1 489 53.8
Duzib264G0051 Durio zibethinus HOM05D004401 ORTHO05D005169 2.4e-108 396.7 484 53.9
Gorai.007G052100 Gossypium raimondii HOM05D004401 ORTHO05D005169 2.4e-108 396.7 502 53.8
SalBow1G0657 Salvia bowleyana HOM05D004401 ORTHO05D005169 4.2e-108 396.0 424 57.8
Thecc.01G045700 Theobroma cacao HOM05D004401 ORTHO05D005169 4.2e-108 396.0 493 55.0
Gohir.A11G045000 Gossypium hirsutum HOM05D004401 ORTHO05D005169 1.6e-107 394.0 487 54.2
SalBow1G3467 Salvia bowleyana HOM05D004401 ORTHO05D005169 2.1e-107 393.7 424 57.5
ECA232G2743 Erigeron canadensis HOM05D004401 ORTHO05D005169 7.4e-105 385.2 466 54.1
vmacro05286 Vaccinium macrocarpon HOM05D004401 ORTHO05D005169 1.6e-104 384.0 592 46.5
CANSAT01G2530 Cannabis sativa HOM05D004401 ORTHO05D005169 2.1e-104 383.6 495 53.1
THA.LOC104807569 Tarenaya hassleriana HOM05D004401 ORTHO05D005169 2.8e-104 383.3 504 53.2
EL10Ac6g14845 Beta vulgaris HOM05D004401 ORTHO05D005169 8.1e-104 381.7 493 54.2
Oeu020614.1 Olea europaea HOM05D004401 ORTHO05D005169 4.9e-101 372.5 422 54.0
AUR62027242 Chenopodium quinoa HOM05D004401 ORTHO05D005169 1.9e-100 370.5 490 53.3
MBI16_g31340_MAGBIO Magnolia biondii HOM05D004401 ORTHO05D005169 3.2e-100 369.8 469 50.5
PSO700G0114 Papaver somniferum HOM05D004401 ORTHO05D005169 6.0e-99 365.5 423 56.5
PSO170G1133 Papaver somniferum HOM05D004401 ORTHO05D005169 1.8e-98 364.0 429 56.9
Sc03g0001200 Simmondsia chinensis HOM05D004401 ORTHO05D005169 1.1e-97 361.3 383 57.4
GSVIVG01003774001 Vitis vinifera HOM05D004401 ORTHO05D005169 9.6e-97 358.2 339 65.2
Carub.0007s0340 Capsella rubella HOM05D004401 ORTHO05D005169 4.8e-96 355.9 504 48.4
CSS0031753 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 5.3e-95 352.4 360 60.6
HanXRQChr09g0264391 Helianthus annuus HOM05D004401 ORTHO05D005169 9.0e-95 351.7 485 50.5
Sed0017517 Sechium edule HOM05D004401 ORTHO05D005169 2.6e-94 350.1 482 49.8
Thhalv10025057m.g Eutrema salsugineum HOM05D004401 ORTHO05D005169 3.4e-94 349.7 494 50.4
unitig_0.g2308 Utricularia gibba HOM05D004401 ORTHO05D005169 1.4e-92 344.4 474 49.2
BolC3t20224H Brassica oleracea HOM05D004401 ORTHO05D005169 1.9e-92 344.0 512 47.1
CARHR245290 Cardamine hirsuta HOM05D004401 ORTHO05D005169 2.5e-92 343.6 507 47.5
Rhsim08G0109400 Rhododendron simsii HOM05D004401 ORTHO05D005169 2.5e-92 343.6 495 51.7
AUR62003232 Chenopodium quinoa HOM05D004401 ORTHO05D005169 4.2e-92 342.8 482 52.1
BraA08t34203Z Brassica rapa HOM05D004401 ORTHO05D005169 4.6e-91 339.3 509 47.2
Lj4A136G82 Lonicera japonica HOM05D004401 ORTHO05D005169 6.0e-91 339.0 479 49.9
Aqoxy5G01748 Aquilegia oxysepala HOM05D004401 ORTHO05D005169 3.0e-90 336.7 479 49.9
DCAR_025670 Daucus carota HOM05D004401 ORTHO05D005169 3.9e-90 336.3 467 48.0
AL7G14010 Arabidopsis lyrata HOM05D004401 ORTHO05D005169 6.7e-90 335.5 504 46.4
Ah.02g126040 Amaranthus hybridus HOM05D004401 ORTHO05D005169 2.5e-89 333.6 471 50.5
C03p79770 Brassica napus HOM05D004401 ORTHO05D005169 1.1e-87 328.2 511 47.4
Gorai.007G208200 Gossypium raimondii HOM05D004401 ORTHO05D005169 1.5e-86 324.3 482 47.5
Ah.03g142140 Amaranthus hybridus HOM05D004401 ORTHO05D005169 2.0e-86 323.9 551 43.0
HanXRQChr15g0489601 Helianthus annuus HOM05D004401 ORTHO05D005169 5.9e-86 322.4 479 50.9
AT4G37210 Arabidopsis thaliana HOM05D004401 ORTHO05D005169 1.0e-85 321.6 435 50.6
A08p22480 Brassica napus HOM05D004401 ORTHO05D005169 1.3e-85 321.2 517 46.6
Gohir.D11G194700 Gossypium hirsutum HOM05D004401 ORTHO05D005169 2.3e-82 310.5 473 48.6
TAR381G0351 Trochodendron aralioides HOM05D004401 ORTHO05D005169 2.5e-81 307.0 492 48.2
C01p02190 Brassica napus HOM05D004401 ORTHO05D005169 1.6e-80 304.3 461 48.4
Lsat_1_v5_gn_4_177820 Lactuca sativa HOM05D004401 ORTHO05D005169 2.8e-80 303.5 475 49.3
CDE06G0525 Ceratophyllum demersum HOM05D004401 ORTHO05D005169 1.1e-79 301.6 486 45.3
vmacro17880 Vaccinium macrocarpon HOM05D004401 ORTHO05D005169 1.7e-77 294.3 589 41.1
Gohir.A11G188200 Gossypium hirsutum HOM05D004401 ORTHO05D005169 2.7e-75 287.0 481 47.2
HPP92_019643 Vanilla planifolia HOM05D004401 ORTHO05D005169 7.9e-75 285.4 489 42.5
Dinv26777 Davidia involucrata HOM05D004401 ORTHO05D005169 1.0e-74 285.0 242 68.6
SHI08724 Sapria himalayana HOM05D004401 ORTHO05D005169 2.6e-73 280.4 478 45.0
Sabra05G0106000 Salix brachista HOM05D004401 ORTHO05D005169 2.8e-72 276.9 278 59.7
CDE04G2769 Ceratophyllum demersum HOM05D004401 ORTHO05D005169 3.7e-72 276.6 509 42.2
BraA01t00189Z Brassica rapa HOM05D004401 ORTHO05D005169 6.3e-72 275.8 446 44.6
BolC1t00211H Brassica oleracea HOM05D004401 ORTHO05D005169 1.4e-71 274.6 460 46.1
A01p02010 Brassica napus HOM05D004401 ORTHO05D005169 5.9e-70 269.2 378 48.1
Os07g0122400 Oryza sativa ssp. japonica HOM05D004401 ORTHO05D005169 7.2e-68 262.3 421 46.6
ATR0733G114 Amborella trichopoda HOM05D004401 ORTHO05D005169 6.1e-67 259.2 491 42.6
Oeu032116.1 Olea europaea HOM05D004401 ORTHO05D005169 2.6e-65 253.8 260 57.7
Zm00001eb117930 Zea mays HOM05D004401 ORTHO05D005169 1.9e-60 237.7 409 44.0
Sp7g34580 Schrenkiella parvula HOM05D004401 ORTHO05D005169 4.2e-60 236.5 386 45.6
SGA_v2.0_scaffold62G21530 Striga asiatica HOM05D004401 ORTHO05D005169 3.3e-57 226.9 283 51.9
AagrBONN_evm.TU.Sc2ySwM_228.4759 Anthoceros agrestis HOM05D004401 ORTHO05D005169 1.0e-50 205.3 460 36.5
Pp3c24_5960 Physcomitrium patens HOM05D004401 ORTHO05D005169 1.8e-47 194.5 423 35.5
Aa31LG6G13770 Aethionema arabicum HOM05D004401 ORTHO05D005169 1.6e-43 181.4 295 48.1
Sc07g0000190 Simmondsia chinensis HOM05D004401 ORTHO05D005169 2.6e-41 174.1 271 45.8
Mapoly0080s0039 Marchantia polymorpha HOM05D004401 ORTHO05D005169 3.3e-36 157.1 437 33.9
Glyma.06G250700 Glycine max HOM05D004401 ORTHO05D005169 1.6e-35 154.8 76 97.4
Sabra05G0106100 Salix brachista HOM05D004401 ORTHO05D005169 6.4e-32 142.9 185 50.3
CBR_g26200 Chara braunii HOM05D004401 ORTHO05D005169 1.4e-31 141.7 480 30.8
Oeu023283.1 Olea europaea HOM05D004401 ORTHO05D005169 8.0e-27 125.9 113 58.4
Psat0s4627g0120 Pisum sativum HOM05D004401 ORTHO05D005169 1.8e-26 124.8 255 44.7
Zm00001eb178920 Zea mays HOM05D004401 ORTHO05D005169 2.6e-25 120.9 189 46.0
Pp3c8_14970 Physcomitrium patens HOM05D004401 ORTHO05D005169 7.5e-25 119.4 313 31.0
GSVIVG01003776001 Vitis vinifera HOM05D004401 ORTHO05D005169 4.9e-24 116.7 67 83.6
Zm00001eb343330 Zea mays HOM05D004401 ORTHO05D005169 2.0e-22 111.3 183 44.3
MCO16G464 Micromonas commoda HOM05D004401 ORTHO05D005169 5.0e-21 106.7 395 28.1
Psat0s4627g0080 Pisum sativum HOM05D004401 ORTHO05D005169 8.6e-21 105.9 74 77.0
Lsat_1_v5_gn_1_2961 Lactuca sativa HOM05D004401 ORTHO05D005169 4.7e-19 100.1 172 39.5
Zm00001eb130830 Zea mays HOM05D004401 ORTHO05D005169 2.3e-18 97.8 175 40.6
Zm00001eb306620 Zea mays HOM05D022290 ORTHO05D005169 5.2e-18 96.7 190 41.6
BcaNung03516 Brassica carinata HOM05D004401 ORTHO05D005169 1.5e-17 95.1 175 44.6
Rhsim06G0070300 Rhododendron simsii HOM05D000030 ORTHO05D000009 4.4e-17 93.6 169 44.4
Gohir.A12G038266 Gossypium hirsutum HOM05D004401 ORTHO05D005169 7.5e-17 92.8 101 53.5
Sc07g0000180 Simmondsia chinensis HOM05D004401 ORTHO05D005169 4.9e-16 90.1 155 40.0
Zm00001eb268170 Zea mays HOM05D004401 ORTHO05D005169 4.9e-16 90.1 190 40.5
SEGI_23846 Sequoiadendron giganteum HOM05D004401 ORTHO05D005169 1.4e-15 88.6 302 28.8
Zm00001eb250440 Zea mays HOM05D004401 ORTHO05D005169 1.1e-12 79.0 146 37.7
SMO358G0116 Selaginella moellendorffii HOM05D004401 ORTHO05D005169 2.0e-09 68.2 70 47.1
Zm00001eb182160 Zea mays HOM05D004401 ORTHO05D005169 5.8e-09 66.6 103 39.8
AL2G36200 Arabidopsis lyrata HOM05D004401 ORTHO05D005169 4.9e-08 63.5 152 39.5
Potri.002G130800 Populus trichocarpa HOM05D028338 ORTHO05D050528 1.1e-07 62.4 343 26.8
Zm00001eb268130 Zea mays HOM05D004401 ORTHO05D005169 1.9e-07 61.6 100 48.0
CDE01G0591 Ceratophyllum demersum HOM05D058208 ORTHO05D130204 2.1e-06 58.2 60 43.3


User provided reference genes

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