Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G013800 Glycine max HOM05D007049 ORTHO05D008896 1.2e-46 189.5 98 100.0
VMungo1215G2220 Vigna mungo HOM05D007049 ORTHO05D008896 2.7e-38 161.8 97 86.6
Phvul.002G036400 Phaseolus vulgaris HOM05D007049 ORTHO05D008896 1.8e-37 159.1 91 89.0
Ca_24471_v3 Cicer arietinum L. HOM05D007049 ORTHO05D008896 8.2e-35 150.2 92 80.4
Psat7g180160 Pisum sativum HOM05D007049 ORTHO05D008896 8.2e-35 150.2 91 82.4
Psat2g187280 Pisum sativum HOM05D007049 ORTHO05D008896 3.1e-34 148.3 91 81.3
Psat7g180120 Pisum sativum HOM05D007049 ORTHO05D008896 5.3e-34 147.5 91 82.4
TPR.G37942 Trifolium pratense HOM05D007049 ORTHO05D008896 1.2e-33 146.4 90 81.1
Medtr5g008340 Medicago truncatula HOM05D007049 ORTHO05D008896 1.5e-33 146.0 90 81.1
Psat7g180080 Pisum sativum HOM05D007049 ORTHO05D008896 4.5e-33 144.4 91 78.0
LjContig00222g0016429 Lotus japonicus HOM05D007049 ORTHO05D008896 5.9e-33 144.1 86 86.0
Lalb_Chr03g0041921 Lupinus albus HOM05D007049 ORTHO05D008896 1.7e-32 142.5 91 80.2
arahy.Tifrunner.gnm1.ann1.6H88WF Arachis hypogaea HOM05D007049 ORTHO05D008896 2.1e-30 135.6 87 79.3
Psat7g195680 Pisum sativum HOM05D007049 ORTHO05D008896 2.7e-30 135.2 91 75.8
TAR624G0348 Trochodendron aralioides HOM05D007049 ORTHO05D008896 3.6e-30 134.8 94 75.5
COL.COLO4_06913 Corchorus olitorius HOM05D007049 ORTHO05D008896 4.7e-30 134.4 88 78.4
Thecc.08G177900 Theobroma cacao HOM05D007049 ORTHO05D008896 7.9e-30 133.7 91 75.8
QL04p010524 Quercus lobata HOM05D007049 ORTHO05D008896 1.4e-29 132.9 91 76.9
TWI12G1157 Tripterygium wilfordii HOM05D007049 ORTHO05D008896 5.1e-29 131.0 91 74.7
FAN18G1167 Fragaria x ananassa HOM05D007049 ORTHO05D008896 1.1e-28 129.8 97 71.1
FAN18G2563 Fragaria x ananassa HOM05D007049 ORTHO05D008896 1.1e-28 129.8 97 71.1
Prupe.8G009200 Prunus persica HOM05D007049 ORTHO05D008896 1.5e-28 129.4 98 68.4
PGR042G0623 Punica granatum HOM05D007049 ORTHO05D008896 1.5e-28 129.4 84 81.0
RcHm_v2.0_Chr7g0212501 Rosa chinensis HOM05D007049 ORTHO05D008896 2.0e-28 129.0 91 72.5
Gohir.D13G119000 Gossypium hirsutum HOM05D007049 ORTHO05D008896 2.6e-28 128.6 96 69.8
Gorai.013G133400 Gossypium raimondii HOM05D007049 ORTHO05D008896 2.6e-28 128.6 96 69.8
Gohir.A13G115800 Gossypium hirsutum HOM05D007049 ORTHO05D008896 3.3e-28 128.3 96 69.8
TAR624G1340 Trochodendron aralioides HOM05D007049 ORTHO05D008896 4.4e-28 127.9 88 77.3
RcHm_v2.0_Chr7g0212661 Rosa chinensis HOM05D007049 ORTHO05D008896 5.7e-28 127.5 91 71.4
FAN08G2573 Fragaria x ananassa HOM05D007049 ORTHO05D008896 7.4e-28 127.1 86 76.7
Oeu023195.1 Olea europaea HOM05D007049 ORTHO05D008896 7.4e-28 127.1 91 72.5
RcHm_v2.0_Chr7g0212551 Rosa chinensis HOM05D007049 ORTHO05D008896 9.7e-28 126.7 88 73.9
PGSC0003DMG401002024 Solanum tuberosum HOM05D007049 ORTHO05D008896 9.7e-28 126.7 89 73.0
Solyc09g007070.1 Solanum lycopersicum HOM05D007049 ORTHO05D008896 1.3e-27 126.3 89 73.0
Sopen09g001930 Solanum pennellii HOM05D007049 ORTHO05D008896 1.3e-27 126.3 89 73.0
Nitab4.5_0000213g0160 Nicotiana tabacum HOM05D007049 ORTHO05D008896 1.7e-27 125.9 91 72.5
SalBow7G2968 Salvia bowleyana HOM05D007049 ORTHO05D008896 1.7e-27 125.9 91 70.3
Cc10_g08690 Coffea canephora HOM05D007049 ORTHO05D008896 2.2e-27 125.6 91 73.6
Prupe.8G008400 Prunus persica HOM05D007049 ORTHO05D008896 2.2e-27 125.6 98 67.3
Hma1.2p1_0400F.1_g144580 Hydrangea macrophylla HOM05D007049 ORTHO05D008896 2.8e-27 125.2 91 72.5
MD10G1006000 Malus domestica HOM05D007049 ORTHO05D008896 2.8e-27 125.2 89 71.9
Duzib177G1207 Durio zibethinus HOM05D007049 ORTHO05D008896 3.7e-27 124.8 91 71.4
Migut.C01376 Erythranthe guttata HOM05D007049 ORTHO05D008896 3.7e-27 124.8 91 71.4
arahy.Tifrunner.gnm1.ann1.CT79FY Arachis hypogaea HOM05D007049 ORTHO05D008896 4.8e-27 124.4 80 78.8
Nitab4.5_0000398g0030 Nicotiana tabacum HOM05D007049 ORTHO05D008896 4.8e-27 124.4 91 71.4
CAN.G4100.1 Capsicum annuum HOM05D007049 ORTHO05D008896 6.3e-27 124.0 89 71.9
CAN.G608.33 Capsicum annuum HOM05D007049 ORTHO05D008896 6.3e-27 124.0 89 71.9
Eucgr.F02581 Eucalyptus grandis HOM05D007049 ORTHO05D008896 8.2e-27 123.6 85 74.1
Peaxi162Scf00078g00061 Petunia axillaris HOM05D007049 ORTHO05D008896 8.2e-27 123.6 91 70.3
Cpa.g.sc19.285 Carica papaya HOM05D007049 ORTHO05D008896 1.1e-26 123.2 88 75.0
CANSAT25G3584 Cannabis sativa HOM05D007049 ORTHO05D008896 1.4e-26 122.9 92 70.7
CiPaw.15G066500 Carya illinoinensis HOM05D007049 ORTHO05D008896 1.4e-26 122.9 88 72.7
MBI13_g15314_MAGBIO Magnolia biondii HOM05D007049 ORTHO05D008896 1.4e-26 122.9 86 72.1
MBI13_g30327_MAGBIO Magnolia biondii HOM05D007049 ORTHO05D008896 1.4e-26 122.9 86 72.1
Nn5g27287 Nelumbo nucifera HOM05D007049 ORTHO05D008896 1.4e-26 122.9 88 71.6
Sed0002937 Sechium edule HOM05D007049 ORTHO05D008896 1.2e-25 119.8 91 69.2
DCAR_017595 Daucus carota HOM05D007049 ORTHO05D008896 2.6e-25 118.6 91 68.1
HanXRQChr10g0289041 Helianthus annuus HOM05D007049 ORTHO05D008896 2.6e-25 118.6 91 65.9
Rhsim08G0116100 Rhododendron simsii HOM05D007049 ORTHO05D008896 2.6e-25 118.6 86 73.3
DCAR_006853 Daucus carota HOM05D007049 ORTHO05D008896 4.5e-25 117.9 91 67.0
CSS0000179 Camellia sinensis var. sinensis HOM05D007049 ORTHO05D008896 5.9e-25 117.5 91 65.9
RcHm_v2.0_Chr6g0251481 Rosa chinensis HOM05D007049 ORTHO05D008896 5.9e-25 117.5 88 71.6
Sabra01G0012500 Salix brachista HOM05D007049 ORTHO05D008896 5.9e-25 117.5 84 70.2
THA.LOC104824284 Tarenaya hassleriana HOM05D007049 ORTHO05D008896 5.9e-25 117.5 88 70.5
Ciclev10023082m.g Citrus clementina HOM05D007049 ORTHO05D008896 7.7e-25 117.1 84 71.4
MELO3C022175.2 Cucumis melo HOM05D007049 ORTHO05D008896 7.7e-25 117.1 79 73.4
CsaV3_5G039970 Cucumis sativus L. HOM05D007049 ORTHO05D008896 7.7e-25 117.1 79 73.4
Sc20g0003280 Simmondsia chinensis HOM05D007049 ORTHO05D008896 7.7e-25 117.1 81 74.1
Cfa019294 Carpinus fangiana HOM05D007049 ORTHO05D008896 1.0e-24 116.7 91 69.2
EL10Ac7g16149 Beta vulgaris HOM05D007049 ORTHO05D008896 1.7e-24 115.9 88 65.9
ECA248G1776 Erigeron canadensis HOM05D007049 ORTHO05D008896 1.7e-24 115.9 91 65.9
Os08g0278600 Oryza sativa ssp. japonica HOM05D007049 ORTHO05D008896 1.7e-24 115.9 82 68.3
ClCG08G001090 Citrullus lanatus HOM05D007049 ORTHO05D008896 3.8e-24 114.8 79 73.4
Sp4g21990 Schrenkiella parvula HOM05D007049 ORTHO05D008896 3.8e-24 114.8 88 68.2
Aa31LG5G19930 Aethionema arabicum HOM05D007049 ORTHO05D008896 6.5e-24 114.0 86 68.6
BcaC02g07431 Brassica carinata HOM05D007049 ORTHO05D008896 6.5e-24 114.0 89 66.3
C04p67530 Brassica napus HOM05D007049 ORTHO05D008896 6.5e-24 114.0 89 66.3
Carub.0004s2178 Capsella rubella HOM05D007049 ORTHO05D008896 6.5e-24 114.0 88 69.3
FAN04G0010 Fragaria x ananassa HOM05D007049 ORTHO05D008896 6.5e-24 114.0 81 72.8
Prupe.8G008800 Prunus persica HOM05D007049 ORTHO05D008896 6.5e-24 114.0 78 75.6
Ah.05g168610 Amaranthus hybridus HOM05D007049 ORTHO05D008896 8.5e-24 113.6 88 65.9
HanXRQChr04g0114811 Helianthus annuus HOM05D007049 ORTHO05D008896 8.5e-24 113.6 91 63.7
AUR62022356 Chenopodium quinoa HOM05D007049 ORTHO05D008896 1.1e-23 113.2 88 63.6
AUR62034352 Chenopodium quinoa HOM05D007049 ORTHO05D008896 1.1e-23 113.2 88 63.6
Thhalv10017481m.g Eutrema salsugineum HOM05D007049 ORTHO05D008896 1.1e-23 113.2 88 67.0
unitig_46.g17984 Utricularia gibba HOM05D007049 ORTHO05D008896 1.1e-23 113.2 89 70.8
AL4G37190 Arabidopsis lyrata HOM05D007049 ORTHO05D008896 1.9e-23 112.5 88 68.2
AT2G39725 Arabidopsis thaliana HOM05D007049 ORTHO05D008896 2.5e-23 112.1 88 68.2
CARHR134570 Cardamine hirsuta HOM05D007049 ORTHO05D008896 7.2e-23 110.5 81 69.1
BcaB06g29104 Brassica carinata HOM05D007049 ORTHO05D008896 9.4e-23 110.2 90 65.6
BolC4t28250H Brassica oleracea HOM05D007049 ORTHO05D008896 9.4e-23 110.2 90 65.6
A04p30310 Brassica napus HOM05D007049 ORTHO05D008896 1.2e-22 109.8 90 64.4
BraA04t18476Z Brassica rapa HOM05D007049 ORTHO05D008896 2.1e-22 109.0 90 64.4
Sabra01G0012700 Salix brachista HOM05D007049 ORTHO05D008896 2.1e-22 109.0 80 68.8
Aqoxy3G02546 Aquilegia oxysepala HOM05D007049 ORTHO05D008896 2.7e-22 108.6 78 69.2
PSO017G7166 Papaver somniferum HOM05D007049 ORTHO05D008896 4.0e-21 104.8 71 73.2
Zm00001eb026180 Zea mays HOM05D007049 ORTHO05D008896 8.8e-21 103.6 79 67.1
HPP92_017350 Vanilla planifolia HOM05D007049 ORTHO05D008896 5.7e-20 100.9 83 62.7
FAN13G1882 Fragaria x ananassa HOM05D007049 ORTHO05D008896 7.4e-20 100.5 69 72.5
SGA_v2.0_scaffold118G32610 Striga asiatica HOM05D007049 ORTHO05D008896 7.4e-20 100.5 72 73.6
ATR0057G071 Amborella trichopoda HOM05D007049 ORTHO05D008896 3.1e-18 95.1 87 56.3
Manes.01G011600 Manihot esculenta HOM05D007049 ORTHO05D008896 4.1e-18 94.7 67 74.6
Potri.001G018100 Populus trichocarpa HOM05D007049 ORTHO05D008896 4.1e-18 94.7 60 80.0
Pp3c4_6780 Physcomitrium patens HOM05D007049 ORTHO05D008896 3.5e-17 91.7 77 64.9
SHI21473 Sapria himalayana HOM05D000105 ORTHO05D000023 1.3e-16 89.7 72 62.5
SMO353G0203 Selaginella moellendorffii HOM05D007049 ORTHO05D008896 1.3e-16 89.7 76 59.2
Prupe.8G009100 Prunus persica HOM05D007049 ORTHO05D008896 1.5e-15 86.3 90 55.6
MD05G1008200 Malus domestica HOM05D007049 ORTHO05D008896 2.7e-14 82.0 63 68.3
Mapoly0004s0187 Marchantia polymorpha HOM05D007049 ORTHO05D008896 2.0e-12 75.9 69 58.0
MCO05G024 Micromonas commoda HOM05D007049 ORTHO05D008896 2.7e-06 55.5 79 40.5


User provided reference genes

Program Settings