Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G050800 Glycine max HOM05D005407 ORTHO05D006544 1.0e-169 600.1 335 100.0
Glyma.01G191400 Glycine max HOM05D005407 ORTHO05D006544 7.7e-117 424.5 338 78.7
Phvul.002G013600 Phaseolus vulgaris HOM05D005407 ORTHO05D006544 1.1e-91 340.9 350 65.1
VMungo1215G1030 Vigna mungo HOM05D005407 ORTHO05D006544 3.7e-87 325.9 318 66.0
Lj2g0008966 Lotus japonicus HOM05D005407 ORTHO05D006544 1.9e-62 243.8 353 48.7
arahy.Tifrunner.gnm1.ann1.IRX7P6 Arachis hypogaea HOM05D005407 ORTHO05D006544 1.5e-59 234.2 362 49.7
arahy.Tifrunner.gnm1.ann1.UV71K9 Arachis hypogaea HOM05D005407 ORTHO05D006544 2.5e-59 233.4 362 49.2
TPR.G23890 Trifolium pratense HOM05D005407 ORTHO05D006544 3.8e-55 219.5 354 52.3
Glyma.17G164300 Glycine max HOM05D005407 ORTHO05D006544 4.2e-54 216.1 346 51.4
Lj4g0004383 Lotus japonicus HOM05D005407 ORTHO05D006544 2.7e-53 213.4 362 53.3
VMungo1011G0001 Vigna mungo HOM05D005407 ORTHO05D006544 4.3e-51 206.1 344 50.3
Psat4g083080 Pisum sativum HOM05D005407 ORTHO05D006544 3.6e-50 203.0 335 50.7
Glyma.05G103000 Glycine max HOM05D005407 ORTHO05D006544 4.8e-50 202.6 346 50.3
CiPaw.02G004700 Carya illinoinensis HOM05D005407 ORTHO05D006544 1.4e-46 191.0 374 42.5
Duzib264G0474 Durio zibethinus HOM05D005407 ORTHO05D006544 2.8e-42 176.8 364 41.2
Haze_15320 Corylus avellana HOM05D005407 ORTHO05D006544 1.4e-41 174.5 356 41.0
Gohir.A12G074500 Gossypium hirsutum HOM05D005407 ORTHO05D006544 9.9e-40 168.3 366 41.3
QL06p039956 Quercus lobata HOM05D005407 ORTHO05D006544 9.9e-40 168.3 368 41.8
Gohir.A11G217700 Gossypium hirsutum HOM05D005407 ORTHO05D006544 3.8e-39 166.4 344 38.1
Duzib187G0216 Durio zibethinus HOM05D005407 ORTHO05D006544 4.2e-38 162.9 369 41.7
Gorai.008G080000 Gossypium raimondii HOM05D005407 ORTHO05D006544 4.2e-38 162.9 369 40.7
TAR628G1677 Trochodendron aralioides HOM05D005407 ORTHO05D006544 4.2e-38 162.9 321 40.8
Cfa004094 Carpinus fangiana HOM05D005407 ORTHO05D006544 5.5e-38 162.5 362 40.6
Dinv26896 Davidia involucrata HOM05D005407 ORTHO05D006544 1.6e-37 161.0 353 38.0
Gorai.007G220900 Gossypium raimondii HOM05D005407 ORTHO05D006544 6.0e-37 159.1 345 38.3
Thecc.01G067900 Theobroma cacao HOM05D005407 ORTHO05D006544 6.0e-37 159.1 385 39.0
Gohir.D11G205800 Gossypium hirsutum HOM05D005407 ORTHO05D006544 7.9e-37 158.7 345 39.1
Gohir.D12G072700 Gossypium hirsutum HOM05D005407 ORTHO05D006544 1.8e-36 157.5 356 40.4
Manes.13G114000 Manihot esculenta HOM05D005407 ORTHO05D006544 1.5e-35 154.5 372 42.7
Duzib147G1232 Durio zibethinus HOM05D005407 ORTHO05D006544 1.9e-35 154.1 389 35.5
GSVIVG01000158001 Vitis vinifera HOM05D005407 ORTHO05D006544 2.5e-35 153.7 325 37.8
Cpa.g.sc6.55 Carica papaya HOM05D005407 ORTHO05D006544 2.8e-34 150.2 341 41.1
CiPaw.01G007800 Carya illinoinensis HOM05D005407 ORTHO05D006544 2.8e-34 150.2 350 35.1
Potri.007G051800 Populus trichocarpa HOM05D005407 ORTHO05D006544 4.8e-34 149.4 391 39.6
Phvul.003G237500 Phaseolus vulgaris HOM05D005407 ORTHO05D006544 1.8e-33 147.5 328 44.8
Nn5g30501 Nelumbo nucifera HOM05D005407 ORTHO05D006544 6.9e-33 145.6 344 37.8
Potri.005G145100 Populus trichocarpa HOM05D005407 ORTHO05D006544 2.0e-32 144.1 391 35.0
Ciclev10025829m.g Citrus clementina HOM05D005407 ORTHO05D006544 2.6e-32 143.7 402 32.3
Sabra07G0045500 Salix brachista HOM05D005407 ORTHO05D006544 1.0e-31 141.7 385 38.2
Medtr4g095320 Medicago truncatula HOM05D005407 ORTHO05D006544 4.9e-31 139.4 363 40.8
Gohir.A02G153500 Gossypium hirsutum HOM05D005407 ORTHO05D006544 1.1e-30 138.3 343 34.4
Gorai.003G028600 Gossypium raimondii HOM05D005407 ORTHO05D006544 4.2e-30 136.3 343 37.3
Gohir.D03G026900 Gossypium hirsutum HOM05D005407 ORTHO05D006544 9.3e-30 135.2 343 37.0
Lalb_Chr16g0389101 Lupinus albus HOM05D005407 ORTHO05D006544 1.6e-29 134.4 302 39.4
Nitab4.5_0003878g0070 Nicotiana tabacum HOM05D005407 ORTHO05D006544 1.3e-28 131.3 319 37.6
Actinidia21238 Actinidia chinensis HOM05D005407 ORTHO05D006544 2.3e-28 130.6 339 35.7
Oeu040602.1 Olea europaea HOM05D005407 ORTHO05D006544 8.7e-28 128.6 327 37.6
Nitab4.5_0007941g0010 Nicotiana tabacum HOM05D005407 ORTHO05D006544 1.5e-27 127.9 341 38.4
Eucgr.I00726 Eucalyptus grandis HOM05D005407 ORTHO05D006544 9.0e-25 118.6 342 36.0
CAN.G1075.9 Capsicum annuum HOM05D005407 ORTHO05D006544 1.5e-24 117.9 307 34.9
Nn1g04631 Nelumbo nucifera HOM05D005407 ORTHO05D006544 3.4e-24 116.7 314 34.1
MELO3C007607.2 Cucumis melo HOM05D005407 ORTHO05D006544 4.5e-24 116.3 343 37.9
Sabra05G0114800 Salix brachista HOM05D005407 ORTHO05D006544 4.5e-24 116.3 287 38.0
Sabra05G0115900 Salix brachista HOM05D005407 ORTHO05D006544 4.5e-24 116.3 287 38.0
Sed0008783 Sechium edule HOM05D005407 ORTHO05D006544 5.9e-24 115.9 324 36.7
CsaV3_6G043820 Cucumis sativus L. HOM05D005407 ORTHO05D006544 1.0e-23 115.2 340 31.2
ClCG01G017290 Citrullus lanatus HOM05D005407 ORTHO05D006544 1.3e-23 114.8 340 36.8
MD02G1181700 Malus domestica HOM05D005407 ORTHO05D006544 1.3e-23 114.8 360 34.2
CANSAT01G3084 Cannabis sativa HOM05D005407 ORTHO05D006544 3.2e-22 110.2 356 32.3
MD15G1292600 Malus domestica HOM05D005407 ORTHO05D006544 3.2e-22 110.2 362 33.1
Sopen02g037270 Solanum pennellii HOM05D005407 ORTHO05D006544 3.2e-22 110.2 326 34.0
Solyc02g092720.1 Solanum lycopersicum HOM05D005407 ORTHO05D006544 4.2e-22 109.8 329 33.7
TWI53G1118 Tripterygium wilfordii HOM05D005407 ORTHO05D006544 7.9e-21 105.5 339 34.2
PGR004G2820 Punica granatum HOM05D005407 ORTHO05D006544 1.8e-20 104.4 339 33.3
MSTRG.2839 Avicennia marina HOM05D005407 ORTHO05D006544 2.3e-20 104.0 321 32.4
PGSC0003DMG400024943 Solanum tuberosum HOM05D005407 ORTHO05D006544 6.7e-20 102.4 304 34.9
Gohir.D10G097800 Gossypium hirsutum HOM05D005407 ORTHO05D006544 2.5e-19 100.5 292 31.5
Gorai.011G107400 Gossypium raimondii HOM05D005407 ORTHO05D006544 4.3e-19 99.8 292 31.2
Prupe.6G224800 Prunus persica HOM05D005407 ORTHO05D006544 5.7e-19 99.4 355 34.1
TWI09G0600 Tripterygium wilfordii HOM05D005407 ORTHO05D006544 6.3e-18 95.9 306 33.7
Actinidia32821 Actinidia chinensis HOM05D005407 ORTHO05D006544 1.8e-17 94.4 321 32.7
Gohir.A10G090300 Gossypium hirsutum HOM05D005407 ORTHO05D006544 1.8e-17 94.4 292 31.2
Lsat_1_v5_gn_4_162000 Lactuca sativa HOM05D005407 ORTHO05D006544 3.1e-17 93.6 310 30.0
Manes.12G112400 Manihot esculenta HOM05D005407 ORTHO05D006544 5.3e-17 92.8 339 31.9
PSO675G4008 Papaver somniferum HOM05D005407 ORTHO05D006544 1.2e-16 91.7 349 32.7
Aqoxy6G02765 Aquilegia oxysepala HOM05D005407 ORTHO05D006544 1.5e-16 91.3 191 37.2
HanXRQChr12g0373231 Helianthus annuus HOM05D005407 ORTHO05D006544 1.5e-16 91.3 316 30.4
PSO541G0358 Papaver somniferum HOM05D005407 ORTHO05D006544 2.0e-16 90.9 344 31.7
EL10Ac6g15663 Beta vulgaris HOM05D005407 ORTHO05D006544 3.4e-16 90.1 374 31.3
Cc07_g06740 Coffea canephora HOM05D005407 ORTHO05D006544 5.9e-16 89.4 322 35.1
unitig_52.g17607 Utricularia gibba HOM05D005407 ORTHO05D006544 5.9e-16 89.4 315 30.2
Dinv30062 Davidia involucrata HOM05D005407 ORTHO05D006544 7.7e-16 89.0 276 35.9
FAN19G1545 Fragaria x ananassa HOM05D005407 ORTHO05D006544 1.0e-15 88.6 366 36.9
FvH4_1g17130 Fragaria vesca HOM05D005407 ORTHO05D006544 2.2e-15 87.4 366 37.4
MSTRG.23698 Avicennia marina HOM05D005407 ORTHO05D006544 2.9e-15 87.0 327 31.8
FAN26G3453 Fragaria x ananassa HOM05D005407 ORTHO05D006544 2.9e-15 87.0 366 36.9
Peaxi162Scf00365g00076 Petunia axillaris HOM05D005407 ORTHO05D006544 2.9e-15 87.0 306 29.7
FAN23G2725 Fragaria x ananassa HOM05D005407 ORTHO05D006544 5.0e-15 86.3 360 30.6
Sed0011473 Sechium edule HOM05D005407 ORTHO05D006544 6.5e-15 85.9 325 32.3
SalBow1G5175 Salvia bowleyana HOM05D005407 ORTHO05D006544 1.9e-14 84.3 318 34.0
Peaxi162Scf00264g00321 Petunia axillaris HOM05D005407 ORTHO05D006544 2.5e-14 84.0 323 33.4
Atru.chr3.207 Acer truncatum HOM05D005407 ORTHO05D006544 4.7e-13 79.7 276 34.8
MSTRG.3457 Avicennia marina HOM05D005407 ORTHO05D006544 1.0e-12 78.6 323 33.1
TAR376G1145 Trochodendron aralioides HOM05D005407 ORTHO05D006544 1.0e-12 78.6 205 42.0
Sp2g29310 Schrenkiella parvula HOM05D005407 ORTHO05D006544 3.9e-12 76.6 306 28.4
unitig_62.g23420 Utricularia gibba HOM05D005407 ORTHO05D006544 3.9e-12 76.6 310 27.4
Lsat_1_v5_gn_3_87740 Lactuca sativa HOM05D005407 ORTHO05D006544 5.1e-12 76.3 294 27.6
RcHm_v2.0_Chr2g0107301 Rosa chinensis HOM05D005407 ORTHO05D006544 2.0e-11 74.3 361 28.0
BcaC04g19788 Brassica carinata HOM05D005407 ORTHO05D006544 2.6e-11 73.9 330 28.5
C09p51650 Brassica napus HOM05D005407 ORTHO05D006544 2.6e-11 73.9 330 28.5
BolC9t58026H Brassica oleracea HOM05D005407 ORTHO05D006544 2.6e-11 73.9 330 28.5
FAN28G2899 Fragaria x ananassa HOM05D005407 ORTHO05D006544 2.6e-11 73.9 361 28.8
SGA_v2.0_scaffold143G35780 Striga asiatica HOM05D005407 ORTHO05D006544 2.6e-11 73.9 304 31.9
THA.LOC104827519 Tarenaya hassleriana HOM05D005407 ORTHO05D006544 4.4e-11 73.2 371 28.8
SGA_v2.0_scaffold15G07407 Striga asiatica HOM05D005407 ORTHO05D006544 1.3e-10 71.6 338 25.4
MELO3C020864.2 Cucumis melo HOM05D005407 ORTHO05D006544 2.8e-10 70.5 324 31.2
DCAR_021471 Daucus carota HOM05D005407 ORTHO05D006544 3.7e-10 70.1 353 25.2
Oeu054177.1 Olea europaea HOM05D005407 ORTHO05D006544 3.7e-10 70.1 179 33.5
Carub.0008s2714 Capsella rubella HOM05D005407 ORTHO05D006544 1.1e-09 68.6 187 29.9
CsaV3_2G016540 Cucumis sativus L. HOM05D005407 ORTHO05D006544 1.1e-09 68.6 324 30.6
Thhalv10005384m.g Eutrema salsugineum HOM05D005407 ORTHO05D006544 1.1e-09 68.6 338 29.0
vmacro17985 Vaccinium macrocarpon HOM05D005407 ORTHO05D006544 1.1e-09 68.6 86 52.3
CDE04G2817 Ceratophyllum demersum HOM05D005407 ORTHO05D006544 1.4e-09 68.2 199 30.2
A09p09420 Brassica napus HOM05D005407 ORTHO05D006544 1.8e-09 67.8 326 28.2
BcaC04g23209 Brassica carinata HOM05D005407 ORTHO05D006544 4.1e-09 66.6 327 27.8
A07p16540 Brassica napus HOM05D005407 ORTHO05D006544 4.1e-09 66.6 175 31.4
BolC9t53999H Brassica oleracea HOM05D005407 ORTHO05D006544 4.1e-09 66.6 330 26.7
BraA07t29378Z Brassica rapa HOM05D005407 ORTHO05D006544 4.1e-09 66.6 175 31.4
C09p11100 Brassica napus HOM05D005407 ORTHO05D006544 1.2e-08 65.1 330 26.7
Solyc03g150114.1 Solanum lycopersicum HOM05D005407 ORTHO05D006544 2.0e-08 64.3 216 30.1
BcaB04g20064 Brassica carinata HOM05D005407 ORTHO05D006544 2.6e-08 63.9 332 26.5
CSS0012811 Camellia sinensis var. sinensis HOM05D005407 ORTHO05D006544 2.6e-08 63.9 362 27.1
BraA09t36591Z Brassica rapa HOM05D005407 ORTHO05D006544 4.5e-08 63.2 329 27.4
CARHR280260 Cardamine hirsuta HOM05D005407 ORTHO05D006544 4.5e-08 63.2 332 28.3
ClCG02G012410 Citrullus lanatus HOM05D005407 ORTHO05D006544 7.7e-08 62.4 328 30.5
unitig_899.g14576 Utricularia gibba HOM05D005407 ORTHO05D006544 1.0e-07 62.0 199 38.2
BolC7t42952H Brassica oleracea HOM05D005407 ORTHO05D006544 1.7e-07 61.2 333 27.6
HPP92_007853 Vanilla planifolia HOM05D005407 ORTHO05D006544 1.7e-07 61.2 311 26.7
CDE07G1425 Ceratophyllum demersum HOM05D006600 ORTHO05D008446 2.9e-07 60.5 309 29.4
Aa31LG1G15900 Aethionema arabicum HOM05D005407 ORTHO05D006544 3.8e-07 60.1 269 26.4
AL8G43980 Arabidopsis lyrata HOM05D005407 ORTHO05D006544 5.0e-07 59.7 302 25.8
AT5G67350 Arabidopsis thaliana HOM05D005407 ORTHO05D006544 8.5e-07 58.9 305 25.9
Migut.H00374 Erythranthe guttata HOM05D005407 ORTHO05D006544 5.5e-06 56.2 335 32.8
Rhsim08G0096100 Rhododendron simsii HOM05D005407 ORTHO05D006544 7.2e-06 55.8 272 27.6


User provided reference genes

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