Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G015367 Glycine max HOM05D006404 ORTHO05D008170 3.3e-228 794.7 390 100.0
Glyma.01G227500 Glycine max HOM05D006404 ORTHO05D008170 7.1e-207 723.8 380 92.1
VMungo1215G1207 Vigna mungo HOM05D006404 ORTHO05D008170 5.9e-185 651.0 381 84.3
Glyma.11G094500 Glycine max HOM05D006404 ORTHO05D008170 9.5e-159 563.9 380 71.1
Glyma.12G020900 Glycine max HOM05D006404 ORTHO05D008170 2.0e-156 556.2 382 69.6
Lalb_Chr03g0024521 Lupinus albus HOM05D006404 ORTHO05D008170 3.4e-156 555.4 380 70.5
Lj3g0019929 Lotus japonicus HOM05D006404 ORTHO05D008170 5.7e-156 554.7 381 72.2
arahy.Tifrunner.gnm1.ann1.E0EAPG Arachis hypogaea HOM05D006404 ORTHO05D008170 8.3e-155 550.8 380 70.5
VMungo1127G0106 Vigna mungo HOM05D006404 ORTHO05D008170 1.4e-154 550.1 380 70.8
arahy.Tifrunner.gnm1.ann1.BK260Y Arachis hypogaea HOM05D006404 ORTHO05D008170 9.2e-154 547.4 380 70.3
Medtr4g076810 Medicago truncatula HOM05D006404 ORTHO05D008170 1.0e-152 543.9 388 70.4
Psat7g172680 Pisum sativum HOM05D006404 ORTHO05D008170 5.6e-151 538.1 388 69.8
Ca_26059_v3 Cicer arietinum L. HOM05D006404 ORTHO05D008170 2.1e-150 536.2 385 68.6
Ca_30127_v3 Cicer arietinum L. HOM05D006404 ORTHO05D008170 2.1e-150 536.2 385 68.6
TPR.G13759 Trifolium pratense HOM05D006404 ORTHO05D008170 2.6e-148 529.3 390 68.5
Phvul.002G034601 Phaseolus vulgaris HOM05D006404 ORTHO05D008170 2.4e-146 522.7 380 70.8
CiPaw.13G154900 Carya illinoinensis HOM05D006404 ORTHO05D008170 1.2e-134 483.8 381 62.2
FAN16G0405 Fragaria x ananassa HOM05D006404 ORTHO05D008170 3.6e-134 482.3 381 62.5
Manes.06G162300 Manihot esculenta HOM05D006404 ORTHO05D008170 4.7e-134 481.9 379 61.5
MD03G1172000 Malus domestica HOM05D006404 ORTHO05D008170 1.1e-133 480.7 381 62.7
Prupe.4G254900 Prunus persica HOM05D006404 ORTHO05D008170 1.1e-133 480.7 379 60.7
FAN21G1559 Fragaria x ananassa HOM05D006404 ORTHO05D008170 6.8e-133 478.0 381 62.2
FAN11G2181 Fragaria x ananassa HOM05D006404 ORTHO05D008170 8.9e-133 477.6 381 61.9
Atru.chr3.2649 Acer truncatum HOM05D006404 ORTHO05D008170 1.2e-132 477.2 378 60.8
RcHm_v2.0_Chr5g0053011 Rosa chinensis HOM05D006404 ORTHO05D008170 1.5e-132 476.9 381 61.4
FvH4_3g28450 Fragaria vesca HOM05D006404 ORTHO05D008170 2.0e-132 476.5 381 61.9
Cfa009810 Carpinus fangiana HOM05D006404 ORTHO05D008170 7.6e-132 474.6 381 62.2
QL01p004100 Quercus lobata HOM05D006404 ORTHO05D008170 2.2e-131 473.0 381 61.9
Ciclev10014162m.g Citrus clementina HOM05D006404 ORTHO05D008170 5.1e-128 461.8 378 59.5
Gohir.A05G070000 Gossypium hirsutum HOM05D006404 ORTHO05D008170 5.6e-127 458.4 377 60.2
Gorai.009G074000 Gossypium raimondii HOM05D006404 ORTHO05D008170 7.3e-127 458.0 377 59.9
Thecc.09G239000 Theobroma cacao HOM05D006404 ORTHO05D008170 9.6e-127 457.6 377 59.4
Potri.001G255700 Populus trichocarpa HOM05D006404 ORTHO05D008170 1.6e-126 456.8 379 58.6
Potri.009G051100 Populus trichocarpa HOM05D006404 ORTHO05D008170 1.6e-126 456.8 379 59.9
Actinidia06923 Actinidia chinensis HOM05D006404 ORTHO05D008170 2.1e-126 456.4 376 59.6
CSS0037938 Camellia sinensis var. sinensis HOM05D006404 ORTHO05D008170 2.8e-126 456.1 377 58.9
Duzib150G0746 Durio zibethinus HOM05D006404 ORTHO05D008170 2.8e-126 456.1 376 59.3
vmacro04128 Vaccinium macrocarpon HOM05D006404 ORTHO05D008170 2.8e-126 456.1 380 58.2
COL.COLO4_36457 Corchorus olitorius HOM05D006404 ORTHO05D008170 6.2e-126 454.9 381 58.0
Duzib168G1842 Durio zibethinus HOM05D006404 ORTHO05D008170 1.1e-125 454.1 377 59.4
TAR633G0603 Trochodendron aralioides HOM05D006404 ORTHO05D008170 1.4e-125 453.8 381 59.8
GSVIVG01031534001 Vitis vinifera HOM05D006404 ORTHO05D008170 6.8e-125 451.4 381 58.8
Haze_23174 Corylus avellana HOM05D006404 ORTHO05D008170 2.6e-124 449.5 389 58.6
Sabra16G0156500 Salix brachista HOM05D006404 ORTHO05D008170 2.6e-124 449.5 379 58.8
Sabra09G0037200 Salix brachista HOM05D006404 ORTHO05D008170 9.9e-124 447.6 379 58.3
Actinidia16347 Actinidia chinensis HOM05D006404 ORTHO05D008170 2.9e-123 446.0 376 58.0
TWI32G0006 Tripterygium wilfordii HOM05D006404 ORTHO05D008170 2.1e-121 439.9 379 57.8
Gorai.006G126600 Gossypium raimondii HOM05D006404 ORTHO05D008170 4.6e-121 438.7 377 57.6
Rhsim13G0217700 Rhododendron simsii HOM05D006404 ORTHO05D008170 4.6e-121 438.7 419 51.8
Nn2g15163 Nelumbo nucifera HOM05D006404 ORTHO05D008170 1.3e-120 437.2 382 56.0
Gohir.D09G109000 Gossypium hirsutum HOM05D006404 ORTHO05D008170 2.3e-120 436.4 377 57.6
CANSAT54G0859 Cannabis sativa HOM05D006404 ORTHO05D008170 3.9e-120 435.6 379 58.0
Cc01_g05020 Coffea canephora HOM05D006404 ORTHO05D008170 2.5e-119 433.0 377 56.8
Nn7g36358 Nelumbo nucifera HOM05D006404 ORTHO05D008170 3.3e-119 432.6 382 57.1
Gohir.A09G112300 Gossypium hirsutum HOM05D006404 ORTHO05D008170 4.3e-119 432.2 372 57.0
Eucgr.B03709 Eucalyptus grandis HOM05D006404 ORTHO05D008170 2.1e-118 429.9 383 56.9
MELO3C015171.2 Cucumis melo HOM05D006404 ORTHO05D008170 1.4e-117 427.2 377 57.0
CsaV3_1G042990 Cucumis sativus L. HOM05D006404 ORTHO05D008170 4.0e-117 425.6 377 57.0
Peaxi162Scf00004g03311 Petunia axillaris HOM05D006404 ORTHO05D008170 4.0e-117 425.6 380 55.0
Oeu061307.1 Olea europaea HOM05D006404 ORTHO05D008170 6.9e-117 424.9 377 56.8
THA.LOC104811179 Tarenaya hassleriana HOM05D006404 ORTHO05D008170 2.0e-116 423.3 377 54.6
Nitab4.5_0007711g0010 Nicotiana tabacum HOM05D006404 ORTHO05D008170 1.3e-115 420.6 381 54.1
Sed0002434 Sechium edule HOM05D006404 ORTHO05D008170 2.2e-115 419.9 377 56.0
ClCG03G013070 Citrullus lanatus HOM05D006404 ORTHO05D008170 6.4e-115 418.3 377 56.8
PGR102G1713 Punica granatum HOM05D006404 ORTHO05D008170 5.4e-114 415.2 384 53.9
MBI19_g45588_MAGBIO Magnolia biondii HOM05D006404 ORTHO05D008170 1.6e-113 413.7 388 53.1
Lj2A624G32 Lonicera japonica HOM05D006404 ORTHO05D008170 1.3e-112 410.6 360 57.2
PGSC0003DMG400029994 Solanum tuberosum HOM05D006404 ORTHO05D008170 1.3e-112 410.6 381 53.3
Nitab4.5_0006123g0010 Nicotiana tabacum HOM05D006404 ORTHO05D008170 3.9e-112 409.1 381 53.0
Sopen11g025080 Solanum pennellii HOM05D006404 ORTHO05D008170 3.9e-112 409.1 381 53.0
Sc16g0011280 Simmondsia chinensis HOM05D006404 ORTHO05D008170 8.7e-112 407.9 376 54.0
CAN.G494.3 Capsicum annuum HOM05D006404 ORTHO05D008170 3.3e-111 406.0 380 53.7
Solyc11g065340.2 Solanum lycopersicum HOM05D006404 ORTHO05D008170 3.3e-111 406.0 383 52.7
MSTRG.12459 Avicennia marina HOM05D006404 ORTHO05D008170 9.6e-111 404.4 379 52.8
AUR62039864 Chenopodium quinoa HOM05D006404 ORTHO05D008170 1.4e-106 390.6 376 49.5
AUR62000151 Chenopodium quinoa HOM05D006404 ORTHO05D008170 2.4e-106 389.8 376 49.7
Migut.N02343 Erythranthe guttata HOM05D006404 ORTHO05D008170 2.4e-106 389.8 375 52.8
Aqoxy2G00213 Aquilegia oxysepala HOM05D006404 ORTHO05D008170 9.6e-103 377.9 378 50.5
ATR0307G124 Amborella trichopoda HOM05D006404 ORTHO05D008170 2.8e-102 376.3 379 49.3
Phvul.011G076700 Phaseolus vulgaris HOM05D006404 ORTHO05D008170 2.8e-102 376.3 256 73.0
ECA233G0536 Erigeron canadensis HOM05D006404 ORTHO05D008170 8.1e-102 374.8 384 52.3
Zm00001eb332810 Zea mays HOM05D006404 ORTHO05D008170 8.1e-102 374.8 379 49.1
Hund07470 Selenicereus undatus HOM05D006404 ORTHO05D008170 1.2e-100 370.9 377 48.5
Ah.06g193910 Amaranthus hybridus HOM05D006404 ORTHO05D008170 6.5e-99 365.2 417 43.9
Os01g0275900 Oryza sativa ssp. japonica HOM05D006404 ORTHO05D008170 7.1e-98 361.7 359 47.9
SGA_v2.0_scaffold3G01478 Striga asiatica HOM05D006404 ORTHO05D008170 1.3e-96 357.5 384 46.4
EL10Ac4g10212 Beta vulgaris HOM05D006404 ORTHO05D008170 1.5e-95 354.0 375 45.6
HanXRQChr13g0401241 Helianthus annuus HOM05D006404 ORTHO05D008170 1.3e-94 350.9 383 46.5
CSS0019486 Camellia sinensis var. sinensis HOM05D006404 ORTHO05D008170 6.3e-94 348.6 288 58.0
SEGI_17812 Sequoiadendron giganteum HOM05D006404 ORTHO05D008170 1.3e-91 340.9 379 44.9
DCAR_029968 Daucus carota HOM05D006404 ORTHO05D008170 8.4e-91 338.2 377 46.7
Cpa.g.sc84.27 Carica papaya HOM05D006404 ORTHO05D008170 3.1e-85 319.7 326 53.4
Lsat_1_v5_gn_6_25840 Lactuca sativa HOM05D006404 ORTHO05D008170 6.5e-83 312.0 393 43.3
Manes.14G004336 Manihot esculenta HOM05D006404 ORTHO05D008170 2.8e-78 296.6 379 44.1
unitig_27.g25000 Utricularia gibba HOM05D006404 ORTHO05D008170 2.2e-67 260.4 286 47.9
Mapoly0128s0014 Marchantia polymorpha HOM05D006404 ORTHO05D008170 2.1e-65 253.8 405 38.0
HPP92_028181 Vanilla planifolia HOM05D006404 ORTHO05D008170 1.6e-57 227.6 232 47.4
Gohir.D05G073000 Gossypium hirsutum HOM05D006404 ORTHO05D008170 1.0e-56 224.9 188 58.5
CBR_g12234 Chara braunii HOM05D006404 ORTHO05D008170 1.8e-45 187.6 420 29.0
Gohir.D05G072932 Gossypium hirsutum HOM05D006404 ORTHO05D008170 3.1e-45 186.8 151 60.3
FAN25G0856 Fragaria x ananassa HOM05D006404 ORTHO05D008170 4.0e-24 116.7 94 64.9
HPP92_028182 Vanilla planifolia HOM05D006404 ORTHO05D008170 8.9e-08 62.4 49 53.1
COL.COLO4_24475 Corchorus olitorius HOM05D003120 ORTHO05D003568 2.0e-07 61.2 40 65.0


User provided reference genes

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