Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G006100 Glycine max HOM05D007633 ORTHO05D008817 1.4e-145 519.6 265 100.0
Glyma.01G237200 Glycine max HOM05D007633 ORTHO05D008817 2.1e-101 372.9 264 76.5
Phvul.002G044600 Phaseolus vulgaris HOM05D007633 ORTHO05D008817 1.2e-91 340.5 262 69.1
Psat4g209480 Pisum sativum HOM05D007633 ORTHO05D008817 2.7e-88 329.3 298 63.1
LjContig00408g0001251 Lotus japonicus HOM05D007633 ORTHO05D008817 1.0e-87 327.4 274 65.7
Medtr5g006410 Medicago truncatula HOM05D007633 ORTHO05D008817 1.1e-81 307.4 272 60.3
TPR.G38043 Trifolium pratense HOM05D007633 ORTHO05D008817 1.3e-79 300.4 281 60.1
Lalb_Chr01g0013131 Lupinus albus HOM05D007633 ORTHO05D008817 2.3e-79 299.7 265 62.3
Ca_24403_v3 Cicer arietinum L. HOM05D007633 ORTHO05D008817 4.7e-77 292.0 279 61.3
VMungo1215G1793 Vigna mungo HOM05D007633 ORTHO05D008817 3.1e-76 289.3 279 62.0
VMungo1215G1192 Vigna mungo HOM05D007633 ORTHO05D008817 1.2e-69 267.3 282 58.2
Cfa015662 Carpinus fangiana HOM05D007633 ORTHO05D008817 3.6e-61 239.2 265 50.6
Haze_00885 Corylus avellana HOM05D007633 ORTHO05D008817 1.8e-60 236.9 267 49.4
Atru.chr4.2449 Acer truncatum HOM05D007633 ORTHO05D008817 1.3e-58 230.7 262 48.1
RcHm_v2.0_Chr4g0415951 Rosa chinensis HOM05D007633 ORTHO05D008817 2.2e-58 229.9 264 48.5
Potri.010G086300 Populus trichocarpa HOM05D007633 ORTHO05D008817 3.2e-57 226.1 259 50.2
Potri.008G154200 Populus trichocarpa HOM05D007633 ORTHO05D008817 9.2e-57 224.6 261 49.4
QL06p002095 Quercus lobata HOM05D007633 ORTHO05D008817 3.5e-56 222.6 240 51.2
FAN02G3335 Fragaria x ananassa HOM05D007633 ORTHO05D008817 6.0e-56 221.9 268 47.8
Ciclev10005651m.g Citrus clementina HOM05D007633 ORTHO05D008817 1.0e-55 221.1 263 50.6
FAN22G0362 Fragaria x ananassa HOM05D007633 ORTHO05D008817 8.7e-55 218.0 268 47.4
Hma1.2p1_0745F.1_g212150 Hydrangea macrophylla HOM05D007633 ORTHO05D008817 3.3e-54 216.1 261 47.5
Thecc.04G233700 Theobroma cacao HOM05D007633 ORTHO05D008817 3.3e-54 216.1 253 48.6
Manes.03G177200 Manihot esculenta HOM05D007633 ORTHO05D008817 2.1e-53 213.4 257 46.3
CSS0018565 Camellia sinensis var. sinensis HOM05D007633 ORTHO05D008817 8.1e-53 211.5 254 46.1
MELO3C006526.2 Cucumis melo HOM05D007633 ORTHO05D008817 1.4e-52 210.7 262 47.7
CANSAT78G1135 Cannabis sativa HOM05D007633 ORTHO05D008817 2.0e-51 206.8 267 47.2
CsaV3_3G013230 Cucumis sativus L. HOM05D007633 ORTHO05D008817 3.4e-51 206.1 260 46.9
Sabra10G0057400 Salix brachista HOM05D007633 ORTHO05D008817 5.8e-51 205.3 246 49.2
FvH4_4g16290 Fragaria vesca HOM05D007633 ORTHO05D008817 4.9e-50 202.2 268 44.8
FAN12G0707 Fragaria x ananassa HOM05D007633 ORTHO05D008817 4.9e-50 202.2 268 44.8
arahy.Tifrunner.gnm1.ann1.5LNY8Z Arachis hypogaea HOM05D007633 ORTHO05D008817 2.4e-49 199.9 190 58.9
Gohir.A09G053600 Gossypium hirsutum HOM05D007633 ORTHO05D008817 9.3e-49 198.0 261 46.7
Prupe.1G015500 Prunus persica HOM05D007633 ORTHO05D008817 4.6e-48 195.7 161 61.5
arahy.Tifrunner.gnm1.ann1.VQRK5I Arachis hypogaea HOM05D007633 ORTHO05D008817 2.3e-47 193.4 189 57.7
Dinv14003 Davidia involucrata HOM05D007633 ORTHO05D008817 2.3e-47 193.4 238 47.1
GSVIVG01017995001 Vitis vinifera HOM05D007633 ORTHO05D008817 3.9e-47 192.6 258 46.1
Actinidia36954 Actinidia chinensis HOM05D007633 ORTHO05D008817 1.9e-46 190.3 261 41.0
Gorai.006G055000 Gossypium raimondii HOM05D007633 ORTHO05D008817 2.5e-46 189.9 267 45.7
Gohir.D09G053050 Gossypium hirsutum HOM05D007633 ORTHO05D008817 7.3e-46 188.3 261 46.0
PGR004G0463 Punica granatum HOM05D007633 ORTHO05D008817 7.3e-46 188.3 232 47.4
MD16G1195500 Malus domestica HOM05D007633 ORTHO05D008817 9.6e-46 188.0 245 46.9
Sed0010969 Sechium edule HOM05D007633 ORTHO05D008817 4.8e-45 185.7 231 46.3
Eucgr.H03451 Eucalyptus grandis HOM05D007633 ORTHO05D008817 6.2e-45 185.3 266 42.5
Nn1g02349 Nelumbo nucifera HOM05D007633 ORTHO05D008817 1.4e-44 184.1 259 41.7
Aqoxy2G03409 Aquilegia oxysepala HOM05D007633 ORTHO05D008817 6.9e-44 181.8 244 41.8
TWI73G0352 Tripterygium wilfordii HOM05D007633 ORTHO05D008817 6.9e-44 181.8 255 43.5
Oeu011618.1 Olea europaea HOM05D007633 ORTHO05D008817 3.4e-43 179.5 242 40.9
TAR636G0739 Trochodendron aralioides HOM05D007633 ORTHO05D008817 4.5e-43 179.1 262 41.2
Rhsim02G0025900 Rhododendron simsii HOM05D007633 ORTHO05D008817 5.8e-43 178.7 239 42.3
Sc19g0004060 Simmondsia chinensis HOM05D005574 ORTHO05D007102 1.4e-41 174.1 254 44.1
Duzib212G0599 Durio zibethinus HOM05D007633 ORTHO05D008817 8.7e-39 164.9 192 51.6
Cc03_g03920 Coffea canephora HOM05D007633 ORTHO05D008817 2.4e-36 156.8 261 39.8
HanXRQChr02g0035611 Helianthus annuus HOM05D007633 ORTHO05D008817 1.2e-35 154.5 258 38.8
Solyc09g082160.4 Solanum lycopersicum HOM05D007633 ORTHO05D008817 3.4e-35 152.9 249 37.8
MSTRG.21860 Avicennia marina HOM05D007633 ORTHO05D008817 5.8e-35 152.1 246 40.7
Sopen09g031040 Solanum pennellii HOM05D007633 ORTHO05D008817 3.8e-34 149.4 249 37.3
PGSC0003DMG400032254 Solanum tuberosum HOM05D007633 ORTHO05D008817 1.1e-33 147.9 249 36.5
Peaxi162Scf00192g01119 Petunia axillaris HOM05D007633 ORTHO05D008817 2.5e-33 146.7 255 36.9
FAN07G1430 Fragaria x ananassa HOM05D007633 ORTHO05D008817 5.5e-33 145.6 202 43.6
Nitab4.5_0001342g0010 Nicotiana tabacum HOM05D007633 ORTHO05D008817 7.1e-33 145.2 249 36.5
Migut.N00191 Erythranthe guttata HOM05D007633 ORTHO05D008817 2.1e-32 143.7 231 37.2
Nitab4.5_0008118g0020 Nicotiana tabacum HOM05D007633 ORTHO05D008817 6.0e-32 142.1 256 34.0
vmacro15349 Vaccinium macrocarpon HOM05D007633 ORTHO05D008817 3.9e-31 139.4 243 34.6
ATR0697G107 Amborella trichopoda HOM05D007633 ORTHO05D008817 1.1e-30 137.9 247 36.8
CiPaw.01G167500 Carya illinoinensis HOM05D007633 ORTHO05D008817 1.5e-30 137.5 259 36.7
Lsat_1_v5_gn_7_64401 Lactuca sativa HOM05D007633 ORTHO05D008817 1.9e-30 137.1 223 38.6
ECA240G3784 Erigeron canadensis HOM05D000137 ORTHO05D000452 4.3e-30 136.0 163 44.2
Sopen06g019290 Solanum pennellii HOM05D007633 ORTHO05D008817 7.4e-30 135.2 158 43.0
Peaxi162Scf00092g00615 Petunia axillaris HOM05D007633 ORTHO05D008817 1.1e-28 131.3 265 34.3
PSO761G0330 Papaver somniferum HOM05D007633 ORTHO05D008817 6.9e-28 128.6 245 36.7
ClCG05G005110 Citrullus lanatus HOM05D007633 ORTHO05D008817 2.0e-27 127.1 253 38.7
PSO210G0191 Papaver somniferum HOM05D007633 ORTHO05D008817 3.4e-27 126.3 258 36.4
HPP92_006116 Vanilla planifolia HOM05D007633 ORTHO05D008817 3.4e-27 126.3 264 34.5
PSO761G0485 Papaver somniferum HOM05D007633 ORTHO05D008817 5.8e-27 125.6 247 33.2
Solyc06g054140.4 Solanum lycopersicum HOM05D007633 ORTHO05D008817 2.9e-26 123.2 158 39.9
Hund12119 Selenicereus undatus HOM05D007633 ORTHO05D008817 1.9e-25 120.6 225 34.7
PSO210G6592 Papaver somniferum HOM05D007633 ORTHO05D008817 9.3e-25 118.2 247 33.2
Ah.04g154590 Amaranthus hybridus HOM05D007633 ORTHO05D008817 6.7e-23 112.1 258 33.7
CDE07G1037 Ceratophyllum demersum HOM05D007633 ORTHO05D008817 8.7e-23 111.7 157 38.9
SalBow3G0862 Salvia bowleyana HOM05D007633 ORTHO05D008817 4.3e-22 109.4 255 32.5
Lsat_1_v5_gn_8_155361 Lactuca sativa HOM05D007633 ORTHO05D008817 2.8e-21 106.7 131 45.0
Nitab4.5_0000321g0150 Nicotiana tabacum HOM05D007633 ORTHO05D008817 3.7e-21 106.3 253 30.4
AUR62034710 Chenopodium quinoa HOM05D007633 ORTHO05D008817 1.4e-20 104.4 183 39.3
Nitab4.5_0001920g0040 Nicotiana tabacum HOM05D007633 ORTHO05D008817 1.8e-20 104.0 199 34.2
AUR62043551 Chenopodium quinoa HOM05D007633 ORTHO05D008817 9.4e-17 91.7 196 33.2
Sp1g04300 Schrenkiella parvula HOM05D012198 ORTHO05D008817 6.7e-15 85.5 260 31.5
MD13G1194600 Malus domestica HOM05D007633 ORTHO05D008817 1.1e-14 84.7 157 36.9
EL10Ac3g06495 Beta vulgaris HOM05D007633 ORTHO05D008817 1.5e-14 84.3 251 29.5
Aa31LG1G19200 Aethionema arabicum HOM05D005574 ORTHO05D007102 2.5e-14 83.6 249 28.1
AL1G15270 Arabidopsis lyrata HOM05D012198 ORTHO05D008817 5.7e-14 82.4 229 32.3
AT1G05430 Arabidopsis thaliana HOM05D012198 ORTHO05D008817 7.4e-14 82.0 236 34.7
PGSC0003DMG400016306 Solanum tuberosum HOM05D007633 ORTHO05D008817 2.2e-13 80.5 103 43.7
Carub.0001s0476 Capsella rubella HOM05D012198 ORTHO05D008817 1.4e-12 77.8 262 31.7
Thhalv10008449m.g Eutrema salsugineum HOM05D012198 ORTHO05D008817 1.4e-12 77.8 274 29.9
BcaB02g06861 Brassica carinata HOM05D012198 ORTHO05D008817 2.4e-12 77.0 226 29.6
THA.LOC104826165 Tarenaya hassleriana HOM05D012198 ORTHO05D008817 2.4e-12 77.0 263 29.3
SEGI_17234 Sequoiadendron giganteum HOM05D007633 ORTHO05D008817 4.1e-12 76.3 189 30.7
A10p04130 Brassica napus HOM05D012198 ORTHO05D008817 6.9e-12 75.5 219 28.8
BraA10t42683Z Brassica rapa HOM05D012198 ORTHO05D008817 6.9e-12 75.5 219 28.8
CARHR205340 Cardamine hirsuta HOM05D012198 ORTHO05D008817 9.1e-12 75.1 272 28.7
BcaC05g24387 Brassica carinata HOM05D012198 ORTHO05D008817 1.0e-10 71.6 217 28.6
Lalb_Chr01g0013111 Lupinus albus HOM05D007633 ORTHO05D008817 1.7e-10 70.9 65 61.5
Sabra08G0117600 Salix brachista HOM05D007633 ORTHO05D008817 6.5e-10 68.9 72 52.8
TWI73G0180 Tripterygium wilfordii HOM05D007633 ORTHO05D008817 8.5e-10 68.6 100 39.0
C05p03770 Brassica napus HOM05D012198 ORTHO05D008817 1.1e-09 68.2 217 27.6
BolC5t29154H Brassica oleracea HOM05D012198 ORTHO05D008817 1.1e-09 68.2 217 27.6
BcaC05g24389 Brassica carinata HOM05D012198 ORTHO05D008817 5.5e-09 65.9 134 33.6
MD13G1194800 Malus domestica HOM05D007633 ORTHO05D008817 3.6e-08 63.2 50 64.0
Cpa.g.sc58.92 Carica papaya HOM05D000003 ORTHO05D000004 6.7e-07 58.9 52 53.8
MD07G1251800 Malus domestica HOM05D007633 ORTHO05D008817 3.3e-06 56.6 74 44.6


User provided reference genes

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