Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G043300 Glycine max HOM05D004850 ORTHO05D005971 1.7e-260 902.1 439 100.0
Phvul.002G007200 Phaseolus vulgaris HOM05D004850 ORTHO05D005971 7.7e-242 840.1 433 92.1
VMungo1215G1005 Vigna mungo HOM05D004850 ORTHO05D005971 7.7e-242 840.1 433 92.4
Lj2g0005935 Lotus japonicus HOM05D004850 ORTHO05D005971 1.6e-239 832.4 439 89.7
Ca_24651_v3 Cicer arietinum L. HOM05D004850 ORTHO05D005971 1.4e-238 829.3 439 89.7
Lalb_Chr05g0213951 Lupinus albus HOM05D004850 ORTHO05D005971 2.0e-234 815.5 439 87.2
CiPaw.11G092600 Carya illinoinensis HOM05D004850 ORTHO05D005971 8.5e-233 810.1 436 87.2
Psat2g173240 Pisum sativum HOM05D004850 ORTHO05D005971 8.5e-233 810.1 439 86.8
arahy.Tifrunner.gnm1.ann1.IM2DA2 Arachis hypogaea HOM05D004850 ORTHO05D005971 1.1e-232 809.7 428 89.5
arahy.Tifrunner.gnm1.ann1.Y05B39 Arachis hypogaea HOM05D004850 ORTHO05D005971 1.1e-232 809.7 428 89.5
Medtr5g014410 Medicago truncatula HOM05D004850 ORTHO05D005971 3.2e-232 808.1 434 87.1
Lalb_Chr16g0379121 Lupinus albus HOM05D004850 ORTHO05D005971 9.4e-232 806.6 434 87.6
CANSAT21G2632 Cannabis sativa HOM05D004850 ORTHO05D005971 2.1e-231 805.4 439 85.9
Prupe.5G038300 Prunus persica HOM05D004850 ORTHO05D005971 2.1e-231 805.4 439 86.3
Cfa012428 Carpinus fangiana HOM05D004850 ORTHO05D005971 2.6e-229 798.5 451 83.6
MD06G1033100 Malus domestica HOM05D004850 ORTHO05D005971 2.6e-229 798.5 438 84.5
Haze_08241 Corylus avellana HOM05D004850 ORTHO05D005971 3.4e-229 798.1 436 85.6
MD16G1275900 Malus domestica HOM05D004850 ORTHO05D005971 5.7e-229 797.3 439 85.2
Eucgr.D02190 Eucalyptus grandis HOM05D004850 ORTHO05D005971 2.4e-227 792.0 439 84.5
RcHm_v2.0_Chr7g0209441 Rosa chinensis HOM05D004850 ORTHO05D005971 9.1e-227 790.0 441 83.9
Thecc.03G228700 Theobroma cacao HOM05D004850 ORTHO05D005971 2.7e-226 788.5 437 84.7
FAN08G3086 Fragaria x ananassa HOM05D004850 ORTHO05D005971 5.0e-225 784.3 430 84.7
FAN13G0589 Fragaria x ananassa HOM05D004850 ORTHO05D005971 5.0e-225 784.3 430 84.4
FvH4_5g21890 Fragaria vesca HOM05D004850 ORTHO05D005971 4.2e-224 781.2 430 84.4
Duzib084G0351 Durio zibethinus HOM05D004850 ORTHO05D005971 9.5e-224 780.0 437 84.0
FAN18G1246 Fragaria x ananassa HOM05D004850 ORTHO05D005971 1.2e-223 779.6 430 84.2
Gohir.A03G001400 Gossypium hirsutum HOM05D004850 ORTHO05D005971 1.6e-223 779.2 437 83.8
Ciclev10031569m.g Citrus clementina HOM05D004850 ORTHO05D005971 2.8e-223 778.5 437 83.8
Gohir.D03G170933 Gossypium hirsutum HOM05D004850 ORTHO05D005971 6.1e-223 777.3 437 83.8
Peaxi162Scf00460g00615 Petunia axillaris HOM05D004850 ORTHO05D005971 8.0e-223 776.9 439 82.5
Actinidia03377 Actinidia chinensis HOM05D004850 ORTHO05D005971 1.0e-222 776.5 439 82.7
Psat2g173320 Pisum sativum HOM05D004850 ORTHO05D005971 2.3e-222 775.4 439 82.9
COL.COLO4_17049 Corchorus olitorius HOM05D004850 ORTHO05D005971 5.2e-222 774.2 437 83.1
Duzib205G2010 Durio zibethinus HOM05D004850 ORTHO05D005971 1.5e-221 772.7 437 82.8
Nn6g33598 Nelumbo nucifera HOM05D004850 ORTHO05D005971 2.0e-221 772.3 439 82.2
TWI15G0149 Tripterygium wilfordii HOM05D004850 ORTHO05D005971 4.4e-221 771.2 437 81.7
Hma1.2p1_0991F.1_g245100 Hydrangea macrophylla HOM05D004850 ORTHO05D005971 5.7e-221 770.8 439 82.7
Manes.17G013000 Manihot esculenta HOM05D004850 ORTHO05D005971 1.3e-220 769.6 430 83.3
Sp7g16280 Schrenkiella parvula HOM05D004850 ORTHO05D005971 3.7e-220 768.1 432 82.9
Sopen08g025570 Solanum pennellii HOM05D004850 ORTHO05D005971 4.9e-220 767.7 439 81.1
C07p49180 Brassica napus HOM05D004850 ORTHO05D005971 8.3e-220 766.9 435 81.4
BolC7t45428H Brassica oleracea HOM05D004850 ORTHO05D005971 8.3e-220 766.9 435 81.4
Thhalv10025214m.g Eutrema salsugineum HOM05D004850 ORTHO05D005971 1.1e-219 766.5 437 81.2
Solyc08g076990.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 1.1e-219 766.5 439 81.1
CARHR224550 Cardamine hirsuta HOM05D004850 ORTHO05D005971 1.4e-219 766.1 438 81.3
AL7G36700 Arabidopsis lyrata HOM05D004850 ORTHO05D005971 2.4e-219 765.4 432 82.2
CAN.G1381.2 Capsicum annuum HOM05D004850 ORTHO05D005971 3.1e-219 765.0 439 81.3
Nitab4.5_0001963g0010 Nicotiana tabacum HOM05D004850 ORTHO05D005971 3.1e-219 765.0 429 83.0
THA.LOC104827763 Tarenaya hassleriana HOM05D004850 ORTHO05D005971 3.1e-219 765.0 432 81.5
Dinv25211 Davidia involucrata HOM05D004850 ORTHO05D005971 4.1e-219 764.6 437 81.5
Aqoxy3G02383 Aquilegia oxysepala HOM05D004850 ORTHO05D005971 5.4e-219 764.2 439 80.4
A03p50790 Brassica napus HOM05D004850 ORTHO05D005971 5.4e-219 764.2 435 80.9
AT4G17830 Arabidopsis thaliana HOM05D004850 ORTHO05D005971 2.7e-218 761.9 432 81.9
BraA03t14168Z Brassica rapa HOM05D004850 ORTHO05D005971 2.7e-218 761.9 435 80.7
BcaC09g51599 Brassica carinata HOM05D004850 ORTHO05D005971 4.5e-218 761.1 431 81.4
CSS0027944 Camellia sinensis var. sinensis HOM05D004850 ORTHO05D005971 4.5e-218 761.1 439 80.4
Carub.0007s2353 Capsella rubella HOM05D004850 ORTHO05D005971 4.5e-218 761.1 432 81.9
TAR629G1238 Trochodendron aralioides HOM05D004850 ORTHO05D005971 4.5e-218 761.1 429 83.0
A01p09880 Brassica napus HOM05D004850 ORTHO05D005971 5.9e-218 760.8 431 81.9
Potri.001G143200 Populus trichocarpa HOM05D004850 ORTHO05D005971 7.8e-218 760.4 429 83.0
MSTRG.1982 Avicennia marina HOM05D004850 ORTHO05D005971 5.0e-217 757.7 437 81.5
Cpa.g.sc239.6 Carica papaya HOM05D004850 ORTHO05D005971 6.6e-217 757.3 439 82.2
Sc01g0007470 Simmondsia chinensis HOM05D004850 ORTHO05D005971 1.9e-216 755.7 445 79.8
Aa31LG6G570 Aethionema arabicum HOM05D004850 ORTHO05D005971 2.5e-216 755.4 439 81.1
unitig_21.g20382 Utricularia gibba HOM05D004850 ORTHO05D005971 1.2e-215 753.1 428 82.5
Potri.003G091100 Populus trichocarpa HOM05D004850 ORTHO05D005971 1.6e-215 752.7 433 81.5
PGR031G0111 Punica granatum HOM05D004850 ORTHO05D005971 2.8e-215 751.9 437 78.7
BraA01t00932Z Brassica rapa HOM05D004850 ORTHO05D005971 6.1e-215 750.7 446 79.1
ECA233G2661 Erigeron canadensis HOM05D004850 ORTHO05D005971 2.3e-214 748.8 430 80.7
Migut.E00931 Erythranthe guttata HOM05D004850 ORTHO05D005971 3.1e-214 748.4 437 79.4
Lj2A240G35 Lonicera japonica HOM05D004850 ORTHO05D005971 3.1e-214 748.4 495 72.3
Lsat_1_v5_gn_6_64460 Lactuca sativa HOM05D004850 ORTHO05D005971 4.0e-214 748.0 435 79.1
EL10Ac5g12130 Beta vulgaris HOM05D004850 ORTHO05D005971 1.5e-213 746.1 437 78.7
HanXRQChr06g0178401 Helianthus annuus HOM05D004850 ORTHO05D005971 7.5e-213 743.8 429 79.5
HPP92_001721 Vanilla planifolia HOM05D004850 ORTHO05D005971 7.5e-213 743.8 434 79.5
PSO063G6489 Papaver somniferum HOM05D004850 ORTHO05D005971 9.8e-213 743.4 429 79.3
CDE11G0367 Ceratophyllum demersum HOM05D004850 ORTHO05D005971 1.7e-212 742.7 435 79.1
Ah.12g054980 Amaranthus hybridus HOM05D004850 ORTHO05D005971 2.2e-212 742.3 439 78.6
AUR62018722 Chenopodium quinoa HOM05D004850 ORTHO05D005971 1.1e-211 740.0 439 78.4
ATR0049G003 Amborella trichopoda HOM05D004850 ORTHO05D005971 2.7e-210 735.3 429 79.5
Sabra01G0111700 Salix brachista HOM05D004850 ORTHO05D005971 1.0e-209 733.4 467 74.7
Gorai.003G181400 Gossypium raimondii HOM05D004850 ORTHO05D005971 6.6e-209 730.7 417 82.7
HanXRQChr10g0285061 Helianthus annuus HOM05D004850 ORTHO05D005971 7.3e-208 727.2 429 78.1
vmacro00333 Vaccinium macrocarpon HOM05D004850 ORTHO05D005971 3.6e-207 724.9 412 82.3
Oeu006991.2 Olea europaea HOM05D004850 ORTHO05D005971 2.3e-206 722.2 508 69.7
Rhsim11G0014400 Rhododendron simsii HOM05D004850 ORTHO05D005971 2.4e-203 712.2 420 79.0
SGA_v2.0_scaffold20G09279 Striga asiatica HOM05D004850 ORTHO05D005971 2.4e-203 712.2 523 67.5
Sopen08g025550 Solanum pennellii HOM05D004850 ORTHO05D005971 1.6e-199 699.5 428 75.7
Solyc08g076970.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 3.1e-198 695.3 428 75.0
DCAR_031774 Daucus carota HOM05D004850 ORTHO05D005971 1.2e-197 693.3 407 79.1
Sopen08g025560 Solanum pennellii HOM05D004850 ORTHO05D005971 4.4e-197 691.4 429 74.8
Sabra03G0060800 Salix brachista HOM05D004850 ORTHO05D005971 2.2e-196 689.1 396 81.1
Dinv28952 Davidia involucrata HOM05D004850 ORTHO05D005971 8.3e-196 687.2 391 82.6
SMO353G0234 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 2.4e-195 685.6 427 74.9
Os02g0690800 Oryza sativa ssp. japonica HOM05D004850 ORTHO05D005971 3.0e-193 678.7 439 72.4
Zm00001eb251190 Zea mays HOM05D004850 ORTHO05D005971 3.3e-192 675.2 441 71.2
MELO3C003400.2 Cucumis melo HOM05D004850 ORTHO05D005971 5.6e-192 674.5 429 73.2
PGSC0003DMG400017513 Solanum tuberosum HOM05D004850 ORTHO05D005971 1.2e-191 673.3 428 73.8
Sed0023890 Sechium edule HOM05D004850 ORTHO05D005971 1.8e-190 669.5 439 71.1
AagrBONN_evm.TU.Sc2ySwM_117.1258 Anthoceros agrestis HOM05D004850 ORTHO05D005971 2.4e-190 669.1 427 72.6
Solyc08g076980.4 Solanum lycopersicum HOM05D004850 ORTHO05D005971 2.6e-189 665.6 429 73.0
Pp3c6_20970 Physcomitrium patens HOM05D004850 ORTHO05D005971 1.4e-187 659.8 427 72.1
Sed0011615 Sechium edule HOM05D004850 ORTHO05D005971 1.4e-187 659.8 439 69.5
GSVIVG01013167001 Vitis vinifera HOM05D004850 ORTHO05D005971 9.9e-181 637.1 340 87.4
ClCG09G012040 Citrullus lanatus HOM05D004850 ORTHO05D005971 1.3e-180 636.7 428 68.0
Nn1g00519 Nelumbo nucifera HOM05D004850 ORTHO05D005971 2.2e-180 636.0 429 72.5
ClCG09G012030 Citrullus lanatus HOM05D004850 ORTHO05D005971 5.6e-176 621.3 438 66.0
Atru.chr6.1718 Acer truncatum HOM05D004850 ORTHO05D005971 1.3e-175 620.2 339 86.1
Mapoly0013s0175 Marchantia polymorpha HOM05D004850 ORTHO05D005971 1.3e-175 620.2 427 68.1
Cc11_g03830 Coffea canephora HOM05D004850 ORTHO05D005971 7.6e-173 610.9 329 85.7
Cc00_g30170 Coffea canephora HOM05D004850 ORTHO05D005971 9.3e-171 604.0 342 81.9
AUR62007282 Chenopodium quinoa HOM05D004850 ORTHO05D005971 6.0e-170 601.3 390 73.8
CBR_g51240 Chara braunii HOM05D004850 ORTHO05D005971 1.3e-167 593.6 436 64.0
BolC1t01126H Brassica oleracea HOM05D004850 ORTHO05D005971 1.1e-166 590.5 355 78.9
CsaV3_3G049280 Cucumis sativus L. HOM05D004850 ORTHO05D005971 4.5e-165 585.1 443 62.1
MELO3C003399.2 Cucumis melo HOM05D004850 ORTHO05D005971 6.4e-164 581.3 443 62.1
MELO3C003398.2 Cucumis melo HOM05D004850 ORTHO05D005971 2.7e-162 575.9 432 64.1
Actinidia28173 Actinidia chinensis HOM05D004850 ORTHO05D005971 8.7e-161 570.9 440 66.1
Cre02.g105500 Chlamydomonas reinhardtii HOM05D004850 ORTHO05D005971 9.6e-160 567.4 426 60.6
QL12p005631 Quercus lobata HOM05D004850 ORTHO05D005971 3.9e-153 545.4 294 85.7
ClCG09G012020 Citrullus lanatus HOM05D004850 ORTHO05D005971 7.2e-147 524.6 348 71.6
CsaV3_3G049270 Cucumis sativus L. HOM05D004850 ORTHO05D005971 3.0e-145 519.2 332 72.9
SMO116G0259 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 1.4e-142 510.4 426 57.5
C01p11580 Brassica napus HOM05D004850 ORTHO05D005971 4.5e-141 505.4 384 65.9
MCO07G613 Micromonas commoda HOM05D004850 ORTHO05D005971 3.9e-129 465.7 432 52.8
Glyma.01G198600 Glycine max HOM05D004850 ORTHO05D005971 1.2e-125 454.1 243 91.4
MD06G1033200 Malus domestica HOM05D004850 ORTHO05D005971 4.2e-115 419.1 352 60.8
Nitab4.5_0008181g0010 Nicotiana tabacum HOM05D004850 ORTHO05D005971 1.2e-106 391.0 219 83.1
arahy.Tifrunner.gnm1.ann1.XXZT2J Arachis hypogaea HOM05D004850 ORTHO05D005971 4.7e-98 362.5 239 73.6
Sc02g0006900 Simmondsia chinensis HOM05D004850 ORTHO05D005971 3.7e-79 299.7 157 89.8
SHI07365 Sapria himalayana HOM05D004850 ORTHO05D005971 3.0e-76 290.0 184 73.4
Sc03g0003930 Simmondsia chinensis HOM05D004850 ORTHO05D005971 1.6e-74 284.3 151 84.1
HPP92_001566 Vanilla planifolia HOM05D004850 ORTHO05D005971 1.9e-67 260.8 197 67.0
Cc08_g02610 Coffea canephora HOM05D004850 ORTHO05D005971 3.1e-65 253.4 145 81.4
FAN04G0574 Fragaria x ananassa HOM05D004850 ORTHO05D005971 5.4e-62 242.7 134 85.1
Actinidia25960 Actinidia chinensis HOM05D004850 ORTHO05D005971 6.9e-57 225.7 235 54.5
Sc22g0003360 Simmondsia chinensis HOM05D004850 ORTHO05D005971 8.7e-52 208.8 113 84.1
SEGI_04366 Sequoiadendron giganteum HOM05D004850 ORTHO05D005971 7.6e-48 195.7 107 77.6
BcaNung00053 Brassica carinata HOM05D004850 ORTHO05D005971 6.2e-42 176.0 138 64.5
arahy.Tifrunner.gnm1.ann1.RD5L31 Arachis hypogaea HOM05D004850 ORTHO05D005971 6.5e-39 166.0 93 84.9
Sc22g0003350 Simmondsia chinensis HOM05D004850 ORTHO05D005971 8.4e-39 165.6 90 84.4
arahy.Tifrunner.gnm1.ann1.MBF31G Arachis hypogaea HOM05D004850 ORTHO05D005971 1.4e-33 148.3 165 50.3
SEGI_19032 Sequoiadendron giganteum HOM05D004850 ORTHO05D005971 1.4e-33 148.3 82 85.4
MD02G1199500 Malus domestica HOM05D004850 ORTHO05D048674 3.1e-33 147.1 205 40.0
Hma1.2p1_0090F.1_g045780 Hydrangea macrophylla HOM05D004850 ORTHO05D005971 1.7e-23 114.8 78 71.8
SHI07370 Sapria himalayana HOM05D004850 ORTHO05D005971 1.4e-22 111.7 67 70.1
SMO116G0465 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 4.2e-22 110.2 242 33.5
MD15G1380000 Malus domestica HOM05D004850 ORTHO05D048674 4.7e-21 106.7 57 75.4
Cc06_g05830 Coffea canephora HOM05D004850 ORTHO05D005971 1.4e-20 105.1 62 79.0
SHI07376 Sapria himalayana HOM05D004850 ORTHO05D005971 3.0e-20 104.0 65 63.1
arahy.Tifrunner.gnm1.ann1.00HL0A Arachis hypogaea HOM05D004850 ORTHO05D004353 3.8e-15 87.0 121 44.6
Lsat_1_v5_gn_9_53361 Lactuca sativa HOM05D003461 ORTHO05D004386 2.1e-13 81.3 94 46.8
Lsat_1_v5_gn_4_90040 Lactuca sativa HOM05D003461 ORTHO05D004386 1.0e-12 79.0 38 81.6
Lsat_1_v5_gn_8_141060 Lactuca sativa HOM05D003461 ORTHO05D004386 4.1e-09 67.0 41 65.9
AUR62007284 Chenopodium quinoa HOM05D000077 ORTHO05D014281 3.5e-08 63.9 47 61.7
SMO353G0042 Selaginella moellendorffii HOM05D019014 ORTHO05D379427 3.2e-06 57.4 69 47.8
Zm00001eb035260 Zea mays HOM05D002051 ORTHO05D002041 7.2e-06 56.2 258 24.8


User provided reference genes

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