Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G049700 Glycine max HOM05D004032 ORTHO05D004462 1.3e-117 426.4 216 100.0
Glyma.01G192400 Glycine max HOM05D004032 ORTHO05D004462 3.0e-98 362.1 216 86.1
Phvul.003G236700 Phaseolus vulgaris HOM05D004032 ORTHO05D004462 3.4e-73 278.9 217 70.5
VMungo0251G2494 Vigna mungo HOM05D004032 ORTHO05D004462 7.5e-73 277.7 217 70.5
Glyma.17G163400 Glycine max HOM05D004032 ORTHO05D004462 8.6e-69 264.2 218 68.8
Lalb_Chr05g0213571 Lupinus albus HOM05D004032 ORTHO05D004462 6.2e-67 258.1 216 63.9
Glyma.05G103900 Glycine max HOM05D004032 ORTHO05D004462 3.1e-66 255.8 217 65.9
VMungo1215G3265 Vigna mungo HOM05D004032 ORTHO05D004462 6.8e-66 254.6 164 83.5
Glyma.15G185500 Glycine max HOM05D004032 ORTHO05D004462 8.9e-66 254.2 214 67.3
Phvul.002G012400 Phaseolus vulgaris HOM05D004032 ORTHO05D004462 1.2e-65 253.8 164 82.3
Lj2g0017817 Lotus japonicus HOM05D004032 ORTHO05D004462 2.0e-62 243.0 210 66.2
Medtr4g095440 Medicago truncatula HOM05D004032 ORTHO05D004462 2.5e-60 236.1 221 62.9
Lj4g0009335 Lotus japonicus HOM05D004032 ORTHO05D004462 9.5e-60 234.2 220 65.9
TPR.G23878 Trifolium pratense HOM05D004032 ORTHO05D004462 6.2e-59 231.5 218 60.6
Haze_15306 Corylus avellana HOM05D004032 ORTHO05D004462 1.8e-58 229.9 218 60.6
QL06p039858 Quercus lobata HOM05D004032 ORTHO05D004462 4.0e-58 228.8 216 60.6
Psat4g083520 Pisum sativum HOM05D004032 ORTHO05D004462 1.1e-52 210.7 221 56.6
Lalb_Chr16g0389141 Lupinus albus HOM05D004032 ORTHO05D004462 2.5e-52 209.5 217 58.1
Lalb_Chr09g0334051 Lupinus albus HOM05D004032 ORTHO05D004462 9.9e-49 197.6 205 54.6
GSVIVG01000145001 Vitis vinifera HOM05D004032 ORTHO05D004462 4.9e-48 195.3 217 53.9
Potri.007G053300 Populus trichocarpa HOM05D004032 ORTHO05D004462 6.4e-48 194.9 214 52.3
Dinv30069 Davidia involucrata HOM05D004032 ORTHO05D004462 3.2e-47 192.6 217 53.0
CiPaw.02G004200 Carya illinoinensis HOM05D004032 ORTHO05D004462 1.2e-46 190.7 223 53.4
Potri.005G145800 Populus trichocarpa HOM05D004032 ORTHO05D004462 6.0e-46 188.3 214 51.4
CiPaw.01G006700 Carya illinoinensis HOM05D004032 ORTHO05D004462 5.1e-45 185.3 223 52.5
Thecc.01G069300 Theobroma cacao HOM05D004032 ORTHO05D004462 9.6e-44 181.0 220 51.8
Manes.13G113400 Manihot esculenta HOM05D004032 ORTHO05D004462 2.1e-43 179.9 223 52.9
Manes.12G111200 Manihot esculenta HOM05D004032 ORTHO05D004462 6.2e-43 178.3 223 51.6
Prupe.6G223500 Prunus persica HOM05D004032 ORTHO05D004462 1.8e-42 176.8 236 52.1
TAR376G0432 Trochodendron aralioides HOM05D004032 ORTHO05D004462 1.8e-42 176.8 217 52.5
Duzib147G1493 Durio zibethinus HOM05D004032 ORTHO05D004462 2.4e-42 176.4 222 50.5
Duzib187G1312 Durio zibethinus HOM05D004032 ORTHO05D004462 3.4e-41 172.6 221 49.3
Sabra05G0116500 Salix brachista HOM05D004032 ORTHO05D004462 7.1e-39 164.9 214 48.6
CSS0002661 Camellia sinensis var. sinensis HOM05D004032 ORTHO05D004462 2.7e-38 162.9 224 47.8
CSS0031607 Camellia sinensis var. sinensis HOM05D004032 ORTHO05D004462 1.0e-37 161.0 224 47.3
Dinv26906 Davidia involucrata HOM05D004032 ORTHO05D004462 3.0e-37 159.5 220 47.7
DCAR_025783 Daucus carota HOM05D004032 ORTHO05D004462 6.6e-37 158.3 222 45.9
Gorai.007G221700 Gossypium raimondii HOM05D004032 ORTHO05D004462 2.5e-36 156.4 229 46.7
Ciclev10026503m.g Citrus clementina HOM05D004032 ORTHO05D004462 3.3e-36 156.0 221 45.2
arahy.Tifrunner.gnm1.ann1.L7L2H1 Arachis hypogaea HOM05D004032 ORTHO05D004462 5.6e-36 155.2 223 48.9
arahy.Tifrunner.gnm1.ann1.7C4JLW Arachis hypogaea HOM05D004032 ORTHO05D004462 7.3e-36 154.8 223 49.8
Gohir.D11G206500 Gossypium hirsutum HOM05D004032 ORTHO05D004462 7.3e-36 154.8 229 47.6
Aqoxy6G02719 Aquilegia oxysepala HOM05D004032 ORTHO05D004462 1.3e-35 154.1 218 43.6
Hma1.2p1_0942F.1_g239820 Hydrangea macrophylla HOM05D004032 ORTHO05D004462 2.1e-35 153.3 219 46.6
Gohir.A11G216800 Gossypium hirsutum HOM05D004032 ORTHO05D004462 2.8e-35 152.9 226 46.0
Cpa.g.sc6.44 Carica papaya HOM05D004032 ORTHO05D004462 4.8e-35 152.1 225 47.1
TWI09G0556 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 1.4e-34 150.6 220 47.3
FAN28G1831 Fragaria x ananassa HOM05D004032 ORTHO05D004462 5.3e-34 148.7 220 45.9
RcHm_v2.0_Chr2g0107481 Rosa chinensis HOM05D004032 ORTHO05D004462 5.3e-34 148.7 220 45.9
Oeu013283.1 Olea europaea HOM05D004032 ORTHO05D004462 1.5e-33 147.1 218 44.5
Cc07_g06860 Coffea canephora HOM05D004032 ORTHO05D004462 2.6e-33 146.4 223 44.8
CSS0022714 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D004462 5.8e-33 145.2 186 48.4
DCAR_010831 Daucus carota HOM05D004032 ORTHO05D004462 1.7e-32 143.7 219 45.2
TAR628G1371 Trochodendron aralioides HOM05D004032 ORTHO05D004462 1.4e-31 140.6 210 45.2
CSS0026387 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D004462 1.9e-31 140.2 189 47.1
FvH4_1g17290 Fragaria vesca HOM05D004032 ORTHO05D004462 2.1e-30 136.7 220 44.5
FAN19G2997 Fragaria x ananassa HOM05D004032 ORTHO05D004462 2.1e-30 136.7 220 44.5
Nn1g04611 Nelumbo nucifera HOM05D004032 ORTHO05D004462 2.1e-30 136.7 197 44.2
Eucgr.I00716 Eucalyptus grandis HOM05D004032 ORTHO05D004462 4.6e-30 135.6 230 42.6
COL.COLO4_11544 Corchorus olitorius HOM05D004032 ORTHO05D004462 7.9e-30 134.8 220 42.7
Gohir.A02G153200 Gossypium hirsutum HOM05D004032 ORTHO05D004462 2.3e-29 133.3 221 43.0
Gohir.D03G027200 Gossypium hirsutum HOM05D004032 ORTHO05D004462 5.1e-29 132.1 221 43.4
CsaV3_6G043920 Cucumis sativus L. HOM05D004032 ORTHO05D004462 6.7e-29 131.7 220 40.9
TWI53G0135 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 1.9e-28 130.2 218 43.6
Gorai.003G028900 Gossypium raimondii HOM05D004032 ORTHO05D004462 3.3e-28 129.4 221 43.0
Oeu054187.1 Olea europaea HOM05D004032 ORTHO05D004462 4.3e-28 129.0 219 42.0
vmacro05391 Vaccinium macrocarpon HOM05D004032 ORTHO05D004462 5.6e-28 128.6 221 43.9
arahy.Tifrunner.gnm1.ann1.4VG7J5 Arachis hypogaea HOM05D004032 ORTHO05D004462 9.6e-28 127.9 254 40.6
MD15G1293900 Malus domestica HOM05D004032 ORTHO05D004462 1.3e-27 127.5 252 42.9
Nitab4.5_0000868g0010 Nicotiana tabacum HOM05D004032 ORTHO05D004462 2.1e-27 126.7 219 42.5
Rhsim10G0102400 Rhododendron simsii HOM05D004032 ORTHO05D004462 2.1e-27 126.7 222 42.3
Nn5g30527 Nelumbo nucifera HOM05D004032 ORTHO05D004462 6.2e-27 125.2 130 53.1
PGR004G0357 Punica granatum HOM05D004032 ORTHO05D004462 1.1e-26 124.4 222 41.4
MD02G1182600 Malus domestica HOM05D004032 ORTHO05D004462 1.5e-25 120.6 244 41.8
CAN.G1075.18 Capsicum annuum HOM05D004032 ORTHO05D004462 2.0e-25 120.2 226 40.7
TWI73G0275 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 9.9e-25 117.9 215 41.9
Gohir.A10G090100 Gossypium hirsutum HOM05D004032 ORTHO05D004462 1.7e-24 117.1 213 39.4
ClCG01G017390 Citrullus lanatus HOM05D004032 ORTHO05D004462 2.2e-24 116.7 223 39.5
Actinidia16438 Actinidia chinensis HOM05D004032 ORTHO05D004462 2.9e-24 116.3 219 41.1
FAN26G2221 Fragaria x ananassa HOM05D004032 ORTHO05D004462 6.4e-24 115.2 219 40.2
Actinidia36441 Actinidia chinensis HOM05D004032 ORTHO05D004462 8.4e-24 114.8 217 38.2
Oeu031172.1 Olea europaea HOM05D004032 ORTHO05D004462 8.4e-24 114.8 221 39.8
Oeu031171.1 Olea europaea HOM05D004032 ORTHO05D004462 1.4e-23 114.0 221 39.4
Actinidia21232 Actinidia chinensis HOM05D004032 ORTHO05D004462 4.2e-23 112.5 143 50.3
Peaxi162Scf00264g00213 Petunia axillaris HOM05D004032 ORTHO05D004462 4.2e-23 112.5 233 40.8
FAN23G1545 Fragaria x ananassa HOM05D004032 ORTHO05D004462 9.3e-23 111.3 219 39.3
Gohir.D10G098000 Gossypium hirsutum HOM05D004032 ORTHO05D004462 9.3e-23 111.3 213 38.0
Oeu040591.1 Olea europaea HOM05D004032 ORTHO05D004462 9.3e-23 111.3 218 39.9
Oeu040592.1 Olea europaea HOM05D004032 ORTHO05D004462 9.3e-23 111.3 218 39.9
HanXRQChr12g0373191 Helianthus annuus HOM05D004032 ORTHO05D004462 3.5e-22 109.4 224 39.7
Lsat_1_v5_gn_4_162340 Lactuca sativa HOM05D004032 ORTHO05D004462 3.5e-22 109.4 223 40.8
Gorai.011G107600 Gossypium raimondii HOM05D004032 ORTHO05D004462 7.9e-22 108.2 213 37.6
PGSC0003DMG400024938 Solanum tuberosum HOM05D004032 ORTHO05D004462 7.9e-22 108.2 224 39.7
vmacro17992 Vaccinium macrocarpon HOM05D004032 ORTHO05D004462 1.0e-21 107.8 216 38.0
Solyc02g092590.3 Solanum lycopersicum HOM05D004032 ORTHO05D004462 2.3e-21 106.7 226 36.3
Actinidia11994 Actinidia chinensis HOM05D004032 ORTHO05D004462 5.1e-21 105.5 129 52.7
MSTRG.23688 Avicennia marina HOM05D004032 ORTHO05D004462 5.1e-21 105.5 224 36.6
PSO541G5875 Papaver somniferum HOM05D004032 ORTHO05D004462 5.1e-21 105.5 226 35.0
Sopen02g037160 Solanum pennellii HOM05D004032 ORTHO05D004462 8.7e-21 104.8 223 37.7
HanXRQChr11g0322451 Helianthus annuus HOM05D004032 ORTHO05D004462 1.1e-20 104.4 219 36.5
PSO675G6353 Papaver somniferum HOM05D004032 ORTHO05D004462 2.5e-20 103.2 220 33.6
Hma1.2p1_0017F.1_g012150 Hydrangea macrophylla HOM05D004032 ORTHO05D004462 3.3e-20 102.8 221 38.5
MSTRG.2833 Avicennia marina HOM05D004032 ORTHO05D004462 7.4e-20 101.7 224 40.6
Rhsim08G0095200 Rhododendron simsii HOM05D004032 ORTHO05D004462 7.4e-20 101.7 215 35.8
Hund13934 Selenicereus undatus HOM05D004032 ORTHO05D004462 7.4e-20 101.7 226 35.4
Sed0022630 Sechium edule HOM05D004032 ORTHO05D004462 6.2e-19 98.6 143 48.3
HPP92_023691 Vanilla planifolia HOM05D004032 ORTHO05D004462 6.2e-19 98.6 213 35.2
HPP92_023674 Vanilla planifolia HOM05D004032 ORTHO05D004462 4.0e-18 95.9 216 32.9
arahy.Tifrunner.gnm1.ann1.NPYP4Z Arachis hypogaea HOM05D004032 ORTHO05D004462 5.3e-18 95.5 151 43.0
ECA238G1032 Erigeron canadensis HOM05D004032 ORTHO05D004462 6.9e-18 95.1 163 44.2
ECA232G3054 Erigeron canadensis HOM05D004032 ORTHO05D004462 1.2e-17 94.4 148 43.9
Lj7A88G34 Lonicera japonica HOM05D004032 ORTHO05D004462 2.0e-17 93.6 171 39.8
Migut.H00365 Erythranthe guttata HOM05D004032 ORTHO05D004462 5.8e-17 92.0 230 34.8
Aa31LG1G15950 Aethionema arabicum HOM05D004032 ORTHO05D004462 7.6e-17 91.7 129 44.2
CARHR280210 Cardamine hirsuta HOM05D004032 ORTHO05D004462 1.0e-16 91.3 122 46.7
BcaB02g09927 Brassica carinata HOM05D004032 ORTHO05D004462 2.2e-16 90.1 119 45.4
A07p16510 Brassica napus HOM05D004032 ORTHO05D004462 2.2e-16 90.1 218 33.0
BraA07t29375Z Brassica rapa HOM05D004032 ORTHO05D004462 2.2e-16 90.1 218 33.0
Sp2g29270 Schrenkiella parvula HOM05D004032 ORTHO05D004462 2.2e-16 90.1 120 43.3
SGA_v2.0_scaffold15G07422 Striga asiatica HOM05D004032 ORTHO05D004462 4.9e-16 89.0 221 33.0
C07p24210 Brassica napus HOM05D004032 ORTHO05D004462 8.4e-16 88.2 119 43.7
BolC7t42948H Brassica oleracea HOM05D004032 ORTHO05D004462 8.4e-16 88.2 119 43.7
Hund16386 Selenicereus undatus HOM05D004032 ORTHO05D004462 8.4e-16 88.2 221 32.6
HanXRQChr14g0441881 Helianthus annuus HOM05D004032 ORTHO05D004462 1.1e-15 87.8 152 42.1
Lj4A160G62 Lonicera japonica HOM05D004032 ORTHO05D004462 1.1e-15 87.8 145 43.4
Thhalv10005011m.g Eutrema salsugineum HOM05D004032 ORTHO05D004462 1.4e-15 87.4 120 45.0
THA.LOC104827558 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 1.4e-15 87.4 119 45.4
BcaC03g18375 Brassica carinata HOM05D004032 ORTHO05D004462 2.5e-15 86.7 157 40.1
A02p44240 Brassica napus HOM05D004032 ORTHO05D004462 2.5e-15 86.7 156 39.7
C02p64510 Brassica napus HOM05D004032 ORTHO05D004462 2.5e-15 86.7 157 40.1
BolC2t12515H Brassica oleracea HOM05D004032 ORTHO05D004462 2.5e-15 86.7 157 40.1
BraA02t09348Z Brassica rapa HOM05D004032 ORTHO05D004462 2.5e-15 86.7 156 39.7
THA.LOC104819252 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 2.5e-15 86.7 146 41.1
BcaC06g34822 Brassica carinata HOM05D004032 ORTHO05D004462 5.5e-15 85.5 119 42.9
Ah.02g125580 Amaranthus hybridus HOM05D004032 ORTHO05D004462 7.1e-15 85.1 224 33.9
Lsat_1_v5_gn_2_83781 Lactuca sativa HOM05D004032 ORTHO05D004462 9.3e-15 84.7 213 35.2
AT5G67390 Arabidopsis thaliana HOM05D004032 ORTHO05D004462 1.2e-14 84.3 121 45.5
Atru.chr3.163 Acer truncatum HOM05D004032 ORTHO05D004462 1.6e-14 84.0 228 33.8
AL8G43930 Arabidopsis lyrata HOM05D004032 ORTHO05D004462 1.6e-14 84.0 121 44.6
A09p09370 Brassica napus HOM05D004032 ORTHO05D004462 1.6e-14 84.0 157 38.9
C09p10940 Brassica napus HOM05D004032 ORTHO05D004462 2.1e-14 83.6 157 38.2
Atru.chr3.192 Acer truncatum HOM05D004032 ORTHO05D004462 2.7e-14 83.2 225 33.8
Carub.0008s2709 Capsella rubella HOM05D004032 ORTHO05D004462 2.7e-14 83.2 119 42.9
BcaC04g23221 Brassica carinata HOM05D004032 ORTHO05D004462 3.5e-14 82.8 157 37.6
BolC9t53989H Brassica oleracea HOM05D004032 ORTHO05D004462 3.5e-14 82.8 157 37.6
BraA09t36588Z Brassica rapa HOM05D004032 ORTHO05D004462 4.6e-14 82.4 157 38.2
THA.LOC104821233 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 1.0e-13 81.3 125 44.8
Sed0016234 Sechium edule HOM05D004032 ORTHO05D004462 1.8e-13 80.5 208 32.7
BcaB04g20056 Brassica carinata HOM05D004032 ORTHO05D004462 2.3e-13 80.1 156 38.5
CANSAT01G2482 Cannabis sativa HOM05D004032 ORTHO05D004462 1.5e-12 77.4 249 32.1
Sed0024584 Sechium edule HOM05D004032 ORTHO05D004462 1.5e-12 77.4 207 30.4
MELO3C007617.2 Cucumis melo HOM05D004032 ORTHO05D004462 4.3e-12 75.9 206 34.0
SalBow6G2131 Salvia bowleyana HOM05D004032 ORTHO05D004462 4.3e-12 75.9 217 30.4
ATR0030G044 Amborella trichopoda HOM05D004032 ORTHO05D004462 9.6e-12 74.7 233 32.2
Sc16g0000080 Simmondsia chinensis HOM05D004032 ORTHO05D004462 9.6e-12 74.7 237 29.5
Nitab4.5_0006689g0040 Nicotiana tabacum HOM05D004032 ORTHO05D004462 3.7e-11 72.8 74 52.7
Os03g0442900 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 2.4e-10 70.1 221 29.9
SGA_v2.0_scaffold72G24091 Striga asiatica HOM05D004032 ORTHO05D004462 2.4e-10 70.1 135 37.0
Os03g0604566 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 5.3e-10 68.9 45 68.9
CDE02G2979 Ceratophyllum demersum HOM05D000039 ORTHO05D000870 6.9e-10 68.6 223 30.9
Zm00001eb058240 Zea mays HOM05D004032 ORTHO05D004462 1.0e-08 64.7 71 45.1
Os12g0580600 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 2.2e-08 63.5 155 32.3
Nitab4.5_0000651g0050 Nicotiana tabacum HOM05D004032 ORTHO05D004462 2.9e-08 63.2 129 41.9
HPP92_007856 Vanilla planifolia HOM05D004032 ORTHO05D004462 3.8e-08 62.8 149 34.9
Zm00001eb214280 Zea mays HOM05D004032 ORTHO05D004462 3.8e-08 62.8 45 60.0
Lsat_1_v5_gn_5_85601 Lactuca sativa HOM05D007665 ORTHO05D008293 1.1e-07 61.2 154 33.1
Thecc.09G178300 Theobroma cacao HOM05D007665 ORTHO05D008293 1.1e-07 61.2 241 28.6
TAR625G0485 Trochodendron aralioides HOM05D007665 ORTHO05D008293 1.4e-07 60.8 270 24.8
EL10Ac6g15646 Beta vulgaris HOM05D004032 ORTHO05D004462 4.2e-07 59.3 247 27.5
Os03g0762100 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 7.2e-07 58.5 46 54.3
Potri.018G090000 Populus trichocarpa HOM05D007665 ORTHO05D008293 2.7e-06 56.6 254 28.7
ClCG02G012390 Citrullus lanatus HOM05D004032 ORTHO05D004462 3.6e-06 56.2 209 27.8
Gohir.D08G093300 Gossypium hirsutum HOM05D007665 ORTHO05D008293 3.6e-06 56.2 258 26.0
CsaV3_2G016520 Cucumis sativus L. HOM05D004032 ORTHO05D004462 4.6e-06 55.8 40 62.5
Zm00001eb134870 Zea mays HOM05D004032 ORTHO05D004462 4.6e-06 55.8 110 38.2
MELO3C020862.2 Cucumis melo HOM05D004032 ORTHO05D004462 6.1e-06 55.5 114 35.1
Dinv19563 Davidia involucrata HOM05D007665 ORTHO05D008293 6.1e-06 55.5 250 30.4


User provided reference genes

Program Settings