Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G032400 Glycine max HOM05D005354 ORTHO05D006315 9.3e-240 833.2 432 100.0
Glyma.01G209800 Glycine max HOM05D005354 ORTHO05D006315 2.5e-216 755.4 414 94.4
Phvul.002G062800 Phaseolus vulgaris HOM05D005354 ORTHO05D006315 3.2e-208 728.4 432 85.4
arahy.Tifrunner.gnm1.ann1.BT71C1 Arachis hypogaea HOM05D005354 ORTHO05D006315 3.3e-205 718.4 432 84.3
arahy.Tifrunner.gnm1.ann1.LCH2QT Arachis hypogaea HOM05D005354 ORTHO05D006315 3.3e-205 718.4 432 84.3
Lj2g0013106 Lotus japonicus HOM05D005354 ORTHO05D006315 1.5e-202 709.5 432 83.8
Lalb_Chr09g0324401 Lupinus albus HOM05D005354 ORTHO05D006315 6.7e-198 694.1 429 81.4
Lalb_Chr05g0214491 Lupinus albus HOM05D005354 ORTHO05D006315 3.1e-195 685.3 432 80.3
VMungo1215G2766 Vigna mungo HOM05D005354 ORTHO05D006315 4.5e-194 681.4 414 84.5
Ca_24574_v3 Cicer arietinum L. HOM05D005354 ORTHO05D006315 2.2e-188 662.5 431 78.2
Psat2g177520 Pisum sativum HOM05D005354 ORTHO05D006315 1.1e-184 650.2 432 76.4
TPR.G25879 Trifolium pratense HOM05D005354 ORTHO05D006315 2.1e-183 646.0 432 76.2
Medtr5g012530 Medicago truncatula HOM05D005354 ORTHO05D006315 1.5e-181 639.8 431 75.6
QL12p012213 Quercus lobata HOM05D005354 ORTHO05D006315 8.8e-174 614.0 431 72.2
Nitab4.5_0000312g0100 Nicotiana tabacum HOM05D005354 ORTHO05D006315 2.5e-168 595.9 431 67.7
MD06G1057900 Malus domestica HOM05D005354 ORTHO05D006315 3.6e-167 592.0 432 69.4
Nitab4.5_0007598g0020 Nicotiana tabacum HOM05D005354 ORTHO05D006315 3.6e-167 592.0 431 67.5
Sed0003796 Sechium edule HOM05D005354 ORTHO05D006315 3.0e-166 589.0 425 70.4
GSVIVG01001321001 Vitis vinifera HOM05D005354 ORTHO05D006315 3.0e-166 589.0 429 69.9
Rhsim07G0108200 Rhododendron simsii HOM05D005354 ORTHO05D006315 6.8e-166 587.8 431 68.0
CiPaw.11G153900 Carya illinoinensis HOM05D005354 ORTHO05D006315 8.9e-166 587.4 431 70.3
CAN.G1367.6 Capsicum annuum HOM05D005354 ORTHO05D006315 2.6e-165 585.9 429 66.9
Ciclev10019626m.g Citrus clementina HOM05D005354 ORTHO05D006315 9.8e-165 583.9 431 66.8
Prupe.5G069200 Prunus persica HOM05D005354 ORTHO05D006315 1.7e-164 583.2 432 69.2
Oeu040216.1 Olea europaea HOM05D005354 ORTHO05D006315 2.8e-164 582.4 431 67.3
Actinidia27464 Actinidia chinensis HOM05D005354 ORTHO05D006315 3.7e-164 582.0 431 67.7
CsaV3_3G002740 Cucumis sativus L. HOM05D005354 ORTHO05D006315 3.7e-164 582.0 425 69.4
Solyc08g078660.3 Solanum lycopersicum HOM05D005354 ORTHO05D006315 3.7e-164 582.0 431 66.6
Sopen08g027140 Solanum pennellii HOM05D005354 ORTHO05D006315 6.3e-164 581.3 431 66.6
vmacro14088 Vaccinium macrocarpon HOM05D005354 ORTHO05D006315 6.3e-164 581.3 430 69.1
Potri.001G158200 Populus trichocarpa HOM05D005354 ORTHO05D006315 2.4e-163 579.3 431 68.4
TWI81G0349 Tripterygium wilfordii HOM05D005354 ORTHO05D006315 5.4e-163 578.2 432 67.1
ClCG10G002710 Citrullus lanatus HOM05D005354 ORTHO05D006315 4.5e-162 575.1 450 66.7
RcHm_v2.0_Chr7g0203181 Rosa chinensis HOM05D005354 ORTHO05D006315 7.8e-162 574.3 432 67.6
Potri.003G076600 Populus trichocarpa HOM05D005354 ORTHO05D006315 1.0e-161 573.9 425 69.2
MBI04_g09494_MAGBIO Magnolia biondii HOM05D005354 ORTHO05D006315 1.3e-161 573.5 431 66.6
MELO3C013942.2 Cucumis melo HOM05D005354 ORTHO05D006315 2.9e-161 572.4 451 65.9
CSS0011263 Camellia sinensis var. sinensis HOM05D005354 ORTHO05D006315 5.0e-161 571.6 431 66.4
Thecc.03G252000 Theobroma cacao HOM05D005354 ORTHO05D006315 5.6e-160 568.2 431 67.1
TWI60G0726 Tripterygium wilfordii HOM05D005354 ORTHO05D006315 2.1e-159 566.2 431 67.3
Manes.02G039200 Manihot esculenta HOM05D005354 ORTHO05D006315 3.6e-159 565.5 431 67.5
CANSAT21G0216 Cannabis sativa HOM05D005354 ORTHO05D006315 4.7e-159 565.1 432 67.1
MSTRG.25527 Avicennia marina HOM05D005354 ORTHO05D006315 1.4e-158 563.5 430 65.1
CSS0003507 Camellia sinensis var. sinensis HOM05D005354 ORTHO05D006315 5.2e-158 561.6 413 69.2
CSS0039308 Camellia sinensis var. sinensis HOM05D005354 ORTHO05D006315 5.2e-158 561.6 413 69.2
Cc08_g12480 Coffea canephora HOM05D005354 ORTHO05D006315 2.0e-157 559.7 431 62.9
TAR629G2416 Trochodendron aralioides HOM05D005354 ORTHO05D006315 4.4e-157 558.5 428 65.4
Manes.01G080300 Manihot esculenta HOM05D005354 ORTHO05D006315 7.5e-157 557.8 431 66.4
SGA_v2.0_scaffold54G19448 Striga asiatica HOM05D005354 ORTHO05D006315 7.5e-157 557.8 431 65.0
FvH4_5g18830 Fragaria vesca HOM05D005354 ORTHO05D006315 2.2e-156 556.2 432 64.8
Nn1g01007 Nelumbo nucifera HOM05D005354 ORTHO05D006315 2.2e-156 556.2 431 64.7
Sc01g0008460 Simmondsia chinensis HOM05D005354 ORTHO05D006315 2.2e-156 556.2 458 61.4
FAN04G2371 Fragaria x ananassa HOM05D005354 ORTHO05D006315 8.3e-156 554.3 432 64.6
FAN13G0823 Fragaria x ananassa HOM05D005354 ORTHO05D006315 8.3e-156 554.3 432 65.0
Sabra01G0133300 Salix brachista HOM05D005354 ORTHO05D006315 1.4e-155 553.5 477 61.4
Atru.chr9.1319 Acer truncatum HOM05D005354 ORTHO05D006315 3.2e-155 552.4 431 65.7
FAN08G0881 Fragaria x ananassa HOM05D005354 ORTHO05D006315 4.1e-155 552.0 432 64.6
FAN18G0938 Fragaria x ananassa HOM05D005354 ORTHO05D006315 5.4e-155 551.6 433 64.7
COL.COLO4_37182 Corchorus olitorius HOM05D005354 ORTHO05D006315 2.0e-154 549.7 430 62.8
Ah.02g116720 Amaranthus hybridus HOM05D005354 ORTHO05D006315 3.5e-154 548.9 435 64.4
Haze_07917 Corylus avellana HOM05D005354 ORTHO05D006315 4.6e-154 548.5 475 61.7
FAN18G2353 Fragaria x ananassa HOM05D005354 ORTHO05D006315 4.6e-154 548.5 433 64.4
Gohir.D03G162600 Gossypium hirsutum HOM05D005354 ORTHO05D006315 6.0e-154 548.1 430 64.7
EL10Ac5g13072 Beta vulgaris HOM05D005354 ORTHO05D006315 8.6e-153 544.3 431 63.8
Gohir.A03G008300 Gossypium hirsutum HOM05D005354 ORTHO05D006315 2.5e-152 542.7 430 64.0
ATR0317G109 Amborella trichopoda HOM05D005354 ORTHO05D006315 1.6e-151 540.0 432 63.0
Gorai.003G171200 Gossypium raimondii HOM05D005354 ORTHO05D006315 1.6e-151 540.0 440 63.2
Migut.E00837 Erythranthe guttata HOM05D005354 ORTHO05D006315 8.0e-151 537.7 432 62.7
Dinv39144 Davidia involucrata HOM05D005354 ORTHO05D006315 1.4e-150 537.0 429 64.8
Peaxi162Scf00174g00027 Petunia axillaris HOM05D005354 ORTHO05D006315 1.8e-150 536.6 468 60.0
PGR042G1820 Punica granatum HOM05D005354 ORTHO05D006315 1.8e-150 536.6 431 63.3
Aqoxy7G00759 Aquilegia oxysepala HOM05D005354 ORTHO05D006315 3.1e-150 535.8 430 62.8
Eucgr.E00426 Eucalyptus grandis HOM05D005354 ORTHO05D006315 1.2e-149 533.9 434 63.4
HanXRQChr03g0088591 Helianthus annuus HOM05D005354 ORTHO05D006315 1.3e-148 530.4 433 62.1
HPP92_015115 Vanilla planifolia HOM05D005354 ORTHO05D006315 4.9e-148 528.5 431 61.3
PSO017G6196 Papaver somniferum HOM05D005354 ORTHO05D006315 1.1e-147 527.3 431 61.5
Lsat_1_v5_gn_6_91180 Lactuca sativa HOM05D005354 ORTHO05D006315 1.9e-147 526.6 434 60.4
Lj2A217G28 Lonicera japonica HOM05D005354 ORTHO05D006315 4.1e-147 525.4 431 62.4
PSO170G3683 Papaver somniferum HOM05D005354 ORTHO05D006315 1.6e-146 523.5 431 61.3
CDE04G0953 Ceratophyllum demersum HOM05D005354 ORTHO05D006315 6.6e-145 518.1 431 59.2
Dinv21636 Davidia involucrata HOM05D005354 ORTHO05D006315 1.9e-144 516.5 431 63.1
THA.LOC104815494 Tarenaya hassleriana HOM05D005354 ORTHO05D006315 1.1e-142 510.8 430 60.5
Prupe.5G069100 Prunus persica HOM05D005354 ORTHO05D006315 1.5e-141 506.9 428 62.1
AL4G31810 Arabidopsis lyrata HOM05D005354 ORTHO05D006315 4.4e-141 505.4 424 60.6
Sp4g17990 Schrenkiella parvula HOM05D005354 ORTHO05D006315 4.4e-141 505.4 424 60.1
Os10g0507800 Oryza sativa ssp. japonica HOM05D005354 ORTHO05D006315 7.5e-141 504.6 431 58.5
Zm00001eb043970 Zea mays HOM05D005354 ORTHO05D006315 9.9e-141 504.2 431 58.5
Aa31LG9G12210 Aethionema arabicum HOM05D000808 ORTHO05D006315 1.7e-140 503.4 424 59.2
AT2G35720 Arabidopsis thaliana HOM05D005354 ORTHO05D006315 2.2e-140 503.1 424 59.9
Thhalv10016484m.g Eutrema salsugineum HOM05D005354 ORTHO05D006315 2.9e-140 502.7 424 60.1
CARHR129960 Cardamine hirsuta HOM05D005354 ORTHO05D006315 2.4e-139 499.6 424 60.4
Carub.0004s1745 Capsella rubella HOM05D005354 ORTHO05D006315 4.1e-139 498.8 424 60.1
Hund14561 Selenicereus undatus HOM05D005354 ORTHO05D006315 2.7e-138 496.1 377 67.1
Actinidia05204 Actinidia chinensis HOM05D005354 ORTHO05D006315 3.5e-138 495.7 400 64.0
BraA04t18215Z Brassica rapa HOM05D005354 ORTHO05D006315 3.5e-138 495.7 435 57.5
ECA240G4831 Erigeron canadensis HOM05D005354 ORTHO05D006315 3.5e-138 495.7 431 58.0
BcaB06g28865 Brassica carinata HOM05D005354 ORTHO05D006315 1.7e-137 493.4 425 58.6
A04p27170 Brassica napus HOM05D005354 ORTHO05D006315 8.6e-137 491.1 425 57.9
BcaC02g07676 Brassica carinata HOM05D005354 ORTHO05D006315 2.5e-136 489.6 425 57.6
C04p64680 Brassica napus HOM05D005354 ORTHO05D006315 2.5e-136 489.6 425 57.6
BolC4t27945H Brassica oleracea HOM05D005354 ORTHO05D006315 2.5e-136 489.6 425 57.6
DCAR_027776 Daucus carota HOM05D005354 ORTHO05D006315 2.1e-135 486.5 417 59.7
Ca_24575_v3 Cicer arietinum L. HOM05D005354 ORTHO05D006315 1.7e-129 466.8 433 59.8
SHI35069 Sapria himalayana HOM05D005354 ORTHO05D006315 1.2e-125 454.1 431 55.9
Duzib084G0473 Durio zibethinus HOM05D005354 ORTHO05D006315 9.9e-125 451.1 430 56.0
Mapoly0099s0041 Marchantia polymorpha HOM05D005354 ORTHO05D006315 3.3e-112 409.5 437 49.0
Pp3c26_4130 Physcomitrium patens HOM05D005354 ORTHO05D006315 7.4e-112 408.3 439 48.1
SMO172G0088 Selaginella moellendorffii HOM05D005354 ORTHO05D006315 7.1e-99 365.2 433 44.8
Zm00001eb442210 Zea mays HOM05D005354 ORTHO05D006315 1.9e-96 357.1 296 59.1
Pp3c3_14420 Physcomitrium patens HOM05D005354 ORTHO05D006315 3.1e-94 349.7 439 42.6
PGSC0003DMG400004811 Solanum tuberosum HOM05D005354 ORTHO05D006315 5.3e-94 349.0 265 64.2
AUR62007515 Chenopodium quinoa HOM05D005354 ORTHO05D006315 1.2e-90 337.8 805 32.3
AUR62042791 Chenopodium quinoa HOM05D005354 ORTHO05D006315 9.1e-78 295.0 225 64.4
AUR62044247 Chenopodium quinoa HOM05D005354 ORTHO05D006315 4.5e-77 292.7 225 64.0
SMO172G0123 Selaginella moellendorffii HOM05D005354 ORTHO05D006315 3.2e-75 286.6 437 37.3
Migut.E01656 Erythranthe guttata HOM05D005354 ORTHO05D006315 2.6e-72 276.9 224 61.6
HPP92_015106 Vanilla planifolia HOM05D005354 ORTHO05D006315 4.5e-69 266.2 213 62.9
HPP92_015035 Vanilla planifolia HOM05D005354 ORTHO05D006315 1.3e-68 264.6 374 44.9
Cpa.g.sc29.153 Carica papaya HOM05D005354 ORTHO05D006315 3.1e-62 243.4 188 63.8
unitig_8.g3913 Utricularia gibba HOM05D005354 ORTHO05D006315 9.5e-51 205.3 213 52.1
CBR_g27963 Chara braunii HOM05D005354 ORTHO05D006315 3.0e-49 200.3 353 35.4
HPP92_015107 Vanilla planifolia HOM05D005354 ORTHO05D006315 2.2e-47 194.1 159 59.7
Pp3c26_4030 Physcomitrium patens HOM05D005354 ORTHO05D006315 2.0e-40 171.0 200 42.5
AUR62042790 Chenopodium quinoa HOM05D005354 ORTHO05D006315 4.9e-39 166.4 141 61.0
unitig_8.g3912 Utricularia gibba HOM05D005354 ORTHO05D006315 3.2e-38 163.7 143 60.1
CDE12G0732 Ceratophyllum demersum HOM05D005354 ORTHO05D006315 5.4e-38 162.9 207 44.4
CDE12G0753 Ceratophyllum demersum HOM05D005354 ORTHO05D006315 3.5e-29 133.7 105 61.9
AUR62044248 Chenopodium quinoa HOM05D005354 ORTHO05D006315 4.7e-26 123.2 99 65.7
MCO16G272 Micromonas commoda HOM05D005354 ORTHO05D006315 3.1e-25 120.6 383 27.2
Zm00001eb442460 Zea mays HOM05D005354 ORTHO05D006315 8.9e-25 119.0 152 46.1
Zm00001eb442450 Zea mays HOM05D005354 ORTHO05D006315 1.2e-21 108.6 79 63.3
Lsat_1_v5_gn_5_20860 Lactuca sativa HOM05D005354 ORTHO05D006315 1.1e-17 95.5 88 51.1
Cc08_g12460 Coffea canephora HOM05D005354 ORTHO05D006315 2.6e-16 90.9 57 68.4
Cre06.g308150 Chlamydomonas reinhardtii HOM05D005354 ORTHO05D006315 5.8e-16 89.7 314 24.2
PRCOL_00004836 Prasinoderma coloniale HOM05D005354 ORTHO05D006315 7.1e-14 82.8 247 27.9
SEGI_16043 Sequoiadendron giganteum HOM05D005354 ORTHO05D006315 5.3e-09 66.6 58 51.7
Hma1.2p1_0299F.1_g117910 Hydrangea macrophylla HOM05D001579 ORTHO05D003470 2.4e-06 57.8 39 64.1


User provided reference genes

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