Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G017400 Glycine max HOM05D007590 ORTHO05D007875 2.9e-46 188.3 105 100.0
Glyma.01G225600 Glycine max HOM05D007590 ORTHO05D007875 1.2e-31 139.8 105 74.3
Phvul.002G164500 Phaseolus vulgaris HOM05D007590 ORTHO05D007875 4.2e-21 104.8 105 60.0
TPR.G25602 Trifolium pratense HOM05D007590 ORTHO05D007875 1.2e-20 103.2 105 53.3
Medtr5g009260 Medicago truncatula HOM05D007590 ORTHO05D007875 4.7e-20 101.3 104 56.7
Ca_24513_v3 Cicer arietinum L. HOM05D007590 ORTHO05D007875 5.2e-19 97.8 106 57.5
Ca_29733_v3 Cicer arietinum L. HOM05D007590 ORTHO05D007875 5.2e-19 97.8 106 57.5
Lalb_Chr05g0211541 Lupinus albus HOM05D007590 ORTHO05D007875 5.2e-19 97.8 115 50.4
LjContig00312_ERROPOS870357g0000452 Lotus japonicus HOM05D007590 ORTHO05D007875 6.8e-19 97.4 117 52.1
CiPaw.11G121300 Carya illinoinensis HOM05D007590 ORTHO05D007875 2.7e-15 85.5 105 54.3
Nn1g01873 Nelumbo nucifera HOM05D007590 ORTHO05D007875 7.7e-15 84.0 108 47.2
CiPaw.12G082900 Carya illinoinensis HOM05D007590 ORTHO05D007875 1.0e-14 83.6 114 48.2
TAR374G1746 Trochodendron aralioides HOM05D007590 ORTHO05D007875 8.5e-14 80.5 108 50.0
TAR636G1032 Trochodendron aralioides HOM05D007590 ORTHO05D007875 1.9e-13 79.3 104 49.0
Rhsim02G0243500 Rhododendron simsii HOM05D007590 ORTHO05D007875 2.5e-13 79.0 116 43.1
Hma1.2p1_1746F.1_g300410 Hydrangea macrophylla HOM05D007590 ORTHO05D007875 3.2e-13 78.6 116 45.7
TAR629G1835 Trochodendron aralioides HOM05D007590 ORTHO05D007875 3.2e-13 78.6 105 46.7
AUR62019841 Chenopodium quinoa HOM05D007590 ORTHO05D007875 5.5e-13 77.8 104 45.2
Sed0026863 Sechium edule HOM05D007590 ORTHO05D007875 5.5e-13 77.8 111 42.3
AUR62010841 Chenopodium quinoa HOM05D007590 ORTHO05D007875 9.5e-13 77.0 105 45.7
TAR629G2201 Trochodendron aralioides HOM05D007590 ORTHO05D007875 1.2e-12 76.6 110 51.8
Aqoxy5G04230 Aquilegia oxysepala HOM05D007590 ORTHO05D007875 2.1e-12 75.9 109 42.2
CsaV3_4G006590 Cucumis sativus L. HOM05D007590 ORTHO05D007875 2.1e-12 75.9 104 51.9
TAR375G1006 Trochodendron aralioides HOM05D007590 ORTHO05D007875 2.1e-12 75.9 105 45.7
Prupe.5G120200 Prunus persica HOM05D007590 ORTHO05D007875 2.7e-12 75.5 116 42.2
Dinv38831 Davidia involucrata HOM05D005474 ORTHO05D006551 6.1e-12 74.3 107 43.9
CSS0045762 Camellia sinensis var. sinensis HOM05D007590 ORTHO05D007875 8.0e-12 73.9 73 57.5
QL02p030422 Quercus lobata HOM05D007590 ORTHO05D007875 8.0e-12 73.9 117 47.9
RcHm_v2.0_Chr7g0194781 Rosa chinensis HOM05D007590 ORTHO05D007875 8.0e-12 73.9 110 43.6
FAN08G0943 Fragaria x ananassa HOM05D007590 ORTHO05D007875 1.0e-11 73.6 109 48.6
Nn3g19015 Nelumbo nucifera HOM05D007590 ORTHO05D007875 1.0e-11 73.6 110 41.8
Ah.12g052560 Amaranthus hybridus HOM05D007590 ORTHO05D007875 1.4e-11 73.2 115 39.1
FAN13G0413 Fragaria x ananassa HOM05D007590 ORTHO05D007875 1.8e-11 72.8 111 47.7
MELO3C016294.2 Cucumis melo HOM05D007590 ORTHO05D007875 4.0e-11 71.6 105 50.5
Peaxi162Scf00102g00178 Petunia axillaris HOM05D007590 ORTHO05D007875 4.0e-11 71.6 107 43.9
Sed0003477 Sechium edule HOM05D007590 ORTHO05D007875 4.0e-11 71.6 100 49.0
EL10Ac5g12916 Beta vulgaris HOM05D007590 ORTHO05D007875 6.8e-11 70.9 72 54.2
FAN04G0970 Fragaria x ananassa HOM05D007590 ORTHO05D007875 6.8e-11 70.9 109 48.6
Sopen08g030630 Solanum pennellii HOM05D007590 ORTHO05D007875 6.8e-11 70.9 104 46.2
Manes.02G009900 Manihot esculenta HOM05D007590 ORTHO05D007875 1.2e-10 70.1 74 56.8
Solyc08g082370.1 Solanum lycopersicum HOM05D007590 ORTHO05D007875 1.2e-10 70.1 104 45.2
DCAR_006487 Daucus carota HOM05D007590 ORTHO05D007875 1.5e-10 69.7 116 44.0
Cfa012011 Carpinus fangiana HOM05D007590 ORTHO05D007875 2.0e-10 69.3 74 52.7
Potri.001G091500 Populus trichocarpa HOM05D007590 ORTHO05D007875 2.0e-10 69.3 72 54.2
CDE10G0175 Ceratophyllum demersum HOM05D007590 ORTHO05D007875 2.6e-10 68.9 100 42.0
Manes.02G010000 Manihot esculenta HOM05D007590 ORTHO05D007875 2.6e-10 68.9 116 39.7
CiPaw.12G082700 Carya illinoinensis HOM05D007590 ORTHO05D007875 4.4e-10 68.2 102 43.1
ClCG07G011620 Citrullus lanatus HOM05D007590 ORTHO05D007875 4.4e-10 68.2 67 55.2
PGSC0003DMG400012280 Solanum tuberosum HOM05D007590 ORTHO05D007875 4.4e-10 68.2 104 43.3
Gohir.D12G237700 Gossypium hirsutum HOM05D007590 ORTHO05D007875 5.7e-10 67.8 107 40.2
Gohir.D12G237966 Gossypium hirsutum HOM05D007590 ORTHO05D007875 5.7e-10 67.8 107 40.2
Gorai.008G254500 Gossypium raimondii HOM05D007590 ORTHO05D007875 5.7e-10 67.8 107 40.2
Sabra03G0101100 Salix brachista HOM05D007590 ORTHO05D007875 7.5e-10 67.4 112 40.2
MBI06_g08455_MAGBIO Magnolia biondii HOM05D007590 ORTHO05D007875 1.3e-09 66.6 112 44.6
Actinidia22161 Actinidia chinensis HOM05D007590 ORTHO05D007875 2.2e-09 65.9 101 43.6
Cpa.g.sc79.34 Carica papaya HOM05D007590 ORTHO05D007875 2.2e-09 65.9 115 35.7
Potri.003G140100 Populus trichocarpa HOM05D007590 ORTHO05D007875 2.2e-09 65.9 112 40.2
Sopen08g004200 Solanum pennellii HOM05D007590 ORTHO05D007875 3.7e-09 65.1 112 41.1
MSTRG.11924 Avicennia marina HOM05D007590 ORTHO05D007875 4.9e-09 64.7 106 40.6
Manes.01G049200 Manihot esculenta HOM05D007590 ORTHO05D007875 4.9e-09 64.7 99 44.4
TWI60G0225 Tripterygium wilfordii HOM05D007590 ORTHO05D007875 6.3e-09 64.3 113 38.9
Cc08_g16080 Coffea canephora HOM05D007590 ORTHO05D007875 8.3e-09 63.9 114 38.6
Gohir.A12G236500 Gossypium hirsutum HOM05D007590 ORTHO05D007875 8.3e-09 63.9 70 50.0
MSTRG.25673 Avicennia marina HOM05D007590 ORTHO05D007875 1.1e-08 63.5 107 37.4
CDE10G0927 Ceratophyllum demersum HOM05D007590 ORTHO05D007875 1.4e-08 63.2 100 38.0
Peaxi162Scf00074g00097 Petunia axillaris HOM05D007590 ORTHO05D007875 1.4e-08 63.2 73 49.3
Sabra01G0067900 Salix brachista HOM05D007590 ORTHO05D007875 1.8e-08 62.8 72 48.6
Thhalv10023875m.g Eutrema salsugineum HOM05D010600 ORTHO05D007875 5.4e-08 61.2 116 31.0
Thecc.03G298200 Theobroma cacao HOM05D007590 ORTHO05D007875 7.0e-08 60.8 117 36.8
PGSC0003DMG400005790 Solanum tuberosum HOM05D007590 ORTHO05D007875 9.2e-08 60.5 112 40.2
Duzib068G0902 Durio zibethinus HOM05D007590 ORTHO05D007875 1.6e-07 59.7 78 48.7
Lsat_1_v5_gn_6_83961 Lactuca sativa HOM05D007590 ORTHO05D007875 1.6e-07 59.7 106 41.5
Lsat_1_v5_gn_3_10720 Lactuca sativa HOM05D007590 ORTHO05D007875 2.7e-07 58.9 71 49.3
Duzib084G0874 Durio zibethinus HOM05D007590 ORTHO05D007875 4.5e-07 58.2 105 38.1
Duzib205G1174 Durio zibethinus HOM05D007590 ORTHO05D007875 4.5e-07 58.2 109 37.6
HanXRQChr03g0083501 Helianthus annuus HOM05D007590 ORTHO05D007875 4.5e-07 58.2 69 44.9
SalBow1G4032 Salvia bowleyana HOM05D007590 ORTHO05D007875 4.5e-07 58.2 97 36.1
SalBow1G6340 Salvia bowleyana HOM05D007590 ORTHO05D007875 4.5e-07 58.2 97 36.1
BcaC04g22619 Brassica carinata HOM05D010600 ORTHO05D007875 7.7e-07 57.4 110 31.8
Eucgr.D01739 Eucalyptus grandis HOM05D007590 ORTHO05D007875 7.7e-07 57.4 75 49.3
Oeu063521.1 Olea europaea HOM05D007590 ORTHO05D007875 7.7e-07 57.4 107 39.3
A09p14360 Brassica napus HOM05D010600 ORTHO05D007875 1.0e-06 57.0 112 32.1
BraA09t37083Z Brassica rapa HOM05D010600 ORTHO05D007875 1.0e-06 57.0 112 32.1
Nitab4.5_0002782g0040 Nicotiana tabacum HOM05D007590 ORTHO05D007875 1.0e-06 57.0 116 39.7
AL2G10440 Arabidopsis lyrata HOM05D010600 ORTHO05D007875 1.3e-06 56.6 113 30.1
BcaB07g31500 Brassica carinata HOM05D010600 ORTHO05D007875 1.3e-06 56.6 110 30.9
Aa31LG2G1420 Aethionema arabicum HOM05D010600 ORTHO05D007875 1.7e-06 56.2 115 29.6
Duzib068G0682 Durio zibethinus HOM05D007590 ORTHO05D007875 2.3e-06 55.8 116 37.1
BcaB07g31463 Brassica carinata HOM05D010600 ORTHO05D007875 2.9e-06 55.5 114 28.9
BolC9t54630H Brassica oleracea HOM05D010600 ORTHO05D007875 3.8e-06 55.1 110 30.0
COL.COLO4_10703 Corchorus olitorius HOM05D007590 ORTHO05D007875 3.8e-06 55.1 81 46.9
BcaC04g22568 Brassica carinata HOM05D010600 ORTHO05D007875 5.0e-06 54.7 114 28.9
ATR0602G105 Amborella trichopoda HOM05D007590 ORTHO05D007875 6.6e-06 54.3 71 42.3
AT1G64405 Arabidopsis thaliana HOM05D010600 ORTHO05D007875 6.6e-06 54.3 117 29.1
C09p17280 Brassica napus HOM05D010600 ORTHO05D007875 6.6e-06 54.3 110 30.9
CANSAT21G0370 Cannabis sativa HOM05D007590 ORTHO05D007875 6.6e-06 54.3 82 41.5
C09p17810 Brassica napus HOM05D010600 ORTHO05D007875 8.6e-06 53.9 115 28.7
BolC9t54679H Brassica oleracea HOM05D010600 ORTHO05D007875 8.6e-06 53.9 115 28.7


User provided reference genes

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