Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G013200 Glycine max HOM05D003592 ORTHO05D004208 5.1e-63 244.2 119 100.0
Glyma.01G230200 Glycine max HOM05D003592 ORTHO05D004208 1.3e-47 193.0 134 81.3
Phvul.002G036900 Phaseolus vulgaris HOM05D003592 ORTHO05D004208 4.2e-41 171.4 136 72.8
VMungo1215G0435 Vigna mungo HOM05D003592 ORTHO05D004208 1.0e-39 166.8 136 68.4
arahy.Tifrunner.gnm1.ann1.I6057L Arachis hypogaea HOM05D003592 ORTHO05D004208 7.4e-38 160.6 129 69.0
arahy.Tifrunner.gnm1.ann1.F45BIC Arachis hypogaea HOM05D003592 ORTHO05D004208 9.6e-38 160.2 129 69.0
Psat2g187520 Pisum sativum HOM05D003592 ORTHO05D004208 1.4e-33 146.4 137 62.8
LjContig00222g0008170 Lotus japonicus HOM05D003592 ORTHO05D004208 4.2e-33 144.8 130 63.1
Ca_24466_v3 Cicer arietinum L. HOM05D003592 ORTHO05D004208 2.1e-32 142.5 125 64.8
Medtr5g008210 Medicago truncatula HOM05D003592 ORTHO05D004208 1.0e-31 140.2 135 61.5
TPR.G37953 Trifolium pratense HOM05D003592 ORTHO05D004208 1.3e-31 139.8 120 65.8
GSVIVG01024455001 Vitis vinifera HOM05D003592 ORTHO05D004208 7.6e-27 124.0 120 56.7
CANSAT21G0974 Cannabis sativa HOM05D003592 ORTHO05D004208 5.0e-26 121.3 127 54.3
Manes.08G164900 Manihot esculenta HOM05D003592 ORTHO05D004208 1.1e-25 120.2 130 55.4
Manes.09G123900 Manihot esculenta HOM05D003592 ORTHO05D004208 1.9e-25 119.4 134 55.2
MD07G1305300 Malus domestica HOM05D003592 ORTHO05D004208 3.2e-25 118.6 130 53.1
Potri.013G081700 Populus trichocarpa HOM05D003592 ORTHO05D004208 3.2e-25 118.6 137 55.5
Haze_00584 Corylus avellana HOM05D003592 ORTHO05D004208 4.2e-25 118.2 134 54.5
Sed0022386 Sechium edule HOM05D003592 ORTHO05D004208 5.5e-25 117.9 126 56.3
Prupe.2G323400 Prunus persica HOM05D003592 ORTHO05D004208 7.2e-25 117.5 128 55.5
QL09p026459 Quercus lobata HOM05D003592 ORTHO05D004208 3.5e-24 115.2 129 53.5
MELO3C017620.2 Cucumis melo HOM05D003592 ORTHO05D004208 1.0e-23 113.6 135 51.1
CsaV3_4G004470 Cucumis sativus L. HOM05D003592 ORTHO05D004208 1.3e-23 113.2 137 49.6
TWI32G0722 Tripterygium wilfordii HOM05D003592 ORTHO05D004208 1.3e-23 113.2 120 55.8
CiPaw.05G236400 Carya illinoinensis HOM05D003592 ORTHO05D004208 1.8e-23 112.8 135 53.3
Sopen03g027580 Solanum pennellii HOM05D003592 ORTHO05D004208 3.9e-23 111.7 128 52.3
Solyc03g096840.4 Solanum lycopersicum HOM05D003592 ORTHO05D004208 1.1e-22 110.2 128 51.6
TWI34G2026 Tripterygium wilfordii HOM05D003592 ORTHO05D004208 1.1e-22 110.2 128 53.1
FvH4_7g33540 Fragaria vesca HOM05D003592 ORTHO05D004208 1.5e-22 109.8 131 51.9
FAN01G2998 Fragaria x ananassa HOM05D003592 ORTHO05D004208 1.5e-22 109.8 132 51.5
Eucgr.A02954 Eucalyptus grandis HOM05D003592 ORTHO05D004208 1.9e-22 109.4 127 50.4
Eucgr.L03660 Eucalyptus grandis HOM05D003592 ORTHO05D004208 3.3e-22 108.6 126 50.0
Duzib106G0206 Durio zibethinus HOM05D003592 ORTHO05D004208 9.7e-22 107.1 136 50.0
Duzib177G0010 Durio zibethinus HOM05D003592 ORTHO05D004208 9.7e-22 107.1 137 48.2
FAN03G1827 Fragaria x ananassa HOM05D003592 ORTHO05D004208 9.7e-22 107.1 133 49.6
RcHm_v2.0_Chr1g0383761 Rosa chinensis HOM05D003592 ORTHO05D004208 9.7e-22 107.1 132 48.5
Sed0007086 Sechium edule HOM05D003592 ORTHO05D004208 9.7e-22 107.1 127 49.6
Ciclev10013115m.g Citrus clementina HOM05D003592 ORTHO05D004208 1.3e-21 106.7 126 52.4
FAN10G0119 Fragaria x ananassa HOM05D003592 ORTHO05D004208 1.3e-21 106.7 131 50.4
FAN10G2200 Fragaria x ananassa HOM05D003592 ORTHO05D004208 1.3e-21 106.7 131 50.4
MBI04_g21153_MAGBIO Magnolia biondii HOM05D003592 ORTHO05D004208 1.6e-21 106.3 130 48.5
COL.COLO4_08909 Corchorus olitorius HOM05D003592 ORTHO05D004208 2.2e-21 105.9 130 50.0
Sabra13G0071400 Salix brachista HOM05D003592 ORTHO05D004208 3.7e-21 105.1 120 51.7
Gorai.003G051000 Gossypium raimondii HOM05D003592 ORTHO05D004208 4.8e-21 104.8 127 52.0
Nitab4.5_0002302g0040 Nicotiana tabacum HOM05D003592 ORTHO05D004208 6.3e-21 104.4 131 50.4
Atru.chr12.2033 Acer truncatum HOM05D003592 ORTHO05D004208 8.2e-21 104.0 129 50.4
Gohir.D03G049600 Gossypium hirsutum HOM05D003592 ORTHO05D004208 8.2e-21 104.0 127 52.0
Gohir.A02G139000 Gossypium hirsutum HOM05D003592 ORTHO05D004208 1.4e-20 103.2 130 52.3
Thecc.05G207700 Theobroma cacao HOM05D003592 ORTHO05D004208 1.4e-20 103.2 138 50.0
Nitab4.5_0000021g0300 Nicotiana tabacum HOM05D003592 ORTHO05D004208 1.8e-20 102.8 129 49.6
PGSC0003DMG400000541 Solanum tuberosum HOM05D003592 ORTHO05D004208 3.1e-20 102.1 130 48.5
CAN.G303.68 Capsicum annuum HOM05D003592 ORTHO05D004208 4.1e-20 101.7 127 50.4
Dinv29178 Davidia involucrata HOM05D003592 ORTHO05D004208 5.3e-20 101.3 130 50.8
Nn3g19269 Nelumbo nucifera HOM05D003592 ORTHO05D004208 3.4e-19 98.6 133 46.6
TAR629G1675 Trochodendron aralioides HOM05D003592 ORTHO05D004208 4.5e-19 98.2 135 45.9
Actinidia08730 Actinidia chinensis HOM05D003592 ORTHO05D004208 7.7e-19 97.4 123 51.2
Thhalv10021768m.g Eutrema salsugineum HOM05D003592 ORTHO05D004208 7.7e-19 97.4 125 46.4
CSS0031198 Camellia sinensis var. sinensis HOM05D003592 ORTHO05D004208 1.3e-18 96.7 126 47.6
vmacro06490 Vaccinium macrocarpon HOM05D003592 ORTHO05D004208 1.3e-18 96.7 131 48.9
Cpa.g.sc39.41 Carica papaya HOM05D003592 ORTHO05D004208 1.7e-18 96.3 92 59.8
ClCG07G017260 Citrullus lanatus HOM05D003592 ORTHO05D004208 1.7e-18 96.3 93 58.1
Rhsim03G0219900 Rhododendron simsii HOM05D003592 ORTHO05D004208 1.7e-18 96.3 132 47.7
Carub.0006s1535 Capsella rubella HOM05D003592 ORTHO05D004208 5.0e-18 94.7 120 46.7
Dinv17270 Davidia involucrata HOM05D003592 ORTHO05D004208 5.0e-18 94.7 132 47.7
Peaxi162Scf01650g00057 Petunia axillaris HOM05D003592 ORTHO05D004208 5.0e-18 94.7 121 48.8
Actinidia34296 Actinidia chinensis HOM05D003592 ORTHO05D004208 6.5e-18 94.4 126 47.6
EL10Ac3g05109 Beta vulgaris HOM05D003592 ORTHO05D004208 6.5e-18 94.4 129 50.4
CARHR196060 Cardamine hirsuta HOM05D003592 ORTHO05D004208 6.5e-18 94.4 122 43.4
Duzib128G1398 Durio zibethinus HOM05D003592 ORTHO05D004208 6.5e-18 94.4 139 47.5
Nn1g02028 Nelumbo nucifera HOM05D003592 ORTHO05D004208 8.5e-18 94.0 119 47.9
MBI04_g29825_MAGBIO Magnolia biondii HOM05D000463 ORTHO05D013433 1.1e-17 93.6 89 56.2
CARHR077170 Cardamine hirsuta HOM05D003592 ORTHO05D004208 1.9e-17 92.8 117 47.0
BcaC05g30524 Brassica carinata HOM05D003592 ORTHO05D004208 2.5e-17 92.4 108 52.8
BraA03t12494Z Brassica rapa HOM05D003592 ORTHO05D004208 2.5e-17 92.4 125 49.6
PGR042G3489 Punica granatum HOM05D003592 ORTHO05D004208 2.5e-17 92.4 135 43.0
A03p33220 Brassica napus HOM05D003592 ORTHO05D004208 3.2e-17 92.0 125 48.8
AUR62018884 Chenopodium quinoa HOM05D003592 ORTHO05D004208 3.2e-17 92.0 128 46.1
Lsat_1_v5_gn_0_9420 Lactuca sativa HOM05D003592 ORTHO05D004208 4.2e-17 91.7 122 46.7
C05p63660 Brassica napus HOM05D003592 ORTHO05D004208 7.2e-17 90.9 123 51.2
BcaC01g04411 Brassica carinata HOM05D003592 ORTHO05D004208 9.4e-17 90.5 121 47.9
AUR62005925 Chenopodium quinoa HOM05D003592 ORTHO05D004208 9.4e-17 90.5 128 46.1
Sp3g02190 Schrenkiella parvula HOM05D003592 ORTHO05D004208 9.4e-17 90.5 120 45.8
Actinidia28268 Actinidia chinensis HOM05D003592 ORTHO05D004208 1.2e-16 90.1 126 46.8
AL6G28210 Arabidopsis lyrata HOM05D003592 ORTHO05D004208 1.2e-16 90.1 124 43.5
BolC5t35035H Brassica oleracea HOM05D003592 ORTHO05D004208 1.2e-16 90.1 122 51.6
Migut.F00107 Erythranthe guttata HOM05D003592 ORTHO05D004208 1.2e-16 90.1 126 45.2
C03p40480 Brassica napus HOM05D003592 ORTHO05D004208 1.6e-16 89.7 122 47.5
BolC3t16311H Brassica oleracea HOM05D003592 ORTHO05D004208 1.6e-16 89.7 122 47.5
DCAR_010550 Daucus carota HOM05D003592 ORTHO05D004208 2.7e-16 89.0 122 46.7
Migut.F00955 Erythranthe guttata HOM05D003592 ORTHO05D004208 2.7e-16 89.0 130 45.4
BcaB04g19374 Brassica carinata HOM05D003592 ORTHO05D004208 3.6e-16 88.6 119 47.1
A05p44040 Brassica napus HOM05D003592 ORTHO05D004208 3.6e-16 88.6 96 54.2
BraSC90t46707Z Brassica rapa HOM05D003592 ORTHO05D004208 3.6e-16 88.6 96 54.2
AT5G17165 Arabidopsis thaliana HOM05D003592 ORTHO05D004208 4.6e-16 88.2 116 42.2
CSS0018534 Camellia sinensis var. sinensis HOM05D003592 ORTHO05D004208 4.6e-16 88.2 130 46.2
AT3G03150 Arabidopsis thaliana HOM05D003592 ORTHO05D004208 6.1e-16 87.8 112 48.2
Ah.04g157330 Amaranthus hybridus HOM05D003592 ORTHO05D004208 7.9e-16 87.4 137 48.2
Cfa015910 Carpinus fangiana HOM05D003592 ORTHO05D004208 7.9e-16 87.4 96 51.0
Eucgr.A02956 Eucalyptus grandis HOM05D003592 ORTHO05D004208 1.0e-15 87.0 95 52.6
Actinidia18695 Actinidia chinensis HOM05D003592 ORTHO05D004208 1.4e-15 86.7 126 45.2
Aa31LG5G13630 Aethionema arabicum HOM05D003592 ORTHO05D004208 1.4e-15 86.7 128 43.8
Eucgr.K00100 Eucalyptus grandis HOM05D003592 ORTHO05D004208 1.4e-15 86.7 123 43.9
Sc19g0000280 Simmondsia chinensis HOM05D003592 ORTHO05D004208 1.4e-15 86.7 121 48.8
MD01G1233000 Malus domestica HOM05D003592 ORTHO05D004208 1.8e-15 86.3 99 47.5
BcaB08g36801 Brassica carinata HOM05D003592 ORTHO05D004208 3.9e-15 85.1 81 49.4
BcaC04g18828 Brassica carinata HOM05D003592 ORTHO05D004208 3.9e-15 85.1 132 40.2
CDE01G0008 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 3.9e-15 85.1 122 45.9
A10p22230 Brassica napus HOM05D003592 ORTHO05D004208 5.1e-15 84.7 129 39.5
BolC9t58839H Brassica oleracea HOM05D003592 ORTHO05D004208 5.1e-15 84.7 132 40.2
BraA10t44282Z Brassica rapa HOM05D003592 ORTHO05D004208 5.1e-15 84.7 129 39.5
Peaxi162Scf00815g00235 Petunia axillaris HOM05D003592 ORTHO05D004208 5.1e-15 84.7 122 45.9
THA.LOC104827220 Tarenaya hassleriana HOM05D003592 ORTHO05D004208 5.1e-15 84.7 129 46.5
AL3G12760 Arabidopsis lyrata HOM05D003592 ORTHO05D004208 6.7e-15 84.3 122 46.7
Carub.0003s0230 Capsella rubella HOM05D003592 ORTHO05D004208 6.7e-15 84.3 91 52.7
CiPaw.06G020500 Carya illinoinensis HOM05D003592 ORTHO05D004208 8.8e-15 84.0 137 40.9
MSTRG.8553 Avicennia marina HOM05D003592 ORTHO05D004208 1.1e-14 83.6 122 43.4
Sp6g27060 Schrenkiella parvula HOM05D003592 ORTHO05D004208 1.1e-14 83.6 121 40.5
Ah.13g071180 Amaranthus hybridus HOM05D003592 ORTHO05D004208 1.5e-14 83.2 132 43.9
MSTRG.14 Avicennia marina HOM05D003592 ORTHO05D004208 1.5e-14 83.2 123 43.1
Rhsim09G0211800 Rhododendron simsii HOM05D003592 ORTHO05D004208 1.5e-14 83.2 82 54.9
SGA_v2.0_scaffold18G08501 Striga asiatica HOM05D003592 ORTHO05D004208 1.5e-14 83.2 128 45.3
Sc13g0010720 Simmondsia chinensis HOM05D003592 ORTHO05D004208 2.0e-14 82.8 125 47.2
PGSC0003DMG400026933 Solanum tuberosum HOM05D003592 ORTHO05D004208 2.0e-14 82.8 120 45.8
Nitab4.5_0006270g0010 Nicotiana tabacum HOM05D003592 ORTHO05D004208 2.5e-14 82.4 122 45.9
Oeu055446.1 Olea europaea HOM05D003592 ORTHO05D004208 2.5e-14 82.4 81 54.3
Hma1.2p1_1235F.1_g269160 Hydrangea macrophylla HOM05D003592 ORTHO05D004208 3.3e-14 82.0 131 45.8
Oeu063742.2 Olea europaea HOM05D003592 ORTHO05D004208 5.7e-14 81.3 124 45.2
SalBow2G2852 Salvia bowleyana HOM05D003592 ORTHO05D004208 7.4e-14 80.9 120 45.0
Zm00001eb430170 Zea mays HOM05D003592 ORTHO05D004208 7.4e-14 80.9 125 40.8
PGSC0003DMG400027031 Solanum tuberosum HOM05D003592 ORTHO05D004208 9.7e-14 80.5 133 42.9
vmacro10180 Vaccinium macrocarpon HOM05D003592 ORTHO05D004208 9.7e-14 80.5 97 49.5
Os04g0598000 Oryza sativa ssp. japonica HOM05D003592 ORTHO05D004208 1.7e-13 79.7 123 41.5
PSO063G2386 Papaver somniferum HOM05D003592 ORTHO05D004208 1.7e-13 79.7 132 40.2
CDE12G0763 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 2.8e-13 79.0 120 41.7
Hma1.2p1_0758F.1_g213540 Hydrangea macrophylla HOM05D003592 ORTHO05D004208 2.8e-13 79.0 126 42.9
Cc02_g00450 Coffea canephora HOM05D003592 ORTHO05D004208 3.7e-13 78.6 91 51.6
Cc05_g00720 Coffea canephora HOM05D003592 ORTHO05D004208 3.7e-13 78.6 91 51.6
Peaxi162Scf00815g00250 Petunia axillaris HOM05D003592 ORTHO05D004208 4.8e-13 78.2 123 39.8
Aqoxy161s001 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 6.3e-13 77.8 133 42.1
Aqoxy161s002 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 6.3e-13 77.8 133 42.1
Aqoxy3G02065 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 6.3e-13 77.8 133 42.1
Aqoxy3G02066 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 6.3e-13 77.8 133 42.1
Nitab4.5_0000115g0330 Nicotiana tabacum HOM05D003592 ORTHO05D004208 6.3e-13 77.8 121 44.6
Thhalv10017419m.g Eutrema salsugineum HOM05D003592 ORTHO05D004208 1.1e-12 77.0 81 45.7
Hund21085 Selenicereus undatus HOM05D003592 ORTHO05D004208 1.4e-12 76.6 131 42.0
Solyc06g072845.1 Solanum lycopersicum HOM05D003592 ORTHO05D004208 1.4e-12 76.6 130 41.5
Sopen06g029230 Solanum pennellii HOM05D003592 ORTHO05D004208 1.4e-12 76.6 132 42.4
MELO3C005442.2 Cucumis melo HOM05D003592 ORTHO05D004208 1.8e-12 76.3 89 47.2
Oeu061060.1 Olea europaea HOM05D003592 ORTHO05D004208 1.8e-12 76.3 94 50.0
MSTRG.26939 Avicennia marina HOM05D003592 ORTHO05D004208 2.4e-12 75.9 116 42.2
HanXRQChr02g0041191 Helianthus annuus HOM05D003592 ORTHO05D004208 2.4e-12 75.9 109 44.0
Oeu038117.1 Olea europaea HOM05D003592 ORTHO05D004208 5.3e-12 74.7 96 46.9
CsaV3_5G005170 Cucumis sativus L. HOM05D003592 ORTHO05D004208 9.1e-12 73.9 89 44.9
AUR62028136 Chenopodium quinoa HOM05D003592 ORTHO05D004208 1.5e-11 73.2 165 33.9
Nitab4.5_0000115g0310 Nicotiana tabacum HOM05D003592 ORTHO05D004208 1.5e-11 73.2 123 40.7
Peaxi162Scf00133g00111 Petunia axillaris HOM05D003592 ORTHO05D004208 1.5e-11 73.2 138 38.4
SEGI_37277 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 1.5e-11 73.2 81 50.6
PSO170G2965 Papaver somniferum HOM05D003592 ORTHO05D004208 2.0e-11 72.8 133 38.3
CDE11G0498 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 2.6e-11 72.4 95 44.2
Nitab4.5_0003012g0010 Nicotiana tabacum HOM05D003592 ORTHO05D004208 4.5e-11 71.6 121 41.3
PGR142G3032 Punica granatum HOM05D003592 ORTHO05D004208 4.5e-11 71.6 86 46.5
Sopen06g029220 Solanum pennellii HOM05D003592 ORTHO05D004208 5.9e-11 71.2 124 41.9
ClCG01G004940 Citrullus lanatus HOM05D003592 ORTHO05D004208 7.7e-11 70.9 107 42.1
Solyc06g072840.3 Solanum lycopersicum HOM05D003592 ORTHO05D004208 1.7e-10 69.7 117 43.6
SGA_v2.0_scaffold165G38224 Striga asiatica HOM05D003592 ORTHO05D004208 1.7e-10 69.7 126 39.7
TAR375G0874 Trochodendron aralioides HOM05D003592 ORTHO05D004208 3.8e-10 68.6 81 48.1
HanXRQChr09g0257211 Helianthus annuus HOM05D003592 ORTHO05D004208 6.5e-10 67.8 111 43.2
unitig_62.g23842 Utricularia gibba HOM05D003592 ORTHO05D004208 6.5e-10 67.8 80 50.0
ATR0829G020 Amborella trichopoda HOM05D003592 ORTHO05D004208 8.5e-10 67.4 82 43.9
C09p60040 Brassica napus HOM05D003592 ORTHO05D004208 8.5e-10 67.4 121 37.2
CDE02G0247 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 1.1e-09 67.0 96 40.6
Sed0022343 Sechium edule HOM05D003592 ORTHO05D004208 1.1e-09 67.0 104 40.4
SEGI_20020 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 1.4e-09 66.6 133 39.8
ECA232G0247 Erigeron canadensis HOM05D003592 ORTHO05D004208 2.5e-09 65.9 102 42.2
HPP92_014706 Vanilla planifolia HOM05D003592 ORTHO05D004208 5.5e-09 64.7 116 37.9
HPP92_014744 Vanilla planifolia HOM05D003592 ORTHO05D004208 1.6e-08 63.2 101 41.6
Hund09766 Selenicereus undatus HOM05D003592 ORTHO05D004208 6.1e-08 61.2 125 40.8
Sed0014997 Sechium edule HOM05D003592 ORTHO05D004208 7.9e-08 60.8 99 40.4
SEGI_00089 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 1.0e-07 60.5 85 43.5
HPP92_020881 Vanilla planifolia HOM05D003592 ORTHO05D004208 3.0e-07 58.9 118 34.7
HPP92_020885 Vanilla planifolia HOM05D003592 ORTHO05D004208 3.0e-07 58.9 118 34.7
SEGI_16015 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 6.7e-07 57.8 81 40.7


User provided reference genes

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