Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G046600 Glycine max HOM05D007502 ORTHO05D010230 1.6e-80 302.8 157 100.0
VMungo1215G1334 Vigna mungo HOM05D007502 ORTHO05D010230 3.6e-40 168.7 187 58.3
Phvul.002G009800 Phaseolus vulgaris HOM05D007502 ORTHO05D010230 3.9e-39 165.2 155 69.0
Glyma.01G195100 Glycine max HOM05D007502 ORTHO05D010230 1.3e-37 160.2 108 83.3
Lalb_Chr05g0213781 Lupinus albus HOM05D007502 ORTHO05D010230 5.3e-36 154.8 156 64.1
Medtr5g015230 Medicago truncatula HOM05D007502 ORTHO05D010230 9.1e-36 154.1 157 63.1
arahy.Tifrunner.gnm1.ann1.69I0H7 Arachis hypogaea HOM05D007502 ORTHO05D010230 7.2e-33 144.4 169 56.2
Lj2g0008607 Lotus japonicus HOM05D007502 ORTHO05D010230 1.2e-32 143.7 175 55.4
arahy.Tifrunner.gnm1.ann1.W7GVX2 Arachis hypogaea HOM05D007502 ORTHO05D010230 1.8e-31 139.8 172 54.7
Ca_24677_v3 Cicer arietinum L. HOM05D007502 ORTHO05D010230 8.8e-23 110.9 129 55.8
QL06p039372 Quercus lobata HOM05D007502 ORTHO05D010230 3.4e-22 109.0 157 45.9
Psat2g171920 Pisum sativum HOM05D007502 ORTHO05D010230 9.8e-22 107.5 126 56.3
CiPaw.01G003100 Carya illinoinensis HOM05D007502 ORTHO05D010230 2.7e-19 99.4 172 39.5
Ciclev10027603m.g Citrus clementina HOM05D007502 ORTHO05D010230 2.3e-18 96.3 173 41.6
Prupe.6G218900 Prunus persica HOM05D007502 ORTHO05D010230 8.6e-18 94.4 163 39.3
Cfa004764 Carpinus fangiana HOM05D007502 ORTHO05D010230 4.2e-17 92.0 170 41.2
CSS0024819 Camellia sinensis var. sinensis HOM05D007502 ORTHO05D010230 5.5e-17 91.7 168 39.3
MD15G1299000 Malus domestica HOM05D007502 ORTHO05D010230 2.1e-16 89.7 156 37.8
Cpa.g.c26343.2 Carica papaya HOM05D007502 ORTHO05D010230 1.4e-15 87.0 170 38.2
Gorai.007G225000 Gossypium raimondii HOM05D007502 ORTHO05D010230 1.4e-15 87.0 166 38.6
RcHm_v2.0_Chr2g0108411 Rosa chinensis HOM05D007502 ORTHO05D010230 1.4e-15 87.0 154 39.6
TPR.G9337 Trifolium pratense HOM05D007502 ORTHO05D010230 4.0e-15 85.5 111 53.2
CARHR279950 Cardamine hirsuta HOM05D007502 ORTHO05D010230 8.9e-15 84.3 156 43.6
COL.COLO4_11595 Corchorus olitorius HOM05D007502 ORTHO05D010230 9.8e-14 80.9 163 37.4
Gohir.D11G209800 Gossypium hirsutum HOM05D007502 ORTHO05D010230 9.8e-14 80.9 166 37.3
Potri.007G006000 Populus trichocarpa HOM05D007502 ORTHO05D010230 1.7e-13 80.1 179 38.5
Gohir.A11G213400 Gossypium hirsutum HOM05D007502 ORTHO05D010230 2.8e-13 79.3 162 36.4
BraA06t26210Z Brassica rapa HOM05D007502 ORTHO05D011692 4.9e-13 78.6 159 37.1
CANSAT01G3167 Cannabis sativa HOM05D007502 ORTHO05D010230 6.3e-13 78.2 165 37.6
vmacro05426 Vaccinium macrocarpon HOM05D007502 ORTHO05D010230 8.3e-13 77.8 162 34.6
C03p59700 Brassica napus HOM05D007502 ORTHO05D011692 1.4e-12 77.0 164 37.8
BolC3t18232H Brassica oleracea HOM05D007502 ORTHO05D011692 1.4e-12 77.0 164 37.8
BcaB02g09909 Brassica carinata HOM05D007502 ORTHO05D010230 5.4e-12 75.1 170 38.8
Duzib187G0517 Durio zibethinus HOM05D007502 ORTHO05D010230 7.0e-12 74.7 179 32.4
Thecc.01G074400 Theobroma cacao HOM05D007502 ORTHO05D010230 9.2e-12 74.3 163 32.5
TAR628G1349 Trochodendron aralioides HOM05D007502 ORTHO05D010230 1.2e-11 73.9 164 37.2
GSVIVG01002329001 Vitis vinifera HOM05D007502 ORTHO05D010230 1.2e-11 73.9 164 36.6
Haze_10361 Corylus avellana HOM05D007502 ORTHO05D010230 1.6e-11 73.6 166 36.1
Sopen02g036770 Solanum pennellii HOM05D007502 ORTHO05D010230 1.6e-11 73.6 157 35.0
DCAR_025816 Daucus carota HOM05D007502 ORTHO05D010230 2.7e-11 72.8 162 35.8
Carub.0008s2683 Capsella rubella HOM05D007502 ORTHO05D010230 5.9e-11 71.6 182 36.3
Cc07_g07260 Coffea canephora HOM05D007502 ORTHO05D010230 5.9e-11 71.6 137 38.7
Solyc02g092200.3 Solanum lycopersicum HOM05D007502 ORTHO05D010230 5.9e-11 71.6 154 36.4
Lsat_1_v5_gn_2_82580 Lactuca sativa HOM05D007502 ORTHO05D010230 1.0e-10 70.9 162 34.0
Nitab4.5_0000142g0280 Nicotiana tabacum HOM05D007502 ORTHO05D010230 1.0e-10 70.9 180 30.0
A06p32780 Brassica napus HOM05D007502 ORTHO05D011692 2.3e-10 69.7 156 35.3
AT5G67640 Arabidopsis thaliana HOM05D007502 ORTHO05D010230 3.8e-10 68.9 182 33.0
Thhalv10005075m.g Eutrema salsugineum HOM05D007502 ORTHO05D010230 6.6e-10 68.2 125 38.4
Eucgr.I00691 Eucalyptus grandis HOM05D007502 ORTHO05D010230 1.9e-09 66.6 182 33.5
PGSC0003DMG401021412 Solanum tuberosum HOM05D007502 ORTHO05D010230 1.9e-09 66.6 148 37.8
MSTRG.3478 Avicennia marina HOM05D007502 ORTHO05D010230 9.5e-09 64.3 143 36.4
Peaxi162Scf00548g00223 Petunia axillaris HOM05D007502 ORTHO05D010230 2.1e-08 63.2 139 36.0
Actinidia11971 Actinidia chinensis HOM05D007502 ORTHO05D010230 3.6e-08 62.4 112 39.3
CSS0004026 Camellia sinensis var. sinensis HOM05D007502 ORTHO05D010230 4.7e-08 62.0 131 36.6
ECA238G4396 Erigeron canadensis HOM05D007502 ORTHO05D010230 6.1e-08 61.6 164 34.8
Sabra07G0004300 Salix brachista HOM05D007502 ORTHO05D010230 6.1e-08 61.6 174 33.3
RhsimUnG0241800 Rhododendron simsii HOM05D007502 ORTHO05D010230 8.0e-08 61.2 121 39.7
CDE06G1988 Ceratophyllum demersum HOM05D007502 ORTHO05D010230 1.0e-07 60.8 105 36.2
Lsat_1_v5_gn_5_174300 Lactuca sativa HOM05D007502 ORTHO05D010230 6.8e-07 58.2 107 36.4
FAN23G3114 Fragaria x ananassa HOM05D007502 ORTHO05D010230 8.9e-07 57.8 99 43.4
Dinv26948 Davidia involucrata HOM05D001896 ORTHO05D001862 4.4e-06 55.5 115 35.7


User provided reference genes

Program Settings