Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G024900 Glycine max HOM05D004696 ORTHO05D005645 1.2e-106 389.8 199 100.0
Glyma.01G218300 Glycine max HOM05D004696 ORTHO05D005645 3.8e-103 378.3 200 97.5
Glyma.14G125600 Glycine max HOM05D004696 ORTHO05D005645 1.6e-98 362.8 191 97.4
VMungo0331G1167 Vigna mungo HOM05D004696 ORTHO05D005645 1.2e-96 356.7 200 92.0
Phvul.003G045400 Phaseolus vulgaris HOM05D004696 ORTHO05D005645 5.8e-96 354.4 200 91.0
Phvul.010G140500 Phaseolus vulgaris HOM05D004696 ORTHO05D005645 3.9e-92 341.7 200 88.0
Lalb_Chr17g0338851 Lupinus albus HOM05D004696 ORTHO05D005645 8.7e-92 340.5 200 84.5
Lj2g0021207 Lotus japonicus HOM05D004696 ORTHO05D005645 1.8e-89 332.8 197 85.8
Lalb_Chr10g0096421 Lupinus albus HOM05D004696 ORTHO05D005645 1.2e-88 330.1 200 83.0
Lj4g0004970 Lotus japonicus HOM05D004696 ORTHO05D005645 3.4e-88 328.6 197 84.8
Psat7g133720 Pisum sativum HOM05D004696 ORTHO05D005645 9.6e-83 310.5 201 79.6
arahy.Tifrunner.gnm1.ann1.61U0KE Arachis hypogaea HOM05D004696 ORTHO05D005645 9.0e-81 303.9 209 76.6
arahy.Tifrunner.gnm1.ann1.NQRV37 Arachis hypogaea HOM05D004696 ORTHO05D005645 1.3e-79 300.1 209 76.1
arahy.Tifrunner.gnm1.ann1.BY2PXQ Arachis hypogaea HOM05D004696 ORTHO05D005645 2.9e-79 298.9 209 75.6
Psat1g042400 Pisum sativum HOM05D004696 ORTHO05D005645 2.9e-79 298.9 201 77.1
Medtr5g081850 Medicago truncatula HOM05D004696 ORTHO05D005645 4.2e-78 295.0 201 75.6
CsaV3_6G008150 Cucumis sativus L. HOM05D004696 ORTHO05D005645 5.1e-76 288.1 197 74.6
Manes.11G020900 Manihot esculenta HOM05D004696 ORTHO05D005645 1.5e-75 286.6 197 75.6
Manes.03G211700 Manihot esculenta HOM05D004696 ORTHO05D005645 1.9e-75 286.2 197 75.1
CiPaw.02G069300 Carya illinoinensis HOM05D004696 ORTHO05D005645 1.3e-74 283.5 198 75.3
CSS0007787 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 2.8e-74 282.3 198 73.7
Cpa.g.sc146.25 Carica papaya HOM05D004696 ORTHO05D005645 2.4e-73 279.3 198 74.2
Sed0019137 Sechium edule HOM05D004696 ORTHO05D005645 2.4e-73 279.3 199 71.4
Dinv18020 Davidia involucrata HOM05D004696 ORTHO05D005645 5.3e-73 278.1 196 73.0
Dinv29511 Davidia involucrata HOM05D004696 ORTHO05D005645 5.3e-73 278.1 197 73.1
Haze_00771 Corylus avellana HOM05D004696 ORTHO05D005645 1.5e-72 276.6 197 72.1
TPR.G8061 Trifolium pratense HOM05D004696 ORTHO05D005645 3.4e-72 275.4 202 70.3
Cfa015727 Carpinus fangiana HOM05D004696 ORTHO05D005645 7.6e-72 274.2 197 71.6
Ciclev10005920m.g Citrus clementina HOM05D004696 ORTHO05D005645 8.5e-71 270.8 197 70.1
TAR629G2307 Trochodendron aralioides HOM05D004696 ORTHO05D005645 1.4e-70 270.0 196 73.0
Potri.008G206400 Populus trichocarpa HOM05D004696 ORTHO05D005645 4.2e-70 268.5 194 70.6
QL06p014174 Quercus lobata HOM05D004696 ORTHO05D005645 4.2e-70 268.5 207 67.6
Atru.chr4.3144 Acer truncatum HOM05D004696 ORTHO05D005645 9.3e-70 267.3 197 68.5
Aqoxy4G02417 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 1.2e-69 266.9 196 67.9
vmacro08011 Vaccinium macrocarpon HOM05D004696 ORTHO05D005645 1.2e-69 266.9 207 66.7
Sabra02G0114900 Salix brachista HOM05D004696 ORTHO05D005645 3.6e-69 265.4 194 69.6
Actinidia22921 Actinidia chinensis HOM05D004696 ORTHO05D005645 6.1e-69 264.6 194 69.1
Sc17g0002920 Simmondsia chinensis HOM05D004696 ORTHO05D005645 6.1e-69 264.6 201 66.7
Aqoxy5G04183 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 1.0e-68 263.8 196 67.3
CAN.G305.38 Capsicum annuum HOM05D004696 ORTHO05D005645 1.0e-68 263.8 196 68.4
Eucgr.B03956 Eucalyptus grandis HOM05D004696 ORTHO05D005645 1.0e-68 263.8 197 69.5
Potri.010G002100 Populus trichocarpa HOM05D004696 ORTHO05D005645 1.0e-68 263.8 190 70.5
Solyc05g053220.3 Solanum lycopersicum HOM05D004696 ORTHO05D005645 1.3e-68 263.5 196 68.9
Sopen05g031730 Solanum pennellii HOM05D004696 ORTHO05D005645 1.3e-68 263.5 196 68.9
TWI09G0971 Tripterygium wilfordii HOM05D004696 ORTHO05D005645 1.3e-68 263.5 198 68.7
CANSAT78G0332 Cannabis sativa HOM05D004696 ORTHO05D005645 3.0e-68 262.3 198 69.7
TWI73G0566 Tripterygium wilfordii HOM05D004696 ORTHO05D005645 3.9e-68 261.9 198 68.2
PGSC0003DMG400027150 Solanum tuberosum HOM05D004696 ORTHO05D005645 8.7e-68 260.8 196 67.9
PGR031G3538 Punica granatum HOM05D004696 ORTHO05D005645 1.9e-67 259.6 198 69.2
Thecc.04G312600 Theobroma cacao HOM05D004696 ORTHO05D005645 2.5e-67 259.2 198 68.7
Lsat_1_v5_gn_1_39920 Lactuca sativa HOM05D004696 ORTHO05D005645 3.3e-67 258.8 196 65.3
HanXRQChr09g0238571 Helianthus annuus HOM05D004696 ORTHO05D005645 5.7e-67 258.1 196 66.3
Duzib151G0078 Durio zibethinus HOM05D004696 ORTHO05D005645 7.4e-67 257.7 198 67.7
Prupe.1G105700 Prunus persica HOM05D004696 ORTHO05D005645 2.8e-66 255.8 200 67.0
GSVIVG01017685001 Vitis vinifera HOM05D004696 ORTHO05D005645 3.7e-66 255.4 197 67.5
Gorai.005G071900 Gossypium raimondii HOM05D004696 ORTHO05D005645 8.2e-66 254.2 202 66.3
Sabra08G0150400 Salix brachista HOM05D004696 ORTHO05D005645 1.1e-65 253.8 214 63.1
MD07G1065600 Malus domestica HOM05D004696 ORTHO05D005645 1.4e-65 253.4 197 67.0
Ah.06g192450 Amaranthus hybridus HOM05D004696 ORTHO05D005645 1.8e-65 253.1 198 63.6
Gohir.A02G058200 Gossypium hirsutum HOM05D004696 ORTHO05D005645 4.1e-65 251.9 202 66.3
EL10Ac4g08571 Beta vulgaris HOM05D004696 ORTHO05D005645 6.9e-65 251.1 191 67.0
MD16G1136700 Malus domestica HOM05D004696 ORTHO05D005645 6.9e-65 251.1 196 67.3
MSTRG.24614 Avicennia marina HOM05D004696 ORTHO05D005645 9.1e-65 250.8 188 69.1
MD13G1140700 Malus domestica HOM05D004696 ORTHO05D005645 9.1e-65 250.8 197 66.0
Ah.16g105210 Amaranthus hybridus HOM05D004696 ORTHO05D005645 2.0e-64 249.6 198 63.1
Sabra02G0116500 Salix brachista HOM05D004696 ORTHO05D005645 2.0e-64 249.6 214 63.1
FAN07G1680 Fragaria x ananassa HOM05D004696 ORTHO05D005645 2.6e-64 249.2 196 68.4
Gohir.D02G064000 Gossypium hirsutum HOM05D004696 ORTHO05D005645 2.6e-64 249.2 202 65.3
Lsat_1_v5_gn_6_92581 Lactuca sativa HOM05D004696 ORTHO05D005645 3.4e-64 248.8 196 64.8
Migut.N00002 Erythranthe guttata HOM05D004696 ORTHO05D005645 7.7e-64 247.7 195 66.7
FvH4_4g21490 Fragaria vesca HOM05D004696 ORTHO05D005645 7.7e-64 247.7 196 67.3
FAN12G0616 Fragaria x ananassa HOM05D004696 ORTHO05D005645 7.7e-64 247.7 196 67.3
RcHm_v2.0_Chr4g0427441 Rosa chinensis HOM05D004696 ORTHO05D005645 5.0e-63 245.0 197 67.0
arahy.Tifrunner.gnm1.ann1.09FGJA Arachis hypogaea HOM05D004696 ORTHO05D005645 6.5e-63 244.6 198 68.2
Cc00_g15640 Coffea canephora HOM05D004696 ORTHO05D005645 3.2e-62 242.3 209 61.2
Cc03_g00150 Coffea canephora HOM05D004696 ORTHO05D005645 9.4e-62 240.7 209 60.3
MBI03_g01483_MAGBIO Magnolia biondii HOM05D004696 ORTHO05D005645 1.2e-61 240.4 185 66.5
SGA_v2.0_scaffold49G18399 Striga asiatica HOM05D004696 ORTHO05D005645 1.2e-61 240.4 196 67.9
Ca_05928_v3 Cicer arietinum L. HOM05D004696 ORTHO05D005645 3.6e-61 238.8 201 64.7
CDE06G2579 Ceratophyllum demersum HOM05D005139 ORTHO05D006125 6.1e-61 238.0 196 62.8
ECA220G0002 Erigeron canadensis HOM05D004696 ORTHO05D005645 1.0e-60 237.3 184 64.7
AUR62020507 Chenopodium quinoa HOM05D004696 ORTHO05D005645 3.9e-60 235.3 188 63.3
Ca_06214_v3 Cicer arietinum L. HOM05D004696 ORTHO05D005645 8.8e-60 234.2 198 64.1
unitig_8.g2889 Utricularia gibba HOM05D004696 ORTHO05D005645 2.6e-59 232.6 196 62.8
Aqoxy3G02973 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 7.4e-59 231.1 197 62.4
SalBow2G0725 Salvia bowleyana HOM05D001196 ORTHO05D005911 9.7e-59 230.7 184 67.4
Oeu022705.1 Olea europaea HOM05D004696 ORTHO05D005645 3.7e-58 228.8 177 67.2
THA.LOC104827108 Tarenaya hassleriana HOM05D004696 ORTHO05D005645 6.3e-58 228.0 192 58.9
ClCG06G002080 Citrullus lanatus HOM05D004696 ORTHO05D005645 5.3e-57 224.9 197 62.9
Oeu037627.2 Olea europaea HOM05D004696 ORTHO05D005645 1.5e-56 223.4 288 45.8
AUR62015697 Chenopodium quinoa HOM05D004696 ORTHO05D005645 7.7e-56 221.1 182 61.5
Os02g0730500 Oryza sativa ssp. japonica HOM05D004696 ORTHO05D005645 1.3e-55 220.3 201 60.2
PSO782G4648 Papaver somniferum HOM05D004696 ORTHO05D005645 1.3e-55 220.3 189 59.3
PSO832G1751 Papaver somniferum HOM05D004696 ORTHO05D005645 1.7e-55 219.9 199 59.3
AL6G41010 Arabidopsis lyrata HOM05D004696 ORTHO05D005645 2.9e-55 219.2 197 57.9
Nitab4.5_0008086g0030 Nicotiana tabacum HOM05D004696 ORTHO05D005645 5.0e-55 218.4 196 60.7
PSO478G3068 Papaver somniferum HOM05D004696 ORTHO05D005645 5.0e-55 218.4 189 58.7
Zm00001eb189970 Zea mays HOM05D004696 ORTHO05D005645 5.0e-55 218.4 197 57.4
PSO063G5897 Papaver somniferum HOM05D004696 ORTHO05D005645 6.5e-55 218.0 196 58.7
AT5G30495 Arabidopsis thaliana HOM05D004696 ORTHO05D005645 3.2e-54 215.7 196 55.6
Lj6C700T16 Lonicera japonica HOM05D004696 ORTHO05D005645 7.2e-54 214.5 196 59.7
Rhsim04G0248200 Rhododendron simsii HOM05D004696 ORTHO05D005645 1.2e-53 213.8 197 57.4
CARHR185500 Cardamine hirsuta HOM05D004696 ORTHO05D005645 3.6e-53 212.2 193 53.9
Carub.0002s0865 Capsella rubella HOM05D004696 ORTHO05D005645 1.0e-52 210.7 191 58.1
BcaC04g23715 Brassica carinata HOM05D004696 ORTHO05D005645 3.0e-52 209.1 196 55.6
Hma1.2p1_2234F.1_g317690 Hydrangea macrophylla HOM05D004696 ORTHO05D000003 3.9e-52 208.8 263 47.9
AT1G54770 Arabidopsis thaliana HOM05D004696 ORTHO05D005645 6.7e-52 208.0 193 58.0
BcaB04g19639 Brassica carinata HOM05D004696 ORTHO05D005645 2.8e-50 202.6 193 54.9
BolC9t53474H Brassica oleracea HOM05D004696 ORTHO05D005645 7.0e-49 198.0 196 53.6
Sp2g19960 Schrenkiella parvula HOM05D004696 ORTHO05D005645 7.0e-49 198.0 197 53.3
C09p05450 Brassica napus HOM05D004696 ORTHO05D005645 9.1e-49 197.6 196 53.6
A09p05040 Brassica napus HOM05D004696 ORTHO05D005645 1.6e-48 196.8 196 53.6
BraA09t36143Z Brassica rapa HOM05D004696 ORTHO05D005645 1.6e-48 196.8 196 53.6
Thhalv10005420m.g Eutrema salsugineum HOM05D004696 ORTHO05D005645 2.6e-48 196.1 198 55.1
SGA_v2.0_scaffold69G23291 Striga asiatica HOM05D004696 ORTHO05D005645 4.5e-48 195.3 196 57.7
Peaxi162Scf00164g00414 Petunia axillaris HOM05D004696 ORTHO05D005645 1.0e-47 194.1 196 56.6
Aa31LG2G12130 Aethionema arabicum HOM05D004696 ORTHO05D005645 1.3e-47 193.7 196 53.1
Actinidia01063 Actinidia chinensis HOM05D004696 ORTHO05D005645 3.8e-47 192.2 194 56.2
ECA248G3148 Erigeron canadensis HOM05D004696 ORTHO05D005645 1.9e-46 189.9 189 54.5
SHI04008 Sapria himalayana HOM05D004696 ORTHO05D005645 6.7e-44 181.4 161 60.2
Nitab4.5_0000745g0120 Nicotiana tabacum HOM05D004696 ORTHO05D005645 1.5e-43 180.3 196 52.0
Lj4g0014561 Lotus japonicus HOM05D004696 ORTHO05D005645 1.3e-42 177.2 99 87.9
SMO139G0013 Selaginella moellendorffii HOM05D004696 ORTHO05D005645 2.8e-42 176.0 182 51.6
Lj4g0016234 Lotus japonicus HOM05D004696 ORTHO05D005645 6.3e-42 174.9 117 76.9
MELO3C035238.2 Cucumis melo HOM05D004696 ORTHO05D005645 1.4e-41 173.7 166 57.2
Pp3c7_450 Physcomitrium patens HOM05D004696 ORTHO05D005645 5.3e-41 171.8 178 51.1
SEGI_16783 Sequoiadendron giganteum HOM05D004696 ORTHO05D005645 7.0e-41 171.4 173 54.9
SEGI_41631 Sequoiadendron giganteum HOM05D004696 ORTHO05D005645 9.1e-41 171.0 192 51.0
Mapoly0084s0020 Marchantia polymorpha HOM05D004696 ORTHO05D005645 1.6e-40 170.2 178 51.1
Nn3g16891 Nelumbo nucifera HOM05D004696 ORTHO05D005645 1.4e-36 157.1 127 60.6
ECA149G0001 Erigeron canadensis HOM05D004696 ORTHO05D005645 8.3e-34 147.9 192 46.9
CBR_g41139 Chara braunii HOM05D004696 ORTHO05D005645 3.1e-33 146.0 155 45.2
Lj2g0010517 Lotus japonicus HOM05D004696 ORTHO05D005645 2.2e-31 139.8 134 64.2
ATR1127G170 Amborella trichopoda HOM05D004696 ORTHO05D005645 2.1e-29 133.3 118 61.0
HPP92_006011 Vanilla planifolia HOM05D004696 ORTHO05D005645 1.5e-27 127.1 123 51.2
AagrBONN_evm.TU.Sc2ySwM_368.1627 Anthoceros agrestis HOM05D004696 ORTHO05D005645 9.8e-27 124.4 128 49.2
Lj2g0009432 Lotus japonicus HOM05D004696 ORTHO05D005645 9.8e-27 124.4 97 70.1
Zm00001eb253530 Zea mays HOM05D004696 ORTHO05D005645 3.7e-26 122.5 99 63.6
MCO05G434 Micromonas commoda HOM05D004696 ORTHO05D005645 4.9e-26 122.1 191 39.3
CSS0046364 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 7.0e-25 118.2 99 62.6
CSS0022818 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 3.5e-24 115.9 100 61.0
COL.COLO4_34519 Corchorus olitorius HOM05D004696 ORTHO05D005645 1.3e-23 114.0 120 55.0
RcHm_v2.0_Chr4g0427481 Rosa chinensis HOM05D004696 ORTHO05D005645 3.8e-23 112.5 102 57.8
TAR371G0358 Trochodendron aralioides HOM05D004696 ORTHO05D005645 5.0e-23 112.1 102 62.7
PRCOL_00000839 Prasinoderma coloniale HOM05D004696 ORTHO05D005645 8.0e-21 104.8 142 40.1
Cfa024688 Carpinus fangiana HOM05D004696 ORTHO05D005645 3.4e-19 99.4 103 46.6
BcaC04g19932 Brassica carinata HOM05D004696 ORTHO05D005645 2.0e-16 90.1 117 44.4
Cre03.g194150 Chlamydomonas reinhardtii HOM05D004696 ORTHO05D005645 2.7e-16 89.7 164 33.5
BolC9t57816H Brassica oleracea HOM05D004696 ORTHO05D005645 5.9e-16 88.6 117 44.4
Aqoxy5G04095 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 2.5e-14 83.2 82 58.5
Zm00001eb026470 Zea mays HOM05D004696 ORTHO05D021106 1.6e-13 80.5 65 61.5
QL04p080373 Quercus lobata HOM05D000023 ORTHO05D000014 4.0e-12 75.9 45 77.8
BcaB05g22696 Brassica carinata HOM05D004696 ORTHO05D005645 2.6e-11 73.2 113 39.8
Zm00001eb219180 Zea mays HOM05D004696 ORTHO05D005645 2.6e-11 73.2 65 58.5
EL10Ac1g01076 Beta vulgaris HOM05D004696 ORTHO05D005645 3.7e-10 69.3 57 63.2
QL12p004065 Quercus lobata HOM05D004696 ORTHO05D005645 4.9e-10 68.9 66 60.6
Medtr7g074130 Medicago truncatula HOM05D004696 ORTHO05D005645 1.2e-08 64.3 62 54.8
CSS0030909 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 1.5e-06 57.4 99 39.4
QL04p074113 Quercus lobata HOM05D001335 ORTHO05D001184 2.5e-06 56.6 33 75.8


User provided reference genes

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