Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G001366 Glycine max HOM05D000907 ORTHO05D214797 2.6e-40 168.3 89 100.0
arahy.Tifrunner.gnm1.ann1.L9U5I9 Arachis hypogaea HOM05D000907 ORTHO05D000753 1.3e-10 69.7 42 83.3
arahy.Tifrunner.gnm1.ann1.QGW2TM Arachis hypogaea HOM05D000907 ORTHO05D000753 1.3e-10 69.7 42 83.3
Lalb_Chr16g0376271 Lupinus albus HOM05D000907 ORTHO05D000753 1.7e-10 69.3 43 81.4
Phvul.002G052400 Phaseolus vulgaris HOM05D000907 ORTHO05D000753 2.2e-10 68.9 42 85.7
Lj1g0006493 Lotus japonicus HOM05D000907 ORTHO05D000753 2.8e-10 68.6 43 81.4
VMungo1215G1903 Vigna mungo HOM05D000907 ORTHO05D000753 2.8e-10 68.6 42 83.3
Glyma.01G243100 Glycine max HOM05D000907 ORTHO05D000753 8.3e-10 67.0 41 82.9
GSVIVG01037860001 Vitis vinifera HOM05D000907 ORTHO05D000753 8.3e-10 67.0 46 73.9
ATR0030G013 Amborella trichopoda HOM05D000907 ORTHO05D000753 2.4e-09 65.5 46 73.9
Ca_24351_v3 Cicer arietinum L. HOM05D000907 ORTHO05D000753 2.4e-09 65.5 42 81.0
Dinv42221 Davidia involucrata HOM05D000907 ORTHO05D000753 2.4e-09 65.5 43 74.4
Peaxi162Scf00003g02636 Petunia axillaris HOM05D000907 ORTHO05D000753 3.1e-09 65.1 43 74.4
Potri.001G296100 Populus trichocarpa HOM05D000907 ORTHO05D000753 3.1e-09 65.1 43 76.7
Thecc.02G114100 Theobroma cacao HOM05D000907 ORTHO05D000753 4.1e-09 64.7 46 73.9
Duzib052G0696 Durio zibethinus HOM05D000907 ORTHO05D000753 5.4e-09 64.3 42 78.6
Nitab4.5_0012285g0020 Nicotiana tabacum HOM05D000907 ORTHO05D000753 5.4e-09 64.3 43 72.1
Potri.009G090300 Populus trichocarpa HOM05D000907 ORTHO05D000753 5.4e-09 64.3 43 74.4
Sabra16G0185100 Salix brachista HOM05D000907 ORTHO05D000753 5.4e-09 64.3 46 71.7
MD05G1096900 Malus domestica HOM05D000907 ORTHO05D000753 7.0e-09 63.9 46 71.7
Psat4g227960 Pisum sativum HOM05D000907 ORTHO05D000753 7.0e-09 63.9 42 76.2
Prupe.8G141300 Prunus persica HOM05D000907 ORTHO05D000753 7.0e-09 63.9 46 71.7
TWI23G1287 Tripterygium wilfordii HOM05D000907 ORTHO05D000753 7.0e-09 63.9 42 76.2
Manes.10G081200 Manihot esculenta HOM05D000907 ORTHO05D000753 9.2e-09 63.5 46 69.6
RhsimUnG0125500 Rhododendron simsii HOM05D000907 ORTHO05D000753 9.2e-09 63.5 42 76.2
CSS0010261 Camellia sinensis var. sinensis HOM05D000907 ORTHO05D000753 1.2e-08 63.2 42 73.8
Hma1.2p1_1023F.1_g248910 Hydrangea macrophylla HOM05D000907 ORTHO05D000753 1.2e-08 63.2 42 73.8
Cfa004648 Carpinus fangiana HOM05D000907 ORTHO05D000753 1.6e-08 62.8 41 78.0
ClCG02G006710 Citrullus lanatus HOM05D000907 ORTHO05D000753 1.6e-08 62.8 42 76.2
Ciclev10028240m.g Citrus clementina HOM05D000907 ORTHO05D000753 1.6e-08 62.8 42 76.2
Lj9A326T78 Lonicera japonica HOM05D000907 ORTHO05D000753 1.6e-08 62.8 43 69.8
Rhsim11G0154300 Rhododendron simsii HOM05D000907 ORTHO05D000753 1.6e-08 62.8 42 76.2
TAR381G1319 Trochodendron aralioides HOM05D000907 ORTHO05D000753 2.0e-08 62.4 42 73.8
vmacro01972 Vaccinium macrocarpon HOM05D000907 ORTHO05D000753 2.0e-08 62.4 42 73.8
Haze_10246 Corylus avellana HOM05D000907 ORTHO05D000753 2.7e-08 62.0 41 78.0
Duzib248G0962 Durio zibethinus HOM05D000907 ORTHO05D000753 2.7e-08 62.0 47 68.1
Manes.07G063214 Manihot esculenta HOM05D000907 ORTHO05D000753 2.7e-08 62.0 43 72.1
Nitab4.5_0001259g0090 Nicotiana tabacum HOM05D000907 ORTHO05D000753 2.7e-08 62.0 43 69.8
Atru.chr5.2406 Acer truncatum HOM05D000907 ORTHO05D000753 3.5e-08 61.6 42 76.2
Cpa.g.sc106.75 Carica papaya HOM05D000907 ORTHO05D000753 3.5e-08 61.6 43 72.1
MELO3C018511.2 Cucumis melo HOM05D000907 ORTHO05D000753 3.5e-08 61.6 42 73.8
FvH4_2g03970 Fragaria vesca HOM05D000907 ORTHO05D000753 4.5e-08 61.2 42 73.8
FAN15G3557 Fragaria x ananassa HOM05D000907 ORTHO05D000753 4.5e-08 61.2 42 73.8
FAN20G3049 Fragaria x ananassa HOM05D000907 ORTHO05D000753 4.5e-08 61.2 42 73.8
FAN24G1180 Fragaria x ananassa HOM05D000907 ORTHO05D000753 4.5e-08 61.2 42 73.8
RcHm_v2.0_Chr6g0253031 Rosa chinensis HOM05D000907 ORTHO05D000753 4.5e-08 61.2 42 73.8
Aqoxy7G03112 Aquilegia oxysepala HOM05D000907 ORTHO05D000753 5.9e-08 60.8 42 73.8
CANSAT25G1678 Cannabis sativa HOM05D000907 ORTHO05D000753 5.9e-08 60.8 42 73.8
CAN.G407.3 Capsicum annuum HOM05D000907 ORTHO05D000753 5.9e-08 60.8 42 71.4
CsaV3_7G007920 Cucumis sativus L. HOM05D000907 ORTHO05D000753 5.9e-08 60.8 46 69.6
Gohir.A04G118900 Gossypium hirsutum HOM05D000907 ORTHO05D000753 5.9e-08 60.8 42 73.8
Gohir.D04G160600 Gossypium hirsutum HOM05D000907 ORTHO05D000753 5.9e-08 60.8 42 73.8
Gorai.012G148400 Gossypium raimondii HOM05D000907 ORTHO05D000753 5.9e-08 60.8 42 73.8
HanXRQChr03g0070001 Helianthus annuus HOM05D000907 ORTHO05D000753 5.9e-08 60.8 42 71.4
Sed0024878 Sechium edule HOM05D000907 ORTHO05D000753 5.9e-08 60.8 42 73.8
PGSC0003DMG400005455 Solanum tuberosum HOM05D000907 ORTHO05D000753 5.9e-08 60.8 42 71.4
unitig_0.g106 Utricularia gibba HOM05D000907 ORTHO05D000753 5.9e-08 60.8 44 68.2
DCAR_021962 Daucus carota HOM05D000907 ORTHO05D000753 7.8e-08 60.5 46 65.2
Eucgr.G01271 Eucalyptus grandis HOM05D000907 ORTHO05D000753 7.8e-08 60.5 42 73.8
PSO541G1990 Papaver somniferum HOM05D000907 ORTHO05D000753 7.8e-08 60.5 42 73.8
PSO675G6344 Papaver somniferum HOM05D000907 ORTHO05D000753 7.8e-08 60.5 42 73.8
Actinidia00385 Actinidia chinensis HOM05D000907 ORTHO05D000753 1.0e-07 60.1 42 71.4
CiPaw.05G016000 Carya illinoinensis HOM05D000907 ORTHO05D000753 1.0e-07 60.1 43 72.1
PGR042G0767 Punica granatum HOM05D000907 ORTHO05D000753 1.0e-07 60.1 42 71.4
Medtr5g005160 Medicago truncatula HOM05D000907 ORTHO05D000753 1.3e-07 59.7 42 73.8
QL11p031756 Quercus lobata HOM05D000907 ORTHO05D000753 1.3e-07 59.7 41 75.6
Solyc10g049640.2 Solanum lycopersicum HOM05D000907 ORTHO05D000753 1.3e-07 59.7 42 69.0
Sopen10g020890 Solanum pennellii HOM05D000907 ORTHO05D000753 1.3e-07 59.7 42 69.0
Dinv15794 Davidia involucrata HOM05D000907 ORTHO05D000753 1.7e-07 59.3 43 67.4
Sed0011566 Sechium edule HOM05D000907 ORTHO05D000753 1.7e-07 59.3 42 66.7
COL.COLO4_32539 Corchorus olitorius HOM05D000907 ORTHO05D000753 2.3e-07 58.9 46 69.6
Cc02_g19660 Coffea canephora HOM05D000907 ORTHO05D000753 2.9e-07 58.5 43 67.4
ECA240G1462 Erigeron canadensis HOM05D000907 ORTHO05D000753 2.9e-07 58.5 42 69.0
Migut.B00425 Erythranthe guttata HOM05D000907 ORTHO05D000753 2.9e-07 58.5 44 68.2
Nn5g30534 Nelumbo nucifera HOM05D000907 ORTHO05D000753 2.9e-07 58.5 42 71.4
BraA01t03594Z Brassica rapa HOM05D000907 ORTHO05D000753 3.9e-07 58.2 42 69.0
Lsat_1_v5_gn_9_111560 Lactuca sativa HOM05D000907 ORTHO05D000753 5.0e-07 57.8 42 66.7
Aa31LG8G6300 Aethionema arabicum HOM05D000907 ORTHO05D000753 6.6e-07 57.4 46 60.9
MSTRG.20210 Avicennia marina HOM05D000907 ORTHO05D000753 6.6e-07 57.4 40 67.5
Carub.0003s1939 Capsella rubella HOM05D000907 ORTHO05D000753 6.6e-07 57.4 42 66.7
BcaB04g20695 Brassica carinata HOM05D000907 ORTHO05D000753 8.6e-07 57.0 42 66.7
BcaC09g48921 Brassica carinata HOM05D000907 ORTHO05D000753 8.6e-07 57.0 42 66.7
A01p35120 Brassica napus HOM05D000907 ORTHO05D000753 8.6e-07 57.0 42 66.7
C01p44550 Brassica napus HOM05D000907 ORTHO05D000753 8.6e-07 57.0 42 66.7
BolC1t04421H Brassica oleracea HOM05D000907 ORTHO05D000753 8.6e-07 57.0 42 66.7
Thhalv10020631m.g Eutrema salsugineum HOM05D000907 ORTHO05D000753 8.6e-07 57.0 42 66.7
SalBow6G4837 Salvia bowleyana HOM05D000907 ORTHO05D000753 8.6e-07 57.0 44 61.4
Zm00001eb029960 Zea mays HOM05D000907 ORTHO05D000753 8.6e-07 57.0 42 69.0
SMO164G0118 Selaginella moellendorffii HOM05D000907 ORTHO05D000753 1.5e-06 56.2 42 66.7
Hund12611 Selenicereus undatus HOM05D000907 ORTHO05D000753 1.5e-06 56.2 43 62.8
PSO541G4472 Papaver somniferum HOM05D000907 ORTHO05D000753 1.9e-06 55.8 39 71.8
Sp3g17610 Schrenkiella parvula HOM05D000907 ORTHO05D000753 1.9e-06 55.8 42 64.3
THA.LOC104798787 Tarenaya hassleriana HOM05D000907 ORTHO05D000753 1.9e-06 55.8 42 61.9
HPP92_012493 Vanilla planifolia HOM05D000907 ORTHO05D000753 1.9e-06 55.8 44 61.4
A05p30080 Brassica napus HOM05D000907 ORTHO05D000753 2.5e-06 55.5 42 64.3
BraA05t21848Z Brassica rapa HOM05D000907 ORTHO05D000753 2.5e-06 55.5 42 64.3
Os12g0580400 Oryza sativa ssp. japonica HOM05D000907 ORTHO05D000753 2.5e-06 55.5 42 66.7
Sc14g0002560 Simmondsia chinensis HOM05D000907 ORTHO05D000753 2.5e-06 55.5 47 57.4
AL3G32970 Arabidopsis lyrata HOM05D000907 ORTHO05D000753 3.3e-06 55.1 42 64.3
AT3G19553 Arabidopsis thaliana HOM05D000907 ORTHO05D000753 3.3e-06 55.1 42 64.3
CARHR094980 Cardamine hirsuta HOM05D000907 ORTHO05D000753 3.3e-06 55.1 42 64.3
SGA_v2.0_scaffold225G43019 Striga asiatica HOM05D000907 ORTHO05D000753 3.3e-06 55.1 41 63.4
BcaB06g26015 Brassica carinata HOM05D000907 ORTHO05D000753 4.3e-06 54.7 42 61.9
BcaC05g28464 Brassica carinata HOM05D000907 ORTHO05D000753 5.6e-06 54.3 42 64.3
C05p45500 Brassica napus HOM05D000907 ORTHO05D000753 5.6e-06 54.3 42 64.3
BolC5t33273H Brassica oleracea HOM05D000907 ORTHO05D000753 5.6e-06 54.3 42 64.3


User provided reference genes

Program Settings