Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G017800 Glycine max HOM05D005115 ORTHO05D005703 9.1e-105 383.6 202 100.0
Glyma.01G225300 Glycine max HOM05D005115 ORTHO05D005703 4.8e-98 361.3 202 95.0
Phvul.002G164100 Phaseolus vulgaris HOM05D005115 ORTHO05D005703 3.8e-95 351.7 203 91.1
VMungo1215G1874 Vigna mungo HOM05D005115 ORTHO05D005703 4.4e-91 338.2 202 88.1
LjContig00312_ERROPOS870357g0004531 Lotus japonicus HOM05D005115 ORTHO05D005703 9.8e-83 310.5 202 82.7
arahy.Tifrunner.gnm1.ann1.M14U5A Arachis hypogaea HOM05D005115 ORTHO05D005703 1.0e-79 300.4 202 81.2
arahy.Tifrunner.gnm1.ann1.V4I9JE Arachis hypogaea HOM05D005115 ORTHO05D005703 1.3e-79 300.1 202 80.7
Ca_17482_v3 Cicer arietinum L. HOM05D005115 ORTHO05D005703 5.2e-68 261.5 209 69.4
Ca_17506_v3 Cicer arietinum L. HOM05D005115 ORTHO05D005703 5.2e-68 261.5 209 69.4
Medtr8g099425 Medicago truncatula HOM05D005115 ORTHO05D005703 2.2e-66 256.1 209 69.4
TPR.G3414 Trifolium pratense HOM05D005115 ORTHO05D005703 3.2e-65 252.3 206 70.9
Cfa011998 Carpinus fangiana HOM05D005115 ORTHO05D005703 5.6e-62 241.5 205 69.3
Dinv37526 Davidia involucrata HOM05D005115 ORTHO05D005703 9.5e-62 240.7 203 67.5
Duzib068G0330 Durio zibethinus HOM05D005115 ORTHO05D005703 4.7e-61 238.4 204 68.6
CiPaw.11G120600 Carya illinoinensis HOM05D005115 ORTHO05D005703 4.0e-60 235.3 204 67.2
Duzib205G0660 Durio zibethinus HOM05D005115 ORTHO05D005703 4.0e-60 235.3 204 66.2
Gohir.A09G190300 Gossypium hirsutum HOM05D005115 ORTHO05D005703 8.9e-60 234.2 214 65.0
Thecc.03G298900 Theobroma cacao HOM05D005115 ORTHO05D005703 1.5e-59 233.4 206 66.5
Gohir.D09G185000 Gossypium hirsutum HOM05D005115 ORTHO05D005703 2.6e-59 232.6 205 64.9
Gorai.006G207500 Gossypium raimondii HOM05D005115 ORTHO05D005703 8.3e-58 227.6 211 63.0
Cc08_g16140 Coffea canephora HOM05D005115 ORTHO05D005703 1.4e-57 226.9 204 64.7
Solyc08g008350.3 Solanum lycopersicum HOM05D005115 ORTHO05D005703 1.4e-57 226.9 204 64.7
Duzib084G1297 Durio zibethinus HOM05D005115 ORTHO05D005703 3.2e-57 225.7 206 65.0
Prupe.5G120800 Prunus persica HOM05D005115 ORTHO05D005703 5.4e-57 224.9 208 65.9
vmacro11350 Vaccinium macrocarpon HOM05D005115 ORTHO05D005703 7.8e-56 221.1 242 56.6
Peaxi162Scf00102g01844 Petunia axillaris HOM05D005115 ORTHO05D005703 3.0e-55 219.2 204 63.7
Rhsim02G0244500 Rhododendron simsii HOM05D005115 ORTHO05D005703 6.6e-55 218.0 205 63.4
Dinv38826 Davidia involucrata HOM05D007126 ORTHO05D008974 2.5e-54 216.1 200 64.0
TAR375G0477 Trochodendron aralioides HOM05D005115 ORTHO05D005703 7.3e-54 214.5 203 63.1
Cpa.g.sc79.29 Carica papaya HOM05D005115 ORTHO05D005703 1.6e-53 213.4 205 62.9
Nitab4.5_0002231g0060 Nicotiana tabacum HOM05D005115 ORTHO05D005703 2.8e-53 212.6 231 56.7
CiPaw.12G082200 Carya illinoinensis HOM05D005115 ORTHO05D005703 6.2e-53 211.5 205 65.4
TAR375G0257 Trochodendron aralioides HOM05D005115 ORTHO05D005703 1.4e-52 210.3 203 63.1
FAN18G1353 Fragaria x ananassa HOM05D005115 ORTHO05D005703 2.3e-52 209.5 204 61.8
FvH4_5g04680 Fragaria vesca HOM05D005115 ORTHO05D005703 4.0e-52 208.8 204 62.3
FAN13G0546 Fragaria x ananassa HOM05D005115 ORTHO05D005703 4.0e-52 208.8 204 62.3
FAN13G3196 Fragaria x ananassa HOM05D005115 ORTHO05D005703 4.0e-52 208.8 204 62.3
Nn3g19002 Nelumbo nucifera HOM05D005115 ORTHO05D005703 4.0e-52 208.8 205 62.0
Gohir.D11G024900 Gossypium hirsutum HOM05D005115 ORTHO05D005703 5.2e-52 208.4 204 62.7
Gohir.A11G025300 Gossypium hirsutum HOM05D005115 ORTHO05D005703 6.8e-52 208.0 204 62.3
Sed0016945 Sechium edule HOM05D005115 ORTHO05D005703 8.9e-52 207.6 210 62.9
Nitab4.5_0007367g0090 Nicotiana tabacum HOM05D005115 ORTHO05D005703 1.2e-51 207.2 231 55.8
TWI15G1136 Tripterygium wilfordii HOM05D005115 ORTHO05D005703 2.6e-51 206.1 208 63.5
Gorai.007G026700 Gossypium raimondii HOM05D005115 ORTHO05D005703 3.4e-51 205.7 204 61.8
CsaV3_4G006640 Cucumis sativus L. HOM05D005115 ORTHO05D005703 4.4e-51 205.3 212 60.4
Oeu055028.2 Olea europaea HOM05D005115 ORTHO05D005703 4.4e-51 205.3 250 50.4
Haze_09072 Corylus avellana HOM05D005115 ORTHO05D005703 7.6e-51 204.5 302 46.7
Sabra01G0067300 Salix brachista HOM05D005115 ORTHO05D005703 8.3e-50 201.1 201 61.2
ClCG07G011580 Citrullus lanatus HOM05D005115 ORTHO05D005703 4.1e-49 198.7 210 59.5
TWI81G0084 Tripterygium wilfordii HOM05D005115 ORTHO05D005703 5.4e-49 198.4 208 63.0
Sc22g0004980 Simmondsia chinensis HOM05D005115 ORTHO05D005703 1.2e-48 197.2 203 58.6
Potri.001G090900 Populus trichocarpa HOM05D005115 ORTHO05D005703 1.6e-48 196.8 201 60.2
Potri.003G140700 Populus trichocarpa HOM05D005115 ORTHO05D005703 3.0e-47 192.6 201 59.7
Manes.02G009400 Manihot esculenta HOM05D005115 ORTHO05D005703 5.1e-47 191.8 207 59.9
Actinidia22166 Actinidia chinensis HOM05D005115 ORTHO05D005703 1.6e-45 186.8 188 59.6
CANSAT21G0870 Cannabis sativa HOM05D005115 ORTHO05D005703 2.8e-45 186.0 225 56.4
Aqoxy7G00093 Aquilegia oxysepala HOM05D005115 ORTHO05D005703 3.6e-45 185.7 204 60.3
Hma1.2p1_0440F.1_g153350 Hydrangea macrophylla HOM05D005115 ORTHO05D005703 6.2e-45 184.9 224 55.8
SalBow6G1704 Salvia bowleyana HOM05D005115 ORTHO05D005703 4.0e-44 182.2 264 48.1
SalBow8G0540 Salvia bowleyana HOM05D005115 ORTHO05D005703 4.0e-44 182.2 264 48.1
Atru.chr9.1972 Acer truncatum HOM05D005115 ORTHO05D005703 6.8e-44 181.4 240 54.2
Atru.chr9.1986 Acer truncatum HOM05D005115 ORTHO05D005703 6.8e-44 181.4 240 54.2
PGR042G1877 Punica granatum HOM05D005115 ORTHO05D005703 3.4e-43 179.1 202 55.4
RcHm_v2.0_Chr7g0194701 Rosa chinensis HOM05D005115 ORTHO05D005703 3.4e-43 179.1 193 60.6
ECA240G1127 Erigeron canadensis HOM05D005115 ORTHO05D005703 7.6e-43 177.9 208 53.4
Psat7g026000 Pisum sativum HOM05D005115 ORTHO05D005703 2.4e-41 172.9 118 78.8
AUR62010847 Chenopodium quinoa HOM05D000034 ORTHO05D005703 1.6e-40 170.2 203 53.2
ECA240G3401 Erigeron canadensis HOM05D000003 ORTHO05D000004 4.6e-40 168.7 207 53.6
PSO384G2123 Papaver somniferum HOM05D005115 ORTHO05D005703 1.0e-39 167.5 210 56.7
Migut.A00633 Erythranthe guttata HOM05D005115 ORTHO05D005703 3.0e-39 166.0 208 54.3
Hund14216 Selenicereus undatus HOM05D005115 ORTHO05D005703 3.0e-39 166.0 208 52.9
Eucgr.D01748 Eucalyptus grandis HOM05D005115 ORTHO05D005703 3.9e-39 165.6 209 52.2
HanXRQChr03g0083441 Helianthus annuus HOM05D005115 ORTHO05D005703 3.9e-39 165.6 196 56.6
CDE04G3646 Ceratophyllum demersum HOM05D005115 ORTHO05D005703 8.7e-39 164.5 201 54.2
MBI06_g08472_MAGBIO Magnolia biondii HOM05D005115 ORTHO05D005703 3.3e-38 162.5 198 55.6
PSO135G0387 Papaver somniferum HOM05D005115 ORTHO05D005703 3.3e-38 162.5 206 55.3
THA.LOC104815118 Tarenaya hassleriana HOM05D005115 ORTHO05D005703 7.3e-38 161.4 212 53.8
HanXRQChr13g0415351 Helianthus annuus HOM05D005115 ORTHO05D005703 3.6e-37 159.1 165 60.0
Lsat_1_v5_gn_6_83921 Lactuca sativa HOM05D005115 ORTHO05D005703 3.6e-37 159.1 192 54.7
PGR031G1480 Punica granatum HOM05D005115 ORTHO05D005703 4.8e-37 158.7 206 50.5
SGA_v2.0_scaffold144G35858 Striga asiatica HOM05D005474 ORTHO05D006551 4.0e-36 155.6 198 53.5
TAR636G3146 Trochodendron aralioides HOM05D005115 ORTHO05D005703 1.2e-35 154.1 121 71.1
Sed0001802 Sechium edule HOM05D005115 ORTHO05D005703 1.5e-35 153.7 207 54.1
Carub.0006s2972 Capsella rubella HOM05D005115 ORTHO05D005703 3.4e-35 152.5 215 49.3
CAN.G792.37 Capsicum annuum HOM05D005115 ORTHO05D005703 5.8e-35 151.8 119 70.6
MELO3C016298.2 Cucumis melo HOM05D005115 ORTHO05D005703 1.3e-34 150.6 254 45.3
Thhalv10028955m.g Eutrema salsugineum HOM05D005115 ORTHO05D005703 1.7e-34 150.2 220 48.6
EL10Ac5g12921 Beta vulgaris HOM05D005115 ORTHO05D005703 2.9e-34 149.4 256 45.3
BcaC01g04648 Brassica carinata HOM05D005115 ORTHO05D005703 1.4e-33 147.1 214 49.1
AT4G10970 Arabidopsis thaliana HOM05D005115 ORTHO05D005703 1.9e-33 146.7 215 47.9
CARHR255630 Cardamine hirsuta HOM05D005115 ORTHO05D005703 1.9e-33 146.7 223 47.5
PGSC0003DMG400005793 Solanum tuberosum HOM05D005115 ORTHO05D005703 1.9e-33 146.7 119 69.7
Sabra03G0101600 Salix brachista HOM05D000906 ORTHO05D000713 2.4e-33 146.4 291 40.9
GSVIVG01019540001 Vitis vinifera HOM05D005115 ORTHO05D005703 2.4e-33 146.4 118 71.2
Sopen08g004230 Solanum pennellii HOM05D005115 ORTHO05D005703 4.2e-33 145.6 119 68.1
Lalb_Chr05g0211561 Lupinus albus HOM05D005115 ORTHO05D005703 2.7e-32 142.9 107 73.8
BcaB01g02726 Brassica carinata HOM05D005115 ORTHO05D005703 6.0e-32 141.7 212 48.1
AL6G45070 Arabidopsis lyrata HOM05D005115 ORTHO05D005703 1.3e-31 140.6 219 48.4
CSS0002161 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 1.3e-31 140.6 119 68.1
CSS0007380 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 1.3e-31 140.6 119 68.1
MSTRG.25681 Avicennia marina HOM05D005115 ORTHO05D005703 1.7e-31 140.2 118 66.1
C03p35310 Brassica napus HOM05D005115 ORTHO05D005703 6.6e-31 138.3 210 48.1
Sp6g06500 Schrenkiella parvula HOM05D005115 ORTHO05D005703 2.5e-30 136.3 192 51.0
Hund11387 Selenicereus undatus HOM05D005115 ORTHO05D005703 7.3e-30 134.8 311 37.0
HPP92_002918 Vanilla planifolia HOM05D005115 ORTHO05D005703 7.3e-30 134.8 210 46.2
CDE03G0211 Ceratophyllum demersum HOM05D005115 ORTHO05D005703 9.6e-30 134.4 157 54.1
COL.COLO4_10710 Corchorus olitorius HOM05D005115 ORTHO05D005703 1.6e-29 133.7 115 67.8
unitig_0.g2839 Utricularia gibba HOM05D005115 ORTHO05D005703 8.1e-29 131.3 141 56.0
Aa31LG9G11140 Aethionema arabicum HOM05D005115 ORTHO05D005703 2.4e-28 129.8 265 40.0
MBI07_g07104_MAGBIO Magnolia biondii HOM05D005115 ORTHO05D005703 1.2e-27 127.5 177 48.6
AUR62019846 Chenopodium quinoa HOM05D005115 ORTHO05D005703 2.0e-27 126.7 133 57.1
A03p29200 Brassica napus HOM05D005115 ORTHO05D005703 1.3e-26 124.0 235 42.6
MD06G1108200 Malus domestica HOM05D005115 ORTHO05D005703 3.5e-24 115.9 98 66.3
Lj4g0005021 Lotus japonicus HOM05D005115 ORTHO05D005703 4.6e-24 115.5 179 46.9
Os08g0374200 Oryza sativa ssp. japonica HOM05D005115 ORTHO05D005703 1.0e-23 114.4 120 58.3
Zm00001eb178470 Zea mays HOM05D005115 ORTHO05D005703 3.9e-23 112.5 196 44.4
BolC3t15841H Brassica oleracea HOM05D005115 ORTHO05D005703 7.4e-22 108.2 120 55.0
SEGI_32593 Sequoiadendron giganteum HOM05D005115 ORTHO05D005703 9.6e-22 107.8 190 47.4
Zm00001eb042700 Zea mays HOM05D005115 ORTHO05D005703 1.3e-21 107.5 135 51.1
Sp7g21880 Schrenkiella parvula HOM05D005115 ORTHO05D005703 4.8e-21 105.5 200 42.5
SHI06967 Sapria himalayana HOM05D005115 ORTHO05D005703 6.2e-21 105.1 111 56.8
Lalb_Chr05g0211571 Lupinus albus HOM05D005115 ORTHO05D005703 8.1e-21 104.8 89 68.5
Thhalv10026287m.g Eutrema salsugineum HOM05D005115 ORTHO05D005703 2.0e-19 100.1 202 41.6
arahy.Tifrunner.gnm1.ann1.ULQ1VN Arachis hypogaea HOM05D005115 ORTHO05D005703 3.4e-19 99.4 70 75.7
BcaNung01098 Brassica carinata HOM05D005115 ORTHO05D005703 5.8e-19 98.6 205 39.5
AT4G23910 Arabidopsis thaliana HOM05D005115 ORTHO05D005703 7.6e-19 98.2 177 42.9
ATR0602G161 Amborella trichopoda HOM05D005115 ORTHO05D005703 1.9e-17 93.6 268 36.2
A01p15220 Brassica napus HOM05D005115 ORTHO05D005703 4.2e-17 92.4 203 38.9
CSS0029994 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 7.1e-17 91.7 86 59.3
CSS0045410 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 7.1e-17 91.7 86 59.3
AL7G29420 Arabidopsis lyrata HOM05D005115 ORTHO05D005703 1.2e-16 90.9 178 41.6
Carub.0007s1718 Capsella rubella HOM05D005115 ORTHO05D005703 1.2e-16 90.9 199 42.2
Oeu029936.1 Olea europaea HOM05D005115 ORTHO05D005703 3.0e-15 86.3 62 71.0
CARHR231320 Cardamine hirsuta HOM05D005115 ORTHO05D005703 1.1e-14 84.3 122 48.4
DCAR_029907 Daucus carota HOM05D005115 ORTHO05D005703 1.1e-14 84.3 73 71.2
C01p19150 Brassica napus HOM05D005115 ORTHO05D005703 1.6e-13 80.5 120 45.8
BraA01t01460Z Brassica rapa HOM05D005115 ORTHO05D005703 2.1e-13 80.1 119 42.9
BcaC09g50931 Brassica carinata HOM05D005115 ORTHO05D005703 4.8e-13 79.0 120 45.8
BolC1t01841H Brassica oleracea HOM05D005115 ORTHO05D005703 6.2e-13 78.6 120 45.0
Gohir.D12G237999 Gossypium hirsutum HOM05D005115 ORTHO05D005703 8.2e-13 78.2 103 46.6
Gohir.D12G238133 Gossypium hirsutum HOM05D005115 ORTHO05D005703 8.2e-13 78.2 103 46.6
Gorai.008G254900 Gossypium raimondii HOM05D005115 ORTHO05D005703 8.2e-13 78.2 103 46.6
MD06G1108300 Malus domestica HOM05D005115 ORTHO05D005703 5.8e-11 72.0 71 62.0
QL02p030259 Quercus lobata HOM05D005115 ORTHO05D005703 5.0e-10 68.9 85 52.9
Lsat_1_v5_gn_1_118201 Lactuca sativa HOM05D009751 ORTHO05D005703 8.4e-10 68.2 64 56.2
Lsat_1_v5_gn_8_68541 Lactuca sativa HOM05D005115 ORTHO05D018183 5.5e-09 65.5 62 56.5
FAN04G1053 Fragaria x ananassa HOM05D005115 ORTHO05D005703 6.1e-08 62.0 72 51.4
AagrBONN_evm.TU.Sc2ySwM_344.5012 Anthoceros agrestis HOM05D028980 ORTHO05D026613 3.0e-07 59.7 224 32.1
Actinidia04197 Actinidia chinensis HOM05D000749 ORTHO05D004893 3.9e-07 59.3 79 49.4
TAR636G1289 Trochodendron aralioides HOM05D005115 ORTHO05D005703 5.1e-07 58.9 80 47.5


User provided reference genes

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