Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G009700 Glycine max HOM05D007064 ORTHO05D008772 2.1e-241 838.6 416 100.0
VMungo1215G2591 Vigna mungo HOM05D007064 ORTHO05D008772 1.6e-220 769.2 418 91.1
Phvul.002G040600 Phaseolus vulgaris HOM05D007064 ORTHO05D008772 1.4e-216 756.1 416 89.7
arahy.Tifrunner.gnm1.ann1.P291P9 Arachis hypogaea HOM05D007064 ORTHO05D008772 5.3e-168 594.7 413 75.5
arahy.Tifrunner.gnm1.ann1.EDBW82 Arachis hypogaea HOM05D007064 ORTHO05D008772 1.3e-166 590.1 413 75.1
LjContig00222g0020502 Lotus japonicus HOM05D007064 ORTHO05D008772 1.7e-166 589.7 402 73.6
Lalb_Chr09g0320151 Lupinus albus HOM05D007064 ORTHO05D008772 1.5e-165 586.6 380 77.9
Medtr5g006230 Medicago truncatula HOM05D007064 ORTHO05D008772 6.3e-161 571.2 369 78.0
TPR.G37970 Trifolium pratense HOM05D007064 ORTHO05D008772 1.1e-160 570.5 401 73.3
QL09p023233 Quercus lobata HOM05D007064 ORTHO05D008772 9.1e-160 567.4 425 68.2
Ca_24438_v3 Cicer arietinum L. HOM05D007064 ORTHO05D008772 7.7e-159 564.3 391 73.4
CSS0020222 Camellia sinensis var. sinensis HOM05D007064 ORTHO05D008772 3.8e-158 562.0 371 73.3
CSS0020425 Camellia sinensis var. sinensis HOM05D007064 ORTHO05D008772 2.5e-157 559.3 371 73.0
CiPaw.05G216200 Carya illinoinensis HOM05D007064 ORTHO05D008772 2.5e-157 559.3 395 70.1
GSVIVG01024376001 Vitis vinifera HOM05D007064 ORTHO05D008772 7.2e-157 557.8 412 67.0
CsaV3_3G050060 Cucumis sativus L. HOM05D007064 ORTHO05D008772 2.3e-155 552.7 411 68.1
Haze_00398 Corylus avellana HOM05D007064 ORTHO05D008772 1.3e-153 547.0 374 72.5
TAR629G0708 Trochodendron aralioides HOM05D007064 ORTHO05D008772 6.3e-153 544.7 374 71.9
MD13G1202900 Malus domestica HOM05D007064 ORTHO05D008772 8.3e-153 544.3 402 69.2
CANSAT78G1989 Cannabis sativa HOM05D007064 ORTHO05D008772 1.1e-152 543.9 386 69.9
FAN12G0288 Fragaria x ananassa HOM05D007064 ORTHO05D008772 1.8e-152 543.1 419 67.5
RcHm_v2.0_Chr4g0388921 Rosa chinensis HOM05D007064 ORTHO05D008772 1.8e-152 543.1 419 66.6
FvH4_4g01950 Fragaria vesca HOM05D007064 ORTHO05D008772 7.0e-152 541.2 390 70.5
Thecc.05G215700 Theobroma cacao HOM05D007064 ORTHO05D008772 1.2e-151 540.4 368 72.0
Cfa016048 Carpinus fangiana HOM05D007064 ORTHO05D008772 1.7e-150 536.6 374 71.7
Nn1g00178 Nelumbo nucifera HOM05D007064 ORTHO05D008772 1.5e-149 533.5 374 68.7
Migut.F00087 Erythranthe guttata HOM05D007064 ORTHO05D008772 2.5e-149 532.7 424 64.6
Actinidia34318 Actinidia chinensis HOM05D007064 ORTHO05D008772 4.3e-149 531.9 393 67.7
Rhsim03G0222700 Rhododendron simsii HOM05D007064 ORTHO05D008772 9.5e-149 530.8 392 67.3
TWI60G0820 Tripterygium wilfordii HOM05D007064 ORTHO05D008772 4.7e-148 528.5 368 70.4
Gohir.A11G303500 Gossypium hirsutum HOM05D007064 ORTHO05D008772 6.1e-148 528.1 423 64.1
EL10Ac3g05060 Beta vulgaris HOM05D007064 ORTHO05D008772 8.0e-148 527.7 378 67.7
Sp6g27320 Schrenkiella parvula HOM05D007064 ORTHO05D008772 1.0e-147 527.3 366 70.8
COL.COLO4_15235 Corchorus olitorius HOM05D007064 ORTHO05D008772 1.5e-146 523.5 387 66.9
Gorai.007G348800 Gossypium raimondii HOM05D007064 ORTHO05D008772 2.0e-146 523.1 417 63.3
Duzib106G1646 Durio zibethinus HOM05D007064 ORTHO05D008772 3.4e-146 522.3 385 67.5
AL6G27830 Arabidopsis lyrata HOM05D007064 ORTHO05D008772 7.5e-146 521.2 366 70.5
Ciclev10020357m.g Citrus clementina HOM05D007064 ORTHO05D008772 7.5e-146 521.2 395 66.6
Atru.chr12.1880 Acer truncatum HOM05D007064 ORTHO05D008772 9.8e-146 520.8 387 68.5
THA.LOC104820893 Tarenaya hassleriana HOM05D007064 ORTHO05D008772 1.7e-145 520.0 386 67.1
Ah.04g156400 Amaranthus hybridus HOM05D007064 ORTHO05D008772 2.2e-145 519.6 376 67.0
BolC2t06775H Brassica oleracea HOM05D007064 ORTHO05D008772 2.9e-145 519.2 366 69.7
AUR62028195 Chenopodium quinoa HOM05D007064 ORTHO05D008772 2.9e-145 519.2 369 68.8
AT5G16810 Arabidopsis thaliana HOM05D007064 ORTHO05D008772 3.7e-145 518.8 366 69.9
Cc02_g00210 Coffea canephora HOM05D007064 ORTHO05D008772 4.9e-145 518.5 375 68.8
Sc19g0000100 Simmondsia chinensis HOM05D007064 ORTHO05D008772 4.9e-145 518.5 374 67.9
BcaC03g18516 Brassica carinata HOM05D007064 ORTHO05D008772 6.4e-145 518.1 366 69.4
C02p08600 Brassica napus HOM05D007064 ORTHO05D008772 6.4e-145 518.1 366 69.4
PSO063G1297 Papaver somniferum HOM05D007064 ORTHO05D008772 8.3e-145 517.7 375 66.7
Thhalv10013656m.g Eutrema salsugineum HOM05D007064 ORTHO05D008772 1.1e-144 517.3 366 70.2
Sabra19G0062000 Salix brachista HOM05D007064 ORTHO05D008772 7.0e-144 514.6 391 68.0
Hund09801 Selenicereus undatus HOM05D007064 ORTHO05D000105 1.6e-143 513.5 366 68.9
PGSC0003DMG400003147 Solanum tuberosum HOM05D007064 ORTHO05D008772 1.6e-143 513.5 370 67.6
Aqoxy3G02225 Aquilegia oxysepala HOM05D007064 ORTHO05D008772 3.5e-143 512.3 369 68.6
CAN.G1131.22 Capsicum annuum HOM05D007064 ORTHO05D008772 4.6e-143 511.9 367 67.3
Nitab4.5_0000021g0660 Nicotiana tabacum HOM05D007064 ORTHO05D008772 4.6e-143 511.9 370 66.8
Nitab4.5_0004530g0030 Nicotiana tabacum HOM05D007064 ORTHO05D008772 4.6e-143 511.9 370 66.5
Solyc03g097130.3 Solanum lycopersicum HOM05D007064 ORTHO05D008772 5.9e-143 511.5 370 67.6
PSO782G0881 Papaver somniferum HOM05D007064 ORTHO05D008772 5.0e-142 508.4 375 66.1
SGA_v2.0_scaffold44G16901 Striga asiatica HOM05D007064 ORTHO05D008772 6.6e-142 508.1 364 67.9
ClCG09G013090 Citrullus lanatus HOM05D007064 ORTHO05D008772 2.8e-140 502.7 385 66.5
HanXRQChr14g0451581 Helianthus annuus HOM05D007064 ORTHO05D008772 5.2e-139 498.4 368 65.5
BraA02t05344Z Brassica rapa HOM05D007064 ORTHO05D008772 3.4e-138 495.7 372 66.4
BcaNung04953 Brassica carinata HOM05D007064 ORTHO05D008772 2.2e-137 493.0 366 66.9
ECA238G0775 Erigeron canadensis HOM05D007064 ORTHO05D008772 4.9e-137 491.9 397 62.7
TWI60G1094 Tripterygium wilfordii HOM05D007064 ORTHO05D008772 1.9e-136 490.0 344 70.1
A02p03790 Brassica napus HOM05D007064 ORTHO05D008772 9.2e-136 487.6 374 65.2
Gohir.D11G318800 Gossypium hirsutum HOM05D007064 ORTHO05D008772 9.2e-136 487.6 343 68.5
AUR62002078 Chenopodium quinoa HOM05D007064 ORTHO05D008772 1.2e-135 487.3 376 64.9
Lsat_1_v5_gn_2_95061 Lactuca sativa HOM05D007064 ORTHO05D008772 6.2e-132 474.9 362 64.6
Os02g0694800 Oryza sativa ssp. japonica HOM05D007064 ORTHO05D008772 4.0e-131 472.2 386 61.9
ATR0829G191 Amborella trichopoda HOM05D007064 ORTHO05D008772 6.8e-131 471.5 384 60.4
Aa31LG11G12770 Aethionema arabicum HOM05D007064 ORTHO05D008772 1.5e-130 470.3 398 61.6
Glyma.01G233100 Glycine max HOM05D007064 ORTHO05D008772 3.4e-130 469.2 321 76.6
SalBow4G1574 Salvia bowleyana HOM05D007064 ORTHO05D008772 5.8e-130 468.4 374 63.6
Zm00001eb187800 Zea mays HOM05D007064 ORTHO05D008772 1.7e-129 466.8 376 60.9
SalBow4G1678 Salvia bowleyana HOM05D007064 ORTHO05D008772 1.9e-128 463.4 380 62.9
Prupe.1G025200 Prunus persica HOM05D007064 ORTHO05D008772 4.1e-128 462.2 342 67.5
MELO3C003312.2 Cucumis melo HOM05D007064 ORTHO05D008772 1.0e-126 457.6 320 70.0
Psat2g189080 Pisum sativum HOM05D007064 ORTHO05D008772 9.5e-125 451.1 339 68.1
HPP92_025673 Vanilla planifolia HOM05D007064 ORTHO05D008772 1.3e-121 440.7 375 61.1
Lj1A1033T73 Lonicera japonica HOM05D007064 ORTHO05D008772 2.2e-121 439.9 311 69.8
Dinv17250 Davidia involucrata HOM05D007064 ORTHO05D008772 2.9e-121 439.5 321 68.5
SEGI_11081 Sequoiadendron giganteum HOM05D007064 ORTHO05D008772 8.4e-121 438.0 392 57.7
Peaxi162Scf00516g00675 Petunia axillaris HOM05D007064 ORTHO05D008772 2.4e-120 436.4 367 60.5
Sed0013285 Sechium edule HOM05D007064 ORTHO05D008772 5.4e-120 435.3 293 72.7
CDE11G0292 Ceratophyllum demersum HOM05D007064 ORTHO05D008772 7.8e-119 431.4 369 57.7
Hma1.2p1_0649F.1_g195260 Hydrangea macrophylla HOM05D007064 ORTHO05D008772 5.8e-114 415.2 281 72.2
Potri.019G050500 Populus trichocarpa HOM05D007064 ORTHO05D008772 1.5e-109 400.6 332 63.9
Eucgr.K00080 Eucalyptus grandis HOM05D007064 ORTHO05D008772 2.5e-109 399.8 270 71.5
Manes.09G127400 Manihot esculenta HOM05D007064 ORTHO05D008772 4.3e-109 399.1 313 66.1
Carub.0006s1503 Capsella rubella HOM05D007064 ORTHO05D008772 9.6e-109 397.9 276 72.5
vmacro06523 Vaccinium macrocarpon HOM05D007064 ORTHO05D008772 4.8e-108 395.6 419 51.6
Sopen03g027870 Solanum pennellii HOM05D007064 ORTHO05D008772 2.4e-107 393.3 281 68.0
Pp3c23_10770 Physcomitrium patens HOM05D007064 ORTHO05D008772 5.3e-99 365.5 416 48.8
Mapoly0096s0061 Marchantia polymorpha HOM05D007064 ORTHO05D008772 2.9e-97 359.8 400 49.2
CARHR196350 Cardamine hirsuta HOM05D007064 ORTHO05D008772 8.4e-97 358.2 270 65.6
Oeu038089.3 Olea europaea HOM05D007064 ORTHO05D008772 2.2e-89 333.6 391 47.8
AagrBONN_evm.TU.Sc2ySwM_344.2887 Anthoceros agrestis HOM05D007064 ORTHO05D008772 6.9e-67 258.8 335 44.2
SMO343G0012 Selaginella moellendorffii HOM05D007064 ORTHO05D008772 2.2e-52 210.7 394 37.1
Cpa.g.sc43.97 Carica papaya HOM05D007064 ORTHO05D008772 1.2e-45 188.3 150 63.3
Psat0s4094g0040 Pisum sativum HOM05D007064 ORTHO05D008772 7.5e-45 185.7 107 83.2
CBR_g8898 Chara braunii HOM05D007064 ORTHO05D008772 1.2e-42 178.3 126 65.1
CBR_g8900 Chara braunii HOM05D007064 ORTHO05D000002 2.4e-35 154.1 212 42.5
Cpa.g.sc43.98 Carica papaya HOM05D007064 ORTHO05D008772 2.0e-29 134.4 72 88.9
Oeu043948.1 Olea europaea HOM05D007064 ORTHO05D008772 2.7e-26 124.0 68 86.8
TPR.G40530 Trifolium pratense HOM05D007064 ORTHO05D008772 3.1e-22 110.5 55 92.7
Lj1A1033G66 Lonicera japonica HOM05D007064 ORTHO05D008772 1.9e-19 101.3 55 85.5
HanXRQChr01g0005821 Helianthus annuus HOM05D007064 ORTHO05D008772 3.6e-15 87.0 70 57.1
PRCOL_00004348 Prasinoderma coloniale HOM05D007064 ORTHO05D008772 7.1e-11 72.8 249 26.5
CBR_g6359 Chara braunii HOM05D007064 ORTHO05D008772 2.5e-08 64.3 96 38.5
MCO05G602 Micromonas commoda HOM05D007064 ORTHO05D008772 1.8e-06 58.2 198 25.3
Pp3c26_5140 Physcomitrium patens HOM05D002406 ORTHO05D007964 3.1e-06 57.4 266 24.8
SMO364G0095 Selaginella moellendorffii HOM05D002406 ORTHO05D007964 3.1e-06 57.4 250 26.4
SGA_v2.0_scaffold14G06823 Striga asiatica HOM05D002406 ORTHO05D007964 4.0e-06 57.0 258 26.4
Duzib251G0875 Durio zibethinus HOM05D002406 ORTHO05D007964 5.2e-06 56.6 256 26.2


User provided reference genes

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