Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G030300 Glycine max HOM05D001858 ORTHO05D001838 8.9e-78 293.5 146 100.0
VMungo1215G0826 Vigna mungo HOM05D001858 ORTHO05D001838 4.8e-39 164.9 141 59.6
Lj2g0011219 Lotus japonicus HOM05D001858 ORTHO05D001838 1.4e-33 146.7 147 53.7
Medtr5g011980 Medicago truncatula HOM05D001858 ORTHO05D001838 1.1e-30 137.1 153 50.3
Lalb_Chr09g0324471 Lupinus albus HOM05D001858 ORTHO05D001838 4.1e-30 135.2 149 49.0
TPR.G19708 Trifolium pratense HOM05D001858 ORTHO05D001838 1.3e-28 130.2 140 49.3
Lalb_Chr05g0214611 Lupinus albus HOM05D001858 ORTHO05D001838 1.9e-27 126.3 144 52.8
TPR.G19689 Trifolium pratense HOM05D001858 ORTHO05D001838 2.5e-27 125.9 141 51.1
Psat2g179200 Pisum sativum HOM05D001858 ORTHO05D001838 3.2e-27 125.6 142 48.6
Medtr5g011950 Medicago truncatula HOM05D001858 ORTHO05D001838 7.2e-27 124.4 142 49.3
Phvul.002G060600 Phaseolus vulgaris HOM05D001858 ORTHO05D001838 2.1e-26 122.9 99 64.6
arahy.Tifrunner.gnm1.ann1.XS8ZHY Arachis hypogaea HOM05D001858 ORTHO05D001838 1.0e-25 120.6 147 44.9
TPR.G37687 Trifolium pratense HOM05D001858 ORTHO05D001838 5.1e-25 118.2 148 46.6
Ca_12296_v3 Cicer arietinum L. HOM05D001858 ORTHO05D001838 7.4e-24 114.4 121 49.6
arahy.Tifrunner.gnm1.ann1.AVQ9QZ Arachis hypogaea HOM05D001858 ORTHO05D001838 9.7e-24 114.0 147 41.5
Psat2g179160 Pisum sativum HOM05D001858 ORTHO05D001838 9.7e-24 114.0 141 45.4
Medtr5g011960 Medicago truncatula HOM05D001858 ORTHO05D001838 1.3e-23 113.6 158 43.7
Lalb_Chr16g0389531 Lupinus albus HOM05D001858 ORTHO05D001838 1.7e-23 113.2 151 46.4
arahy.Tifrunner.gnm1.ann1.QHK75C Arachis hypogaea HOM05D001858 ORTHO05D001838 3.7e-23 112.1 152 42.1
Glyma.05G055100 Glycine max HOM05D001858 ORTHO05D001838 4.8e-23 111.7 143 43.4
arahy.Tifrunner.gnm1.ann1.F7W7FE Arachis hypogaea HOM05D001858 ORTHO05D001838 6.3e-23 111.3 152 42.1
Phvul.003G217100 Phaseolus vulgaris HOM05D001858 ORTHO05D001838 8.2e-23 110.9 144 42.4
CANSAT21G1007 Cannabis sativa HOM05D001858 ORTHO05D001838 1.5e-21 106.7 142 43.0
Glyma.17G137300 Glycine max HOM05D001858 ORTHO05D001838 2.0e-21 106.3 141 42.6
VMungo0251G1333 Vigna mungo HOM05D001858 ORTHO05D001838 2.6e-21 105.9 143 41.3
Rhsim10G0211900 Rhododendron simsii HOM05D001858 ORTHO05D001838 1.3e-20 103.6 142 40.8
TAR636G2404 Trochodendron aralioides HOM05D001858 ORTHO05D001838 1.3e-20 103.6 127 43.3
TAR629G0091 Trochodendron aralioides HOM05D001858 ORTHO05D001838 1.7e-20 103.2 137 42.3
QL12p014213 Quercus lobata HOM05D001858 ORTHO05D001838 2.2e-20 102.8 144 41.7
Lj4g0000999 Lotus japonicus HOM05D001858 ORTHO05D001838 3.8e-20 102.1 149 45.6
MD04G1081000 Malus domestica HOM05D001858 ORTHO05D001838 8.5e-20 100.9 144 41.0
PGR042G3218 Punica granatum HOM05D001858 ORTHO05D001838 8.5e-20 100.9 137 41.6
Medtr4g101780 Medicago truncatula HOM05D001858 ORTHO05D001838 2.5e-19 99.4 155 43.2
Psat0s5204g0040 Pisum sativum HOM05D001858 ORTHO05D001838 4.2e-19 98.6 97 48.5
Prupe.5G077100 Prunus persica HOM05D001858 ORTHO05D001838 5.5e-19 98.2 151 41.7
CiPaw.11G149500 Carya illinoinensis HOM05D001858 ORTHO05D001838 1.8e-17 93.2 144 39.6
Cc08_g13090 Coffea canephora HOM05D001858 ORTHO05D001838 1.8e-17 93.2 140 36.4
CsaV3_3G003100 Cucumis sativus L. HOM05D001858 ORTHO05D001838 5.2e-17 91.7 149 36.2
TWI81G0445 Tripterygium wilfordii HOM05D001858 ORTHO05D001838 5.2e-17 91.7 137 36.5
PGR031G3039 Punica granatum HOM05D001858 ORTHO05D001838 8.8e-17 90.9 128 39.8
ClCG10G003060 Citrullus lanatus HOM05D001858 ORTHO05D001838 1.1e-16 90.5 119 41.2
Psat4g069400 Pisum sativum HOM05D001858 ORTHO05D001838 1.5e-16 90.1 110 41.8
Peaxi162Scf00102g01140 Petunia axillaris HOM05D001858 ORTHO05D001838 4.4e-16 88.6 146 35.6
Nitab4.5_0004482g0010 Nicotiana tabacum HOM05D001858 ORTHO05D001838 9.7e-16 87.4 145 33.8
Gohir.D03G160100 Gossypium hirsutum HOM05D001858 ORTHO05D001838 1.7e-15 86.7 150 38.7
Gorai.003G168600 Gossypium raimondii HOM05D001858 ORTHO05D001838 1.7e-15 86.7 150 38.7
Nitab4.5_0010189g0010 Nicotiana tabacum HOM05D001858 ORTHO05D001838 1.7e-15 86.7 149 35.6
Sed0003966 Sechium edule HOM05D001858 ORTHO05D001838 1.7e-15 86.7 118 44.1
PGSC0003DMG400012481 Solanum tuberosum HOM05D001858 ORTHO05D001838 2.8e-15 85.9 138 35.5
TAR629G2117 Trochodendron aralioides HOM05D001858 ORTHO05D001838 2.8e-15 85.9 93 46.2
Cfa012784 Carpinus fangiana HOM05D001858 ORTHO05D001838 4.8e-15 85.1 143 35.0
HanXRQChr02g0049661 Helianthus annuus HOM05D001858 ORTHO05D001838 4.8e-15 85.1 137 39.4
Manes.01G074600 Manihot esculenta HOM05D001858 ORTHO05D001838 6.3e-15 84.7 124 41.1
CAN.G1394.32 Capsicum annuum HOM05D001858 ORTHO05D001838 8.2e-15 84.3 146 33.6
Solyc08g007460.3 Solanum lycopersicum HOM05D001858 ORTHO05D001838 8.2e-15 84.3 148 36.5
Sopen08g003420 Solanum pennellii HOM05D001858 ORTHO05D001838 1.1e-14 84.0 145 36.6
Thecc.03G259300 Theobroma cacao HOM05D001858 ORTHO05D001838 1.1e-14 84.0 134 36.6
Dinv21585 Davidia involucrata HOM05D001858 ORTHO05D001838 1.4e-14 83.6 112 40.2
Solyc08g079250.4 Solanum lycopersicum HOM05D001858 ORTHO05D001838 1.8e-14 83.2 119 38.7
Aqoxy7G00686 Aquilegia oxysepala HOM05D001858 ORTHO05D001838 2.4e-14 82.8 141 36.2
FAN18G0727 Fragaria x ananassa HOM05D001858 ORTHO05D001838 2.4e-14 82.8 142 38.7
PGSC0003DMG400004782 Solanum tuberosum HOM05D001858 ORTHO05D001838 2.4e-14 82.8 146 34.9
Actinidia05177 Actinidia chinensis HOM05D001858 ORTHO05D001838 4.1e-14 82.0 118 38.1
Cpa.g.sc29.112 Carica papaya HOM05D001858 ORTHO05D001838 4.1e-14 82.0 139 37.4
Gohir.A03G014300 Gossypium hirsutum HOM05D001858 ORTHO05D001838 4.1e-14 82.0 147 36.1
Sopen08g027700 Solanum pennellii HOM05D001858 ORTHO05D001838 5.3e-14 81.6 146 34.2
FAN13G1983 Fragaria x ananassa HOM05D001858 ORTHO05D001838 7.0e-14 81.3 148 37.2
FAN08G1163 Fragaria x ananassa HOM05D001858 ORTHO05D001838 9.1e-14 80.9 142 38.0
Peaxi162Scf00051g00001 Petunia axillaris HOM05D001858 ORTHO05D001838 9.1e-14 80.9 152 35.5
MELO3C013976.2 Cucumis melo HOM05D001858 ORTHO05D001838 1.2e-13 80.5 101 40.6
Nn4g26343 Nelumbo nucifera HOM05D001858 ORTHO05D001838 1.2e-13 80.5 135 37.8
RcHm_v2.0_Chr7g0202051 Rosa chinensis HOM05D001858 ORTHO05D001838 1.2e-13 80.5 121 40.5
vmacro00229 Vaccinium macrocarpon HOM05D001858 ORTHO05D001838 1.2e-13 80.5 108 38.9
Actinidia02098 Actinidia chinensis HOM05D001858 ORTHO05D001838 2.0e-13 79.7 143 35.0
Eucgr.D02016 Eucalyptus grandis HOM05D001858 ORTHO05D001838 2.0e-13 79.7 139 36.0
DCAR_004911 Daucus carota HOM05D001858 ORTHO05D001838 3.5e-13 79.0 107 41.1
FvH4_5g00460 Fragaria vesca HOM05D001858 ORTHO05D001838 3.5e-13 79.0 142 37.3
Hma1.2p1_1868F.1_g305930 Hydrangea macrophylla HOM05D001858 ORTHO05D001838 3.5e-13 79.0 109 37.6
Lsat_1_v5_gn_6_2261 Lactuca sativa HOM05D001858 ORTHO05D001838 4.5e-13 78.6 122 37.7
Lj2P210T45 Lonicera japonica HOM05D001858 ORTHO05D001838 4.5e-13 78.6 82 46.3
PSO478G1109 Papaver somniferum HOM05D001858 ORTHO05D001838 5.9e-13 78.2 151 35.1
PSO782G3337 Papaver somniferum HOM05D001858 ORTHO05D001838 5.9e-13 78.2 150 35.3
MD06G1064500 Malus domestica HOM05D001858 ORTHO05D001838 7.7e-13 77.8 139 34.5
COL.COLO4_23894 Corchorus olitorius HOM05D001858 ORTHO05D001838 1.0e-12 77.4 143 33.6
Potri.001G119000 Populus trichocarpa HOM05D001858 ORTHO05D001838 1.0e-12 77.4 145 35.9
Actinidia27437 Actinidia chinensis HOM05D001858 ORTHO05D001838 1.3e-12 77.0 129 38.8
ECA233G2544 Erigeron canadensis HOM05D001858 ORTHO05D001838 1.3e-12 77.0 147 34.7
HanXRQChr13g0393201 Helianthus annuus HOM05D001858 ORTHO05D001838 3.8e-12 75.5 114 40.4
SalBow1G4970 Salvia bowleyana HOM05D001858 ORTHO05D001838 8.5e-12 74.3 127 40.2
DCAR_006808 Daucus carota HOM05D001858 ORTHO05D001838 1.5e-11 73.6 109 36.7
Aa31LG2G330 Aethionema arabicum HOM05D001858 ORTHO05D001838 1.9e-11 73.2 144 30.6
Zm00001eb273530 Zea mays HOM05D001858 ORTHO05D001838 1.9e-11 73.2 147 36.1
MBI04_g32269_MAGBIO Magnolia biondii HOM05D001858 ORTHO05D000880 2.5e-11 72.8 130 35.4
Potri.003G113900 Populus trichocarpa HOM05D001858 ORTHO05D001838 2.5e-11 72.8 148 33.1
DCAR_027812 Daucus carota HOM05D001858 ORTHO05D001838 3.2e-11 72.4 96 39.6
Nitab4.5_0001707g0060 Nicotiana tabacum HOM05D001858 ORTHO05D001838 4.2e-11 72.0 112 35.7
MBI12_g20401_MAGBIO Magnolia biondii HOM05D001858 ORTHO05D001838 5.5e-11 71.6 107 36.4
Manes.02G034500 Manihot esculenta HOM05D001858 ORTHO05D001838 5.5e-11 71.6 129 34.1
Haze_08591 Corylus avellana HOM05D001858 ORTHO05D001838 7.2e-11 71.2 98 37.8
Nn4g26341 Nelumbo nucifera HOM05D001858 ORTHO05D001838 9.4e-11 70.9 118 35.6
Peaxi162Scf00002g00311 Petunia axillaris HOM05D001858 ORTHO05D001838 9.4e-11 70.9 123 37.4
Sabra01G0091900 Salix brachista HOM05D001858 ORTHO05D001838 9.4e-11 70.9 139 35.3
Eucgr.E00466 Eucalyptus grandis HOM05D001858 ORTHO05D001838 1.6e-10 70.1 126 31.7
Nitab4.5_0001816g0220 Nicotiana tabacum HOM05D001858 ORTHO05D001838 2.1e-10 69.7 106 36.8
BcaB07g31360 Brassica carinata HOM05D001858 ORTHO05D001838 2.7e-10 69.3 119 33.6
Nn1g01118 Nelumbo nucifera HOM05D001858 ORTHO05D001838 3.6e-10 68.9 120 37.5
Rhsim07G0103400 Rhododendron simsii HOM05D001858 ORTHO05D001838 3.6e-10 68.9 138 33.3
MBI04_g44361_MAGBIO Magnolia biondii HOM05D001858 ORTHO05D001838 4.7e-10 68.6 118 32.2
Hund11572 Selenicereus undatus HOM05D001858 ORTHO05D001838 6.1e-10 68.2 91 38.5
Thecc.03G059100 Theobroma cacao HOM05D001858 ORTHO05D001838 8.0e-10 67.8 100 36.0
DCAR_008459 Daucus carota HOM05D001858 ORTHO05D001838 1.0e-09 67.4 103 33.0
Peaxi162Scf00131g00142 Petunia axillaris HOM05D001858 ORTHO05D001838 4.0e-09 65.5 111 29.7
Peaxi162Scf00314g00327 Petunia axillaris HOM05D001858 ORTHO05D001838 4.0e-09 65.5 111 29.7
EL10Ac5g12987 Beta vulgaris HOM05D001858 ORTHO05D001838 6.7e-09 64.7 133 30.8
EL10Ac5g12991 Beta vulgaris HOM05D001858 ORTHO05D001838 6.7e-09 64.7 154 31.8
AUR62007456 Chenopodium quinoa HOM05D001858 ORTHO05D001838 6.7e-09 64.7 139 30.9
Zm00001eb225620 Zea mays HOM05D001858 ORTHO05D001838 6.7e-09 64.7 102 37.3
Ah.12g056240 Amaranthus hybridus HOM05D001858 ORTHO05D001838 8.8e-09 64.3 117 31.6
DCAR_006809 Daucus carota HOM05D001858 ORTHO05D001838 8.8e-09 64.3 101 32.7
Peaxi162Scf00319g00511 Petunia axillaris HOM05D001858 ORTHO05D001838 8.8e-09 64.3 97 37.1
Dinv21047 Davidia involucrata HOM05D001858 ORTHO05D001838 1.5e-08 63.5 110 29.1
CSS0005696 Camellia sinensis var. sinensis HOM05D001858 ORTHO05D001838 3.3e-08 62.4 97 38.1
FvH4_5g17510 Fragaria vesca HOM05D001858 ORTHO05D001838 3.3e-08 62.4 121 33.1
Sabra03G0079000 Salix brachista HOM05D001858 ORTHO05D001838 3.3e-08 62.4 140 32.1
HPP92_005350 Vanilla planifolia HOM05D001858 ORTHO05D001838 3.3e-08 62.4 138 32.6
FAN18G4182 Fragaria x ananassa HOM05D001858 ORTHO05D001838 4.4e-08 62.0 121 33.1
Sc07g0009400 Simmondsia chinensis HOM05D001858 ORTHO05D001838 4.4e-08 62.0 149 29.5
AUR62027276 Chenopodium quinoa HOM05D001858 ORTHO05D001838 7.5e-08 61.2 95 36.8
FAN08G3598 Fragaria x ananassa HOM05D001858 ORTHO05D001838 7.5e-08 61.2 121 33.1
MBI04_g47312_MAGBIO Magnolia biondii HOM05D001858 ORTHO05D001838 7.5e-08 61.2 122 32.0
Sabra15G0029700 Salix brachista HOM05D001858 ORTHO05D001838 7.5e-08 61.2 96 33.3
FAN13G2653 Fragaria x ananassa HOM05D001858 ORTHO05D001838 9.7e-08 60.8 121 32.2
Phvul.004G149600 Phaseolus vulgaris HOM05D001858 ORTHO05D001838 9.7e-08 60.8 90 35.6
Ah.02g117210 Amaranthus hybridus HOM05D001858 ORTHO05D001838 1.7e-07 60.1 117 36.8
Duzib068G1400 Durio zibethinus HOM05D001858 ORTHO05D001838 3.7e-07 58.9 78 33.3
PGR083G1638 Punica granatum HOM05D001858 ORTHO05D001838 3.7e-07 58.9 96 36.5
Aa31LG9G10230 Aethionema arabicum HOM05D011913 ORTHO05D014322 4.8e-07 58.5 157 29.9
Thhalv10008878m.g Eutrema salsugineum HOM05D001858 ORTHO05D001838 4.8e-07 58.5 92 39.1
AL2G33300 Arabidopsis lyrata HOM05D001858 ORTHO05D001838 6.3e-07 58.2 136 30.9
Ah.02g128750 Amaranthus hybridus HOM05D000154 ORTHO05D000092 8.2e-07 57.8 100 34.0
Rhsim07G0103500 Rhododendron simsii HOM05D001858 ORTHO05D001838 8.2e-07 57.8 106 32.1
VMungo0464G0752 Vigna mungo HOM05D001858 ORTHO05D001838 8.2e-07 57.8 95 31.6
PGR044G0327 Punica granatum HOM05D001858 ORTHO05D001838 1.1e-06 57.4 81 33.3
Rhsim07G0103200 Rhododendron simsii HOM05D001858 ORTHO05D001838 1.1e-06 57.4 87 34.5
COL.COLO4_28890 Corchorus olitorius HOM05D001858 ORTHO05D001838 1.4e-06 57.0 101 31.7
Peaxi162Scf63006g00001 Petunia axillaris HOM05D001858 ORTHO05D001838 1.4e-06 57.0 76 35.5
Atru.chr9.1400 Acer truncatum HOM05D001858 ORTHO05D001838 2.4e-06 56.2 98 34.7
MBI04_g15075_MAGBIO Magnolia biondii HOM05D000489 ORTHO05D009832 3.1e-06 55.8 105 35.2
MBI04_g47855_MAGBIO Magnolia biondii HOM05D000489 ORTHO05D009832 3.1e-06 55.8 105 35.2
Nn3g16225 Nelumbo nucifera HOM05D008047 ORTHO05D009832 3.1e-06 55.8 98 30.6
Phvul.004G068800 Phaseolus vulgaris HOM05D008047 ORTHO05D009832 3.1e-06 55.8 112 33.0
Psat7g255760 Pisum sativum HOM05D008047 ORTHO05D009832 3.1e-06 55.8 79 36.7
PGR142G2733 Punica granatum HOM05D008047 ORTHO05D009832 3.1e-06 55.8 86 34.9
TPR.G8623 Trifolium pratense HOM05D001858 ORTHO05D001838 3.1e-06 55.8 108 32.4
AUR62017473 Chenopodium quinoa HOM05D001858 ORTHO05D009832 4.1e-06 55.5 101 31.7
SEGI_06211 Sequoiadendron giganteum HOM05D001858 ORTHO05D001838 5.3e-06 55.1 110 32.7
VMungo0464G1119 Vigna mungo HOM05D008047 ORTHO05D009832 7.0e-06 54.7 89 37.1
Ah.02g117200 Amaranthus hybridus HOM05D001858 ORTHO05D001838 9.1e-06 54.3 138 31.2
Gohir.D03G160000 Gossypium hirsutum HOM05D001858 ORTHO05D001838 9.1e-06 54.3 111 29.7


User provided reference genes

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