Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G057100 Glycine max HOM05D008581 ORTHO05D011864 2.5e-43 178.3 88 100.0
Glyma.01G185100 Glycine max HOM05D008581 ORTHO05D009966 2.4e-33 145.2 95 83.2
Phvul.002G020000 Phaseolus vulgaris HOM05D008581 ORTHO05D011864 1.3e-26 122.9 92 72.8
VMungo1215G0067 Vigna mungo HOM05D008581 ORTHO05D011864 2.8e-26 121.7 93 71.0
Lalb_Chr05g0213241 Lupinus albus HOM05D008581 ORTHO05D011864 1.6e-21 105.9 108 58.3
Phvul.003G245400 Phaseolus vulgaris HOM05D008581 ORTHO05D009966 2.2e-18 95.5 98 51.0
Psat4g087360 Pisum sativum HOM05D008581 ORTHO05D011864 4.8e-18 94.4 110 49.1
Lalb_Chr16g0378261 Lupinus albus HOM05D008581 ORTHO05D011864 1.4e-17 92.8 101 56.4
Lalb_Chr16g0378441 Lupinus albus HOM05D008581 ORTHO05D011864 1.4e-17 92.8 101 56.4
Lj4g0014874 Lotus japonicus HOM05D008581 ORTHO05D011864 2.4e-17 92.0 91 58.2
TPR.G745 Trifolium pratense HOM05D008581 ORTHO05D009966 1.0e-15 86.7 111 45.9
Ca_21178_v3 Cicer arietinum L. HOM05D008581 ORTHO05D009966 2.2e-15 85.5 108 49.1
Ca_22185_v3 Cicer arietinum L. HOM05D008581 ORTHO05D009966 2.2e-15 85.5 108 49.1
Glyma.17G176900 Glycine max HOM05D008581 ORTHO05D009966 2.1e-13 79.0 98 48.0
arahy.Tifrunner.gnm1.ann1.HVX4VE Arachis hypogaea HOM05D010906 ORTHO05D011864 3.0e-12 75.1 90 50.0
arahy.Tifrunner.gnm1.ann1.7MI303 Arachis hypogaea HOM05D010906 ORTHO05D011864 1.1e-11 73.2 90 48.9
COL.COLO4_11388 Corchorus olitorius HOM05D008581 ORTHO05D009966 1.5e-11 72.8 114 42.1
Cfa004000 Carpinus fangiana HOM05D008581 ORTHO05D009966 1.3e-10 69.7 114 41.2
TPR.G19008 Trifolium pratense HOM05D010906 ORTHO05D011864 3.7e-10 68.2 103 47.6
QL06p042132 Quercus lobata HOM05D008581 ORTHO05D009966 1.1e-09 66.6 114 41.2
QL06p042046 Quercus lobata HOM05D008581 ORTHO05D009966 1.8e-09 65.9 113 42.5
QL06p042091 Quercus lobata HOM05D008581 ORTHO05D009966 2.4e-09 65.5 113 42.5
Thecc.01G053400 Theobroma cacao HOM05D008581 ORTHO05D009966 3.1e-09 65.1 117 37.6
Sabra07G0037300 Salix brachista HOM05D008581 ORTHO05D009966 4.1e-09 64.7 111 39.6
Gohir.A02G159700 Gossypium hirsutum HOM05D013202 ORTHO05D009966 9.1e-09 63.5 96 40.6
Atru.chr3.365 Acer truncatum HOM05D008581 ORTHO05D009966 1.5e-08 62.8 124 39.5
Gorai.003G022300 Gossypium raimondii HOM05D013202 ORTHO05D009966 1.5e-08 62.8 96 40.6
Carub.0004s0265 Capsella rubella HOM05D010906 ORTHO05D011864 2.6e-08 62.0 87 47.1
Potri.005G136800 Populus trichocarpa HOM05D008581 ORTHO05D009966 2.6e-08 62.0 107 40.2
AT2G23440 Arabidopsis thaliana HOM05D010906 ORTHO05D011864 4.5e-08 61.2 66 53.0
ClCG01G016740 Citrullus lanatus HOM05D022436 ORTHO05D009966 4.5e-08 61.2 105 38.1
Gohir.D03G020800 Gossypium hirsutum HOM05D013202 ORTHO05D009966 7.7e-08 60.5 96 41.7
Gorai.003G022000 Gossypium raimondii HOM05D013202 ORTHO05D009966 7.7e-08 60.5 96 41.7
Gorai.003G022200 Gossypium raimondii HOM05D013202 ORTHO05D009966 7.7e-08 60.5 96 41.7
Potri.007G042000 Populus trichocarpa HOM05D008581 ORTHO05D009966 1.0e-07 60.1 111 38.7
Atru.chr3.367 Acer truncatum HOM05D008581 ORTHO05D009966 1.3e-07 59.7 126 34.9
Gohir.A02G159800 Gossypium hirsutum HOM05D013202 ORTHO05D009966 1.3e-07 59.7 96 40.6
MELO3C007553.2 Cucumis melo HOM05D022436 ORTHO05D009966 2.2e-07 58.9 55 54.5
Nn1g05851 Nelumbo nucifera HOM05D007434 ORTHO05D009541 2.2e-07 58.9 96 41.7
Ca_21180_v3 Cicer arietinum L. HOM05D010906 ORTHO05D011864 2.9e-07 58.5 67 46.3
Eucgr.I00950 Eucalyptus grandis HOM05D022674 ORTHO05D009966 2.9e-07 58.5 126 34.1
AL4G13410 Arabidopsis lyrata HOM05D010906 ORTHO05D011864 6.5e-07 57.4 86 44.2
BcaB02g09987 Brassica carinata HOM05D011091 ORTHO05D013198 6.5e-07 57.4 92 39.1
Potri.014G034500 Populus trichocarpa HOM05D068138 ORTHO05D012195 6.5e-07 57.4 91 37.4
Ciclev10027209m.g Citrus clementina HOM05D008581 ORTHO05D009966 8.5e-07 57.0 121 39.7
CsaV3_6G043170 Cucumis sativus L. HOM05D022436 ORTHO05D009966 1.4e-06 56.2 53 54.7
Sed0012386 Sechium edule HOM05D022436 ORTHO05D009966 1.4e-06 56.2 97 40.2
Oeu050767.1 Olea europaea HOM05D028002 ORTHO05D009966 1.9e-06 55.8 94 43.6
A04p17870 Brassica napus HOM05D010906 ORTHO05D011864 2.5e-06 55.5 85 40.0
BraA04t17407Z Brassica rapa HOM05D010906 ORTHO05D011864 2.5e-06 55.5 85 40.0
Gohir.A12G070300 Gossypium hirsutum HOM05D013202 ORTHO05D009966 2.5e-06 55.5 103 36.9
Hma1.2p1_1415F.1_g282020 Hydrangea macrophylla HOM05D008581 ORTHO05D009966 2.5e-06 55.5 125 38.4
QL06p042201 Quercus lobata HOM05D007434 ORTHO05D009541 2.5e-06 55.5 88 37.5
Sed0015269 Sechium edule HOM05D022436 ORTHO05D009966 2.5e-06 55.5 105 38.1
A09p56910 Brassica napus HOM05D010906 ORTHO05D011864 3.2e-06 55.1 85 42.4
BraA09t41083Z Brassica rapa HOM05D010906 ORTHO05D011864 3.2e-06 55.1 85 42.4
FvH4_1g15760 Fragaria vesca HOM05D018300 ORTHO05D020671 3.2e-06 55.1 99 38.4
FAN28G2751 Fragaria x ananassa HOM05D018300 ORTHO05D020671 3.2e-06 55.1 80 42.5
Peaxi162Scf00916g00007 Petunia axillaris HOM05D012691 ORTHO05D009966 3.2e-06 55.1 118 36.4
C08p39870 Brassica napus HOM05D010906 ORTHO05D011864 4.2e-06 54.7 85 42.4
BolC8t51559H Brassica oleracea HOM05D010906 ORTHO05D011864 4.2e-06 54.7 85 42.4
C04p52770 Brassica napus HOM05D010906 ORTHO05D011864 5.5e-06 54.3 86 43.0
FvH4_1g15740 Fragaria vesca HOM05D007434 ORTHO05D009541 5.5e-06 54.3 55 54.5
Manes.12G100000 Manihot esculenta HOM05D008581 ORTHO05D009966 7.2e-06 53.9 123 35.0
Aqoxy6G01382 Aquilegia oxysepala HOM05D007434 ORTHO05D009541 9.4e-06 53.5 95 41.1
BcaC07g40985 Brassica carinata HOM05D010906 ORTHO05D011864 9.4e-06 53.5 85 42.4
A02p44390 Brassica napus HOM05D011091 ORTHO05D013198 9.4e-06 53.5 102 35.3
C02p64780 Brassica napus HOM05D011091 ORTHO05D013198 9.4e-06 53.5 102 34.3
C07p24960 Brassica napus HOM05D011091 ORTHO05D013198 9.4e-06 53.5 99 37.4
Dinv39871 Davidia involucrata HOM05D008581 ORTHO05D009966 9.4e-06 53.5 120 40.0


User provided reference genes

Program Settings