Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G043400 Glycine max HOM05D004120 ORTHO05D004951 1.0e-224 783.1 405 100.0
Phvul.002G007300 Phaseolus vulgaris HOM05D004120 ORTHO05D004951 2.4e-197 692.2 411 89.3
VMungo1215G0016 Vigna mungo HOM05D004120 ORTHO05D004951 2.7e-193 678.7 371 93.8
arahy.Tifrunner.gnm1.ann1.482M5A Arachis hypogaea HOM05D004120 ORTHO05D004951 5.0e-179 631.3 375 89.9
arahy.Tifrunner.gnm1.ann1.G7H05W Arachis hypogaea HOM05D004120 ORTHO05D004951 5.0e-179 631.3 375 89.9
Glyma.01G198500 Glycine max HOM05D004120 ORTHO05D004951 4.9e-174 614.8 324 96.6
Lalb_Chr05g0213941 Lupinus albus HOM05D004120 ORTHO05D004951 2.0e-172 609.4 370 85.7
Ca_24652_v3 Cicer arietinum L. HOM05D004120 ORTHO05D004951 2.9e-171 605.5 372 86.3
Lalb_Chr16g0379111 Lupinus albus HOM05D004120 ORTHO05D004951 5.6e-170 601.3 374 85.0
Medtr5g014430 Medicago truncatula HOM05D004120 ORTHO05D004951 4.7e-169 598.2 376 85.4
Lj2g0014948 Lotus japonicus HOM05D004120 ORTHO05D004951 6.8e-168 594.3 374 85.6
TPR.G7833 Trifolium pratense HOM05D004120 ORTHO05D004951 6.8e-168 594.3 375 84.5
CiPaw.11G092700 Carya illinoinensis HOM05D004120 ORTHO05D004951 3.4e-159 565.5 365 80.5
Cfa012429 Carpinus fangiana HOM05D004120 ORTHO05D004951 7.3e-154 547.7 374 75.7
TWI81G0459 Tripterygium wilfordii HOM05D004120 ORTHO05D004951 3.1e-152 542.3 343 80.2
Psat2g173200 Pisum sativum HOM05D004120 ORTHO05D004951 1.5e-151 540.0 374 78.3
TAR629G2715 Trochodendron aralioides HOM05D004120 ORTHO05D004951 8.3e-150 534.3 374 75.7
Nn6g33597 Nelumbo nucifera HOM05D004120 ORTHO05D004951 1.1e-149 533.9 386 75.1
GSVIVG01013166001 Vitis vinifera HOM05D004120 ORTHO05D004951 5.4e-149 531.6 376 75.5
Hma1.2p1_0585F.1_g183700 Hydrangea macrophylla HOM05D004120 ORTHO05D004951 9.2e-149 530.8 354 78.0
PGR031G2717 Punica granatum HOM05D004120 ORTHO05D004951 9.2e-149 530.8 375 75.5
Duzib084G1060 Durio zibethinus HOM05D004120 ORTHO05D004951 2.1e-148 529.6 374 74.3
CiPaw.12G063200 Carya illinoinensis HOM05D004120 ORTHO05D004951 3.5e-148 528.9 367 75.7
COL.COLO4_17048 Corchorus olitorius HOM05D004120 ORTHO05D004951 3.5e-148 528.9 327 82.9
Thecc.03G228600 Theobroma cacao HOM05D004120 ORTHO05D004951 3.5e-148 528.9 374 74.1
QL12p005624 Quercus lobata HOM05D004120 ORTHO05D004951 3.9e-147 525.4 383 72.6
Gohir.D08G177300 Gossypium hirsutum HOM05D004120 ORTHO05D004951 2.5e-146 522.7 368 75.0
Gohir.A08G156900 Gossypium hirsutum HOM05D004120 ORTHO05D004951 5.6e-146 521.5 368 74.7
Potri.001G143400 Populus trichocarpa HOM05D004120 ORTHO05D004951 7.3e-146 521.2 330 81.5
CANSAT21G2618 Cannabis sativa HOM05D004120 ORTHO05D004951 1.6e-145 520.0 378 74.3
Dinv28953 Davidia involucrata HOM05D004120 ORTHO05D004951 2.1e-145 519.6 347 77.5
Sed0006792 Sechium edule HOM05D004120 ORTHO05D004951 2.8e-145 519.2 369 74.8
Nn1g00518 Nelumbo nucifera HOM05D004120 ORTHO05D004951 3.6e-145 518.8 384 73.4
Eucgr.D02191 Eucalyptus grandis HOM05D004120 ORTHO05D004951 4.7e-145 518.5 326 81.3
Aqoxy3G02384 Aquilegia oxysepala HOM05D004120 ORTHO05D004951 1.1e-144 517.3 375 73.1
CsaV3_3G001840 Cucumis sativus L. HOM05D004120 ORTHO05D004951 1.4e-144 516.9 369 74.8
MD00G1220600 Malus domestica HOM05D004120 ORTHO05D004951 2.4e-144 516.2 359 76.6
MELO3C013859.2 Cucumis melo HOM05D004120 ORTHO05D004951 1.2e-143 513.8 369 74.5
Cpa.g.sc239.7 Carica papaya HOM05D004120 ORTHO05D004951 2.6e-143 512.7 324 81.2
Ciclev10031866m.g Citrus clementina HOM05D004120 ORTHO05D004951 4.4e-143 511.9 374 73.3
Dinv25212 Davidia involucrata HOM05D004120 ORTHO05D004951 4.4e-143 511.9 346 78.3
Gorai.004G185700 Gossypium raimondii HOM05D004120 ORTHO05D004951 7.6e-143 511.1 385 71.4
ClCG10G001730 Citrullus lanatus HOM05D004120 ORTHO05D004951 9.9e-143 510.8 321 82.2
FvH4_5g21880 Fragaria vesca HOM05D004120 ORTHO05D004951 1.7e-142 510.0 374 73.8
FAN18G3415 Fragaria x ananassa HOM05D004120 ORTHO05D004951 3.8e-142 508.8 374 73.5
CSS0046330 Camellia sinensis var. sinensis HOM05D004120 ORTHO05D004951 1.4e-141 506.9 357 75.4
Lsat_1_v5_gn_6_79560 Lactuca sativa HOM05D004120 ORTHO05D004951 4.1e-141 505.4 370 72.4
DCAR_008274 Daucus carota HOM05D004120 ORTHO05D004951 5.4e-141 505.0 365 73.7
FAN04G1856 Fragaria x ananassa HOM05D004120 ORTHO05D004951 5.4e-141 505.0 374 73.0
Manes.17G013200 Manihot esculenta HOM05D004120 ORTHO05D004951 7.1e-141 504.6 357 74.2
MSTRG.13757 Avicennia marina HOM05D004120 ORTHO05D004951 9.2e-141 504.2 315 80.3
PGSC0003DMG402001159 Solanum tuberosum HOM05D004120 ORTHO05D004951 1.6e-140 503.4 365 73.2
CAN.G1216.15 Capsicum annuum HOM05D004120 ORTHO05D004951 2.7e-140 502.7 366 73.5
RcHm_v2.0_Chr7g0209431 Rosa chinensis HOM05D004120 ORTHO05D004951 3.5e-140 502.3 374 71.7
Sabra01G0111800 Salix brachista HOM05D004120 ORTHO05D004951 7.8e-140 501.1 409 67.7
AUR62018721 Chenopodium quinoa HOM05D004120 ORTHO05D004951 1.3e-139 500.4 305 83.3
EL10Ac5g12129 Beta vulgaris HOM05D004120 ORTHO05D004951 1.7e-139 500.0 362 73.8
Prupe.5G038500 Prunus persica HOM05D004120 ORTHO05D004951 3.9e-139 498.8 362 74.0
Sc01g0007480 Simmondsia chinensis HOM05D004120 ORTHO05D004951 8.7e-139 497.7 322 80.1
Sopen08g001030 Solanum pennellii HOM05D004120 ORTHO05D004951 4.3e-138 495.4 367 73.6
ECA240G4620 Erigeron canadensis HOM05D004120 ORTHO05D004951 5.6e-138 495.0 328 78.0
Cc08_g02620 Coffea canephora HOM05D004120 ORTHO05D004951 7.3e-138 494.6 346 75.1
Oeu028027.1 Olea europaea HOM05D004120 ORTHO05D004951 9.0e-136 487.6 308 80.8
Hund14402 Selenicereus undatus HOM05D004120 ORTHO05D004951 1.2e-135 487.3 345 74.5
ATR0049G040 Amborella trichopoda HOM05D004120 ORTHO05D004951 9.9e-135 484.2 326 75.2
CARHR129420 Cardamine hirsuta HOM05D004120 ORTHO05D004951 9.9e-135 484.2 324 76.5
CDE03G0015 Ceratophyllum demersum HOM05D004120 ORTHO05D004951 9.9e-135 484.2 327 74.3
PSO782G3668 Papaver somniferum HOM05D004120 ORTHO05D004951 9.9e-135 484.2 323 76.2
AL4G31300 Arabidopsis lyrata HOM05D004120 ORTHO05D004951 2.2e-134 483.0 369 69.4
Rhsim11G0014500 Rhododendron simsii HOM05D004120 ORTHO05D004951 2.9e-134 482.6 353 73.4
Oeu053047.1 Olea europaea HOM05D004120 ORTHO05D004951 3.8e-134 482.3 307 80.1
THA.LOC104807951 Tarenaya hassleriana HOM05D004120 ORTHO05D004951 3.8e-134 482.3 359 71.0
PSO063G1634 Papaver somniferum HOM05D004120 ORTHO05D004951 4.9e-134 481.9 326 75.8
HanXRQChr03g0084021 Helianthus annuus HOM05D004120 ORTHO05D004951 8.4e-134 481.1 334 74.9
Migut.E00930 Erythranthe guttata HOM05D004120 ORTHO05D004951 1.9e-133 479.9 318 76.4
Sp4g17480 Schrenkiella parvula HOM05D004120 ORTHO05D004951 9.3e-133 477.6 379 67.8
BcaB02g09465 Brassica carinata HOM05D004120 ORTHO05D004951 1.6e-132 476.9 326 75.8
BcaC01g05734 Brassica carinata HOM05D004120 ORTHO05D004951 2.1e-132 476.5 321 76.3
C03p22720 Brassica napus HOM05D004120 ORTHO05D004951 2.7e-132 476.1 374 68.7
BolC4t22936H Brassica oleracea HOM05D004120 ORTHO05D004951 3.5e-132 475.7 323 75.2
Ah.12g054990 Amaranthus hybridus HOM05D004120 ORTHO05D004951 4.6e-132 475.3 330 75.5
BraA05t19989Z Brassica rapa HOM05D004120 ORTHO05D004951 4.6e-132 475.3 376 68.1
Thhalv10016805m.g Eutrema salsugineum HOM05D004120 ORTHO05D004951 4.6e-132 475.3 379 67.5
BcaC02g11630 Brassica carinata HOM05D004120 ORTHO05D004951 6.0e-132 474.9 324 75.3
C04p12920 Brassica napus HOM05D004120 ORTHO05D004951 6.0e-132 474.9 324 75.3
A03p19500 Brassica napus HOM05D004120 ORTHO05D004951 1.0e-131 474.2 375 69.1
Carub.0004s1696 Capsella rubella HOM05D004120 ORTHO05D004951 1.7e-131 473.4 383 65.3
A05p10510 Brassica napus HOM05D004120 ORTHO05D004951 2.3e-131 473.0 376 67.8
BolC3t14671H Brassica oleracea HOM05D004120 ORTHO05D004951 3.0e-131 472.6 374 68.4
BraA03t11203Z Brassica rapa HOM05D004120 ORTHO05D004951 5.1e-131 471.9 323 75.9
AT2G35260 Arabidopsis thaliana HOM05D004120 ORTHO05D004951 1.5e-130 470.3 379 67.3
unitig_699.g19781 Utricularia gibba HOM05D004120 ORTHO05D004951 7.3e-130 468.0 322 74.2
vmacro00332 Vaccinium macrocarpon HOM05D004120 ORTHO05D004951 4.8e-129 465.3 386 66.6
THA.LOC104798329 Tarenaya hassleriana HOM05D004120 ORTHO05D004951 6.2e-129 464.9 327 73.7
unitig_52.g17209 Utricularia gibba HOM05D004120 ORTHO05D004951 9.0e-128 461.1 315 74.3
AUR62007285 Chenopodium quinoa HOM05D004120 ORTHO05D004951 5.8e-127 458.4 300 79.0
HPP92_022140 Vanilla planifolia HOM05D004120 ORTHO05D004951 2.9e-126 456.1 300 76.0
HPP92_022143 Vanilla planifolia HOM05D004120 ORTHO05D004951 4.9e-126 455.3 369 65.6
AL716U10010 Arabidopsis lyrata HOM05D004120 ORTHO05D004951 2.4e-125 453.0 369 66.4
Peaxi162Scf00045g00028 Petunia axillaris HOM05D004120 ORTHO05D004951 7.1e-125 451.4 366 68.0
Aa31LG6G560 Aethionema arabicum HOM05D004120 ORTHO05D004951 2.7e-124 449.5 352 67.0
Zm00001eb426630 Zea mays HOM05D004120 ORTHO05D004951 4.6e-124 448.7 281 76.9
Thhalv10025287m.g Eutrema salsugineum HOM05D004120 ORTHO05D004951 1.8e-123 446.8 348 66.4
ECA246G0968 Erigeron canadensis HOM05D004120 ORTHO05D004951 3.0e-123 446.0 300 75.3
Carub.0007s2352 Capsella rubella HOM05D004120 ORTHO05D004951 6.7e-123 444.9 303 72.6
Sp7g16270 Schrenkiella parvula HOM05D004120 ORTHO05D004951 6.7e-123 444.9 355 65.1
CARHR224560 Cardamine hirsuta HOM05D004120 ORTHO05D004951 2.5e-122 443.0 355 65.1
Os03g0100030 Oryza sativa ssp. japonica HOM05D004120 ORTHO05D004951 2.5e-122 443.0 277 76.5
SGA_v2.0_scaffold54G19447 Striga asiatica HOM05D004120 ORTHO05D004951 8.1e-121 438.0 435 56.6
C07p49190 Brassica napus HOM05D004120 ORTHO05D004951 1.1e-120 437.6 336 67.0
BcaNung00052 Brassica carinata HOM05D004120 ORTHO05D004951 1.2e-119 434.1 409 58.2
Aa31LG9G15290 Aethionema arabicum HOM05D004120 ORTHO05D004951 2.0e-119 433.3 409 59.9
A03p50800 Brassica napus HOM05D004120 ORTHO05D004951 2.0e-119 433.3 282 75.5
BraA03t14169Z Brassica rapa HOM05D004120 ORTHO05D004951 2.0e-119 433.3 282 75.5
AL7G36690 Arabidopsis lyrata HOM05D004120 ORTHO05D004951 3.4e-119 432.6 276 76.1
AT4G17840 Arabidopsis thaliana HOM05D004120 ORTHO05D004951 4.5e-119 432.2 281 75.1
A01p09890 Brassica napus HOM05D004120 ORTHO05D004951 5.8e-119 431.8 401 58.1
BcaC09g51598 Brassica carinata HOM05D004120 ORTHO05D004951 3.8e-118 429.1 343 65.6
C01p11590 Brassica napus HOM05D004120 ORTHO05D004951 3.8e-118 429.1 343 65.6
BolC1t01127H Brassica oleracea HOM05D004120 ORTHO05D004951 3.8e-118 429.1 343 65.6
BraA01t00933Z Brassica rapa HOM05D004120 ORTHO05D004951 3.8e-118 429.1 343 65.6
Solyc08g005010.4 Solanum lycopersicum HOM05D004120 ORTHO05D004951 5.1e-115 418.7 319 72.4
Atru.chr6.1717 Acer truncatum HOM05D004120 ORTHO05D004951 6.9e-112 408.3 300 73.0
BolC7t45429H Brassica oleracea HOM05D004120 ORTHO05D004951 1.2e-108 397.5 301 68.8
SEGI_24472 Sequoiadendron giganteum HOM05D004120 ORTHO05D004951 3.0e-107 392.9 333 61.6
Haze_08240 Corylus avellana HOM05D004120 ORTHO05D004951 5.1e-107 392.1 329 65.0
MD06G1033000 Malus domestica HOM05D004120 ORTHO05D004951 8.2e-105 384.8 263 75.7
Duzib205G1837 Durio zibethinus HOM05D004120 ORTHO05D004951 1.7e-102 377.1 301 69.1
Nitab4.5_0000804g0170 Nicotiana tabacum HOM05D004120 ORTHO05D004951 2.1e-100 370.2 212 86.8
FAN13G1981 Fragaria x ananassa HOM05D004120 ORTHO05D004951 1.3e-89 334.3 277 68.2
Actinidia28172 Actinidia chinensis HOM05D004120 ORTHO05D004951 2.2e-89 333.6 190 87.9
FAN08G2335 Fragaria x ananassa HOM05D004120 ORTHO05D004951 2.2e-89 333.6 277 68.2
Mapoly0008s0099 Marchantia polymorpha HOM05D004120 ORTHO05D004951 1.2e-87 327.8 273 57.9
Pp3c10_10980 Physcomitrium patens HOM05D004120 ORTHO05D004951 2.9e-86 323.2 283 57.6
Pp3c14_25270 Physcomitrium patens HOM05D004120 ORTHO05D004951 6.5e-86 322.0 273 59.3
unitig_744.g24311 Utricularia gibba HOM05D004120 ORTHO05D004951 9.4e-85 318.2 286 60.5
Nitab4.5_0002539g0020 Nicotiana tabacum HOM05D004120 ORTHO05D004951 2.6e-74 283.5 267 62.9
Actinidia25961 Actinidia chinensis HOM05D004120 ORTHO05D004951 2.7e-71 273.5 230 65.2
SMO356G0344 Selaginella moellendorffii HOM05D004120 ORTHO05D004951 8.5e-70 268.5 261 49.8
CDE06G0385 Ceratophyllum demersum HOM05D004120 ORTHO05D004951 1.2e-66 258.1 196 67.9
arahy.Tifrunner.gnm1.ann1.K2V32T Arachis hypogaea HOM05D004120 ORTHO05D004951 1.5e-66 257.7 181 75.7
arahy.Tifrunner.gnm1.ann1.7CR4HZ Arachis hypogaea HOM05D004120 ORTHO05D004951 4.4e-66 256.1 181 75.1
arahy.Tifrunner.gnm1.ann1.WRTU1C Arachis hypogaea HOM05D004120 ORTHO05D004951 1.1e-64 251.5 181 74.0
arahy.Tifrunner.gnm1.ann1.3C7WBJ Arachis hypogaea HOM05D004120 ORTHO05D004951 1.2e-63 248.1 136 92.6
HanXRQChr05g0153901 Helianthus annuus HOM05D004120 ORTHO05D004951 1.5e-58 231.1 162 75.3
arahy.Tifrunner.gnm1.ann1.B3D4NA Arachis hypogaea HOM05D004120 ORTHO05D004951 5.0e-46 189.5 103 91.3
arahy.Tifrunner.gnm1.ann1.4R7L3N Arachis hypogaea HOM05D004120 ORTHO05D004951 1.9e-45 187.6 104 90.4
arahy.Tifrunner.gnm1.ann1.AE9Z3E Arachis hypogaea HOM05D004120 ORTHO05D004951 1.6e-44 184.5 103 89.3
AagrBONN_evm.TU.Sc2ySwM_117.2801 Anthoceros agrestis HOM05D010715 ORTHO05D004951 8.3e-41 172.2 157 55.4
arahy.Tifrunner.gnm1.ann1.RCE8PR Arachis hypogaea HOM05D004120 ORTHO05D004951 1.1e-37 161.8 132 68.2
arahy.Tifrunner.gnm1.ann1.E125G1 Arachis hypogaea HOM05D004120 ORTHO05D004951 2.9e-33 147.1 76 93.4
arahy.Tifrunner.gnm1.ann1.BQ9W36 Arachis hypogaea HOM05D004120 ORTHO05D004951 1.4e-32 144.8 78 89.7
arahy.Tifrunner.gnm1.ann1.U1DJ88 Arachis hypogaea HOM05D004120 ORTHO05D007788 2.1e-31 141.0 79 88.6
Aa31sc618G30 Aethionema arabicum HOM05D004120 ORTHO05D004951 3.6e-28 130.2 169 49.7
arahy.Tifrunner.gnm1.ann1.H82JQN Arachis hypogaea HOM05D004120 ORTHO05D021518 5.2e-27 126.3 88 73.9
CBR_g56906 Chara braunii HOM05D004120 ORTHO05D004951 2.0e-26 124.4 114 47.4
arahy.Tifrunner.gnm1.ann1.L0EJKI Arachis hypogaea HOM05D004120 ORTHO05D004951 9.9e-26 122.1 62 90.3
AagrBONN_evm.TU.Sc2ySwM_117.3803 Anthoceros agrestis HOM05D004120 ORTHO05D004951 1.1e-24 118.6 102 53.9
arahy.Tifrunner.gnm1.ann1.JI8VIY Arachis hypogaea HOM05D004120 ORTHO05D021518 3.9e-22 110.2 106 59.4
arahy.Tifrunner.gnm1.ann1.NR0HVE Arachis hypogaea HOM05D004120 ORTHO05D021518 2.8e-20 104.0 58 93.1
EL10Ac1g01819 Beta vulgaris HOM05D004120 ORTHO05D023811 3.6e-20 103.6 74 71.6
RcHm_v2.0_Chr6g0284251 Rosa chinensis HOM05D004120 ORTHO05D004951 3.6e-20 103.6 74 68.9
CBR_g19263 Chara braunii HOM05D004120 ORTHO05D004951 6.9e-19 99.4 141 41.8
AUR62039713 Chenopodium quinoa HOM05D004317 ORTHO05D005031 2.4e-16 90.9 55 80.0
CAN.G399.4 Capsicum annuum HOM05D004120 ORTHO05D004951 2.3e-14 84.3 55 76.4
CAN.G36.13 Capsicum annuum HOM05D004120 ORTHO05D004951 3.9e-14 83.6 53 73.6
Aa31sc185G30 Aethionema arabicum HOM05D004120 ORTHO05D004951 2.3e-06 57.8 141 31.9
A01p32880 Brassica napus HOM05D004120 ORTHO05D023811 6.7e-06 56.2 28 92.9
A06p35780 Brassica napus HOM05D004120 ORTHO05D023811 6.7e-06 56.2 28 92.9
BraA01t03409Z Brassica rapa HOM05D004120 ORTHO05D023811 6.7e-06 56.2 28 92.9


User provided reference genes

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