Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G017600 Glycine max HOM05D004051 ORTHO05D004480 3.0e-35 151.4 80 100.0
Glyma.01G225400 Glycine max HOM05D004051 ORTHO05D004480 1.3e-30 136.0 81 90.1
LjContig00312_ERROPOS870357g0027890 Lotus japonicus HOM05D004051 ORTHO05D004480 1.7e-25 119.0 80 78.8
Phvul.002G164300 Phaseolus vulgaris HOM05D004051 ORTHO05D004480 3.7e-25 117.9 80 76.2
arahy.Tifrunner.gnm1.ann1.T1KBZJ Arachis hypogaea HOM05D004051 ORTHO05D004480 8.2e-25 116.7 79 78.5
Phvul.002G298100 Phaseolus vulgaris HOM05D004051 ORTHO05D004480 1.4e-24 115.9 82 76.8
Lalb_Chr05g0224141 Lupinus albus HOM05D004051 ORTHO05D004480 9.1e-24 113.2 80 75.0
arahy.Tifrunner.gnm1.ann1.E0UY0G Arachis hypogaea HOM05D004051 ORTHO05D004480 2.0e-23 112.1 79 75.9
Gohir.D12G237933 Gossypium hirsutum HOM05D004051 ORTHO05D004480 2.6e-23 111.7 80 72.5
Gorai.008G254600 Gossypium raimondii HOM05D004051 ORTHO05D004480 2.6e-23 111.7 80 72.5
Duzib205G1876 Durio zibethinus HOM05D004051 ORTHO05D004480 4.5e-23 110.9 80 72.5
Psat7g025560 Pisum sativum HOM05D004051 ORTHO05D004480 5.9e-23 110.5 80 73.8
Thecc.03G298400 Theobroma cacao HOM05D004051 ORTHO05D004480 1.3e-22 109.4 80 71.2
Gohir.A12G236600 Gossypium hirsutum HOM05D004051 ORTHO05D004480 2.9e-22 108.2 80 71.2
Prupe.5G120400 Prunus persica HOM05D004051 ORTHO05D004480 3.2e-21 104.8 79 72.2
QL02p030350 Quercus lobata HOM05D004051 ORTHO05D004480 4.2e-21 104.4 80 68.8
TPR.G25572 Trifolium pratense HOM05D004051 ORTHO05D004480 5.5e-21 104.0 80 71.2
Duzib084G0187 Durio zibethinus HOM05D000749 ORTHO05D005685 9.4e-21 103.2 75 70.7
Gohir.D12G237800 Gossypium hirsutum HOM05D004051 ORTHO05D004480 1.2e-20 102.8 75 70.7
TWI81G0780 Tripterygium wilfordii HOM05D004051 ORTHO05D004480 1.2e-20 102.8 80 68.8
arahy.Tifrunner.gnm1.ann1.ZDLG37 Arachis hypogaea HOM05D004051 ORTHO05D004480 2.1e-20 102.1 74 73.0
Manes.02G009700 Manihot esculenta HOM05D004051 ORTHO05D004480 2.1e-20 102.1 77 72.7
PGR042G1109 Punica granatum HOM05D004051 ORTHO05D004480 2.7e-20 101.7 80 67.5
VMungo0251G1927 Vigna mungo HOM05D000749 ORTHO05D005685 4.7e-20 100.9 76 73.7
HanXRQChr03g0083481 Helianthus annuus HOM05D004051 ORTHO05D004480 7.9e-20 100.1 78 64.1
Lj4g0013283 Lotus japonicus HOM05D004051 ORTHO05D004480 7.9e-20 100.1 75 70.7
MD06G1107300 Malus domestica HOM05D004051 ORTHO05D004480 7.9e-20 100.1 77 66.2
Medtr8g099465 Medicago truncatula HOM05D004051 ORTHO05D004480 1.0e-19 99.8 69 73.9
Dinv37531 Davidia involucrata HOM05D004051 ORTHO05D004480 2.3e-19 98.6 81 65.4
FvH4_5g04640 Fragaria vesca HOM05D004051 ORTHO05D004480 3.9e-19 97.8 77 67.5
FAN18G0508 Fragaria x ananassa HOM05D004051 ORTHO05D004480 3.9e-19 97.8 77 67.5
CiPaw.11G121000 Carya illinoinensis HOM05D004051 ORTHO05D004480 6.7e-19 97.1 80 63.8
Eucgr.E00869 Eucalyptus grandis HOM05D004051 ORTHO05D004480 6.7e-19 97.1 80 66.2
THA.LOC104815090 Tarenaya hassleriana HOM05D004051 ORTHO05D004480 6.7e-19 97.1 85 64.7
Oeu063517.1 Olea europaea HOM05D004051 ORTHO05D004480 8.8e-19 96.7 79 65.8
Atru.chr9.1978 Acer truncatum HOM05D004051 ORTHO05D004480 1.1e-18 96.3 75 70.7
Atru.chr9.1993 Acer truncatum HOM05D004051 ORTHO05D004480 1.1e-18 96.3 75 70.7
MD06G1107200 Malus domestica HOM05D004051 ORTHO05D004480 1.1e-18 96.3 78 62.8
RcHm_v2.0_Chr7g0194731 Rosa chinensis HOM05D004051 ORTHO05D004480 1.5e-18 95.9 77 67.5
TAR629G1304 Trochodendron aralioides HOM05D004051 ORTHO05D004480 2.0e-18 95.5 82 62.2
CSS0008906 Camellia sinensis var. sinensis HOM05D004051 ORTHO05D004480 4.4e-18 94.4 78 62.8
FAN08G0063 Fragaria x ananassa HOM05D004051 ORTHO05D004480 4.4e-18 94.4 77 66.2
PSO063G6907 Papaver somniferum HOM05D004051 ORTHO05D004480 4.4e-18 94.4 80 63.8
TWI15G0384 Tripterygium wilfordii HOM05D004051 ORTHO05D004480 4.4e-18 94.4 80 65.0
Dinv38829 Davidia involucrata HOM05D004051 ORTHO05D004480 5.7e-18 94.0 81 63.0
Nn1g01872 Nelumbo nucifera HOM05D004051 ORTHO05D004480 7.4e-18 93.6 85 60.0
COL.COLO4_10706 Corchorus olitorius HOM05D004051 ORTHO05D004480 9.7e-18 93.2 76 65.8
FAN13G0943 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.3e-17 92.8 79 63.3
Potri.003G140300 Populus trichocarpa HOM05D004051 ORTHO05D004480 1.3e-17 92.8 78 66.7
FAN18G2387 Fragaria x ananassa HOM05D004051 ORTHO05D004480 3.7e-17 91.3 74 66.2
Actinidia22162 Actinidia chinensis HOM05D004051 ORTHO05D004480 6.3e-17 90.5 78 61.5
Migut.A00641 Erythranthe guttata HOM05D004051 ORTHO05D004480 8.2e-17 90.1 86 58.1
Oeu054023.1 Olea europaea HOM05D004051 ORTHO05D004480 8.2e-17 90.1 72 69.4
GSVIVG01019535001 Vitis vinifera HOM05D004051 ORTHO05D004480 8.2e-17 90.1 85 67.1
vmacro11468 Vaccinium macrocarpon HOM05D004051 ORTHO05D004480 1.1e-16 89.7 76 63.2
CANSAT21G2574 Cannabis sativa HOM05D004051 ORTHO05D004480 2.4e-16 88.6 80 61.2
ECA240G0536 Erigeron canadensis HOM05D004051 ORTHO05D004480 2.4e-16 88.6 80 58.8
Gohir.D08G104000 Gossypium hirsutum HOM05D004051 ORTHO05D004480 3.1e-16 88.2 91 61.5
Sed0004965 Sechium edule HOM05D004051 ORTHO05D004480 3.1e-16 88.2 77 59.7
Nn3g19011 Nelumbo nucifera HOM05D004051 ORTHO05D004480 4.1e-16 87.8 80 60.0
Aa31LG6G7140 Aethionema arabicum HOM05D004051 ORTHO05D004480 7.0e-16 87.0 80 63.8
CSS0023187 Camellia sinensis var. sinensis HOM05D004051 ORTHO05D004480 7.0e-16 87.0 81 58.0
Gorai.004G111400 Gossypium raimondii HOM05D004051 ORTHO05D004480 7.0e-16 87.0 91 61.5
Cc08_g16090 Coffea canephora HOM05D004051 ORTHO05D004480 9.1e-16 86.7 80 62.5
Gohir.A08G096024 Gossypium hirsutum HOM05D004051 ORTHO05D004480 9.1e-16 86.7 91 61.5
Ciclev10023430m.g Citrus clementina HOM05D004051 ORTHO05D004480 2.0e-15 85.5 77 63.6
Sp7g21840 Schrenkiella parvula HOM05D004051 ORTHO05D004480 2.6e-15 85.1 77 59.7
EL10Ac5g12918 Beta vulgaris HOM05D004051 ORTHO05D004480 3.5e-15 84.7 77 64.9
CARHR231280 Cardamine hirsuta HOM05D004051 ORTHO05D004480 3.5e-15 84.7 77 58.4
BcaNung01095 Brassica carinata HOM05D004051 ORTHO05D004480 1.0e-14 83.2 77 57.1
BcaNung04241 Brassica carinata HOM05D004051 ORTHO05D004480 1.7e-14 82.4 73 60.3
Sabra03G0101300 Salix brachista HOM05D004051 ORTHO05D004480 1.7e-14 82.4 91 59.3
Solyc08g008330.3 Solanum lycopersicum HOM05D004051 ORTHO05D004480 1.7e-14 82.4 80 58.8
Sopen08g004210 Solanum pennellii HOM05D004051 ORTHO05D004480 1.7e-14 82.4 80 58.8
Actinidia04200 Actinidia chinensis HOM05D004051 ORTHO05D004480 2.2e-14 82.0 78 57.7
Sopen08g030650 Solanum pennellii HOM05D004051 ORTHO05D004480 2.2e-14 82.0 81 59.3
Thecc.03G195700 Theobroma cacao HOM05D004051 ORTHO05D004480 2.2e-14 82.0 89 58.4
Thhalv10026982m.g Eutrema salsugineum HOM05D004051 ORTHO05D004480 2.9e-14 81.6 77 55.8
Rhsim09G0205000 Rhododendron simsii HOM05D004051 ORTHO05D004480 2.9e-14 81.6 79 58.2
SalBow1G7115 Salvia bowleyana HOM05D004051 ORTHO05D004480 2.9e-14 81.6 78 59.0
Dinv29295 Davidia involucrata HOM05D004051 ORTHO05D004480 3.8e-14 81.3 82 57.3
Peaxi162Scf00102g01842 Petunia axillaris HOM05D004051 ORTHO05D004480 3.8e-14 81.3 79 58.2
SalBow1G2120 Salvia bowleyana HOM05D004051 ORTHO05D004480 5.0e-14 80.9 78 57.7
Hma1.2p1_1461F.1_g285050 Hydrangea macrophylla HOM05D004051 ORTHO05D004480 6.5e-14 80.5 77 58.4
Hma1.2p1_2808F.1_g328863 Hydrangea macrophylla HOM05D004051 ORTHO05D004480 6.5e-14 80.5 77 58.4
Hund14219 Selenicereus undatus HOM05D004051 ORTHO05D004480 6.5e-14 80.5 77 63.6
AL7G29460 Arabidopsis lyrata HOM05D004051 ORTHO05D004480 8.5e-14 80.1 77 57.1
Ca_17505_v3 Cicer arietinum L. HOM05D000749 ORTHO05D005685 8.5e-14 80.1 75 60.0
SGA_v2.0_scaffold96G29014 Striga asiatica HOM05D004051 ORTHO05D004480 1.1e-13 79.7 80 57.5
CiPaw.05G252200 Carya illinoinensis HOM05D004051 ORTHO05D004480 1.5e-13 79.3 82 57.3
QL09p009613 Quercus lobata HOM05D004051 ORTHO05D004480 1.5e-13 79.3 81 59.3
Manes.06G159300 Manihot esculenta HOM05D004051 ORTHO05D004480 1.9e-13 79.0 82 57.3
Solyc08g082390.3 Solanum lycopersicum HOM05D004051 ORTHO05D004480 2.5e-13 78.6 81 58.0
BcaC09g50935 Brassica carinata HOM05D004051 ORTHO05D004480 3.2e-13 78.2 78 55.1
CDE02G2345 Ceratophyllum demersum HOM05D004051 ORTHO05D004480 3.2e-13 78.2 78 59.0
CDE09G0659 Ceratophyllum demersum HOM05D004051 ORTHO05D004480 3.2e-13 78.2 84 54.8
ClCG01G001670 Citrullus lanatus HOM05D004051 ORTHO05D004480 3.2e-13 78.2 87 56.3
Potri.012G011600 Populus trichocarpa HOM05D004051 ORTHO05D004480 3.2e-13 78.2 85 56.5
PGSC0003DMG400012279 Solanum tuberosum HOM05D004051 ORTHO05D004480 3.2e-13 78.2 82 57.3
HPP92_020160 Vanilla planifolia HOM05D004051 ORTHO05D004480 4.2e-13 77.8 101 51.5
DCAR_006488 Daucus carota HOM05D004051 ORTHO05D004480 5.5e-13 77.4 72 55.6
A01p15190 Brassica napus HOM05D004051 ORTHO05D004480 7.2e-13 77.0 79 55.7
CiPaw.05G255100 Carya illinoinensis HOM05D004051 ORTHO05D004480 7.2e-13 77.0 82 56.1
AUR62010843 Chenopodium quinoa HOM05D004051 ORTHO05D004480 7.2e-13 77.0 78 60.3
DCAR_010606 Daucus carota HOM05D004051 ORTHO05D004480 7.2e-13 77.0 80 57.5
HanXRQChr13g0415281 Helianthus annuus HOM05D004051 ORTHO05D004480 7.2e-13 77.0 77 55.8
BcaNung04081 Brassica carinata HOM05D004051 ORTHO05D004480 9.4e-13 76.6 78 55.1
PGR042G3499 Punica granatum HOM05D004051 ORTHO05D004480 9.4e-13 76.6 87 49.4
Ah.07g197450 Amaranthus hybridus HOM05D004051 ORTHO05D004480 1.2e-12 76.3 76 57.9
C07p53180 Brassica napus HOM05D004051 ORTHO05D004480 1.2e-12 76.3 71 57.7
Actinidia03163 Actinidia chinensis HOM05D004051 ORTHO05D004480 1.6e-12 75.9 81 55.6
BraA01t01457Z Brassica rapa HOM05D004051 ORTHO05D004480 1.6e-12 75.9 79 54.4
Carub.0007s1723 Capsella rubella HOM05D004051 ORTHO05D004480 1.6e-12 75.9 77 58.4
AT4G23885 Arabidopsis thaliana HOM05D004051 ORTHO05D004480 2.1e-12 75.5 77 55.8
BraA03t14549Z Brassica rapa HOM05D004051 ORTHO05D004480 2.7e-12 75.1 70 58.6
PGSC0003DMG400005791 Solanum tuberosum HOM05D004051 ORTHO05D004480 3.6e-12 74.7 77 55.8
CiPaw.05G255500 Carya illinoinensis HOM05D004051 ORTHO05D004480 4.7e-12 74.3 82 54.9
A03p54820 Brassica napus HOM05D004051 ORTHO05D004480 6.1e-12 73.9 70 57.1
Sed0007169 Sechium edule HOM05D004051 ORTHO05D004480 8.0e-12 73.6 85 55.3
unitig_88.g27640 Utricularia gibba HOM05D004051 ORTHO05D004480 8.0e-12 73.6 76 56.6
C01p19120 Brassica napus HOM05D004051 ORTHO05D004480 1.0e-11 73.2 78 52.6
AUR62019374 Chenopodium quinoa HOM05D004051 ORTHO05D004480 1.0e-11 73.2 80 52.5
Ciclev10006352m.g Citrus clementina HOM05D004051 ORTHO05D004480 1.4e-11 72.8 75 54.7
Sc13g0009750 Simmondsia chinensis HOM05D004051 ORTHO05D004480 1.4e-11 72.8 76 57.9
GSVIVG01038715001 Vitis vinifera HOM05D004051 ORTHO05D004480 1.4e-11 72.8 75 58.7
ClCG01G000480 Citrullus lanatus HOM05D004051 ORTHO05D004480 1.8e-11 72.4 80 52.5
Hund04853 Selenicereus undatus HOM05D004051 ORTHO05D004480 1.8e-11 72.4 79 57.0
Sc01g0010310 Simmondsia chinensis HOM05D004051 ORTHO05D004480 3.0e-11 71.6 81 58.0
FAN01G1391 Fragaria x ananassa HOM05D004051 ORTHO05D004480 4.0e-11 71.2 80 55.0
MD01G1219400 Malus domestica HOM05D004051 ORTHO05D004480 4.0e-11 71.2 78 57.7
Hund11389 Selenicereus undatus HOM05D004051 ORTHO05D004480 4.0e-11 71.2 77 55.8
BolC1t01838H Brassica oleracea HOM05D004051 ORTHO05D004480 5.2e-11 70.9 76 51.3
CsaV3_5G001830 Cucumis sativus L. HOM05D000749 ORTHO05D005685 5.2e-11 70.9 91 52.7
Sp2g23150 Schrenkiella parvula HOM05D004051 ORTHO05D004480 5.2e-11 70.9 78 55.1
Sed0015186 Sechium edule HOM05D004051 ORTHO05D004480 5.2e-11 70.9 76 57.9
FvH4_7g31780 Fragaria vesca HOM05D004051 ORTHO05D004480 6.7e-11 70.5 80 55.0
RcHm_v2.0_Chr1g0381011 Rosa chinensis HOM05D004051 ORTHO05D004480 6.7e-11 70.5 80 55.0
Atru.chr1.148 Acer truncatum HOM05D004051 ORTHO05D004480 1.5e-10 69.3 76 53.9
BcaB07g29898 Brassica carinata HOM05D004051 ORTHO05D004480 1.5e-10 69.3 81 56.8
MELO3C005880.2 Cucumis melo HOM05D004051 ORTHO05D004480 1.5e-10 69.3 82 53.7
Haze_09066 Corylus avellana HOM05D004051 ORTHO05D004480 2.0e-10 68.9 57 64.9
FAN10G1914 Fragaria x ananassa HOM05D004051 ORTHO05D004480 3.3e-10 68.2 88 50.0
FAN10G0142 Fragaria x ananassa HOM05D004051 ORTHO05D004480 4.4e-10 67.8 80 53.8
AL6G35560 Arabidopsis lyrata HOM05D004051 ORTHO05D004480 5.7e-10 67.4 73 53.4
BcaNung01808 Brassica carinata HOM05D004051 ORTHO05D004480 5.7e-10 67.4 81 54.3
MBI06_g08462_MAGBIO Magnolia biondii HOM05D004051 ORTHO05D004480 5.7e-10 67.4 86 47.7
Thhalv10005218m.g Eutrema salsugineum HOM05D004051 ORTHO05D004480 9.7e-10 66.6 81 55.6
FAN13G0743 Fragaria x ananassa HOM05D004051 ORTHO05D004480 9.7e-10 66.6 71 50.7
HPP92_020177 Vanilla planifolia HOM05D004051 ORTHO05D004480 9.7e-10 66.6 95 48.4
Ah.12g052570 Amaranthus hybridus HOM05D000749 ORTHO05D005685 1.3e-09 66.2 77 57.1
Carub.0006s2191 Capsella rubella HOM05D004051 ORTHO05D004480 1.3e-09 66.2 73 53.4
A02p40750 Brassica napus HOM05D004051 ORTHO05D004480 1.7e-09 65.9 81 51.9
FAN03G1224 Fragaria x ananassa HOM05D004051 ORTHO05D004480 3.7e-09 64.7 78 52.6
AT5G24165 Arabidopsis thaliana HOM05D004051 ORTHO05D004480 4.8e-09 64.3 76 52.6
CARHR189350 Cardamine hirsuta HOM05D004051 ORTHO05D004480 4.8e-09 64.3 73 52.1
AagrBONN_evm.TU.Sc2ySwM_369.239 Anthoceros agrestis HOM05D004051 ORTHO05D004480 8.2e-09 63.5 80 43.8
EL10Ac3g05304 Beta vulgaris HOM05D004051 ORTHO05D004480 1.8e-08 62.4 78 50.0
BcaNung01214 Brassica carinata HOM05D004051 ORTHO05D004480 2.4e-08 62.0 81 53.1
C07p43550 Brassica napus HOM05D004051 ORTHO05D004480 3.1e-08 61.6 81 51.9
Lj2A167G43 Lonicera japonica HOM05D004051 ORTHO05D004480 3.1e-08 61.6 55 63.6
Aa31LG11G3430 Aethionema arabicum HOM05D004051 ORTHO05D004480 2.0e-07 58.9 78 51.3
BolC7t44882H Brassica oleracea HOM05D004051 ORTHO05D004480 2.7e-07 58.5 79 50.6
THA.LOC104821369 Tarenaya hassleriana HOM05D004051 ORTHO05D004480 7.7e-07 57.0 84 44.0
Aqoxy7G00101 Aquilegia oxysepala HOM05D002868 ORTHO05D023304 5.0e-06 54.3 60 53.3


User provided reference genes

Program Settings