Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G294300 Glycine max HOM05D003984 ORTHO05D004740 8.7e-148 526.9 266 100.0
Glyma.20G244200 Glycine max HOM05D003984 ORTHO05D004740 8.8e-140 500.4 266 95.5
VMungo0720G0811 Vigna mungo HOM05D003984 ORTHO05D004740 8.2e-138 493.8 267 94.0
Lj5g0020432 Lotus japonicus HOM05D003984 ORTHO05D004740 1.3e-135 486.5 263 92.4
Phvul.007G005800 Phaseolus vulgaris HOM05D003984 ORTHO05D004740 6.5e-135 484.2 267 92.1
Medtr1g116240 Medicago truncatula HOM05D003984 ORTHO05D004740 2.5e-134 482.3 266 90.6
Psat6g240040 Pisum sativum HOM05D003984 ORTHO05D004740 2.1e-133 479.2 266 89.8
TPR.G10390 Trifolium pratense HOM05D003984 ORTHO05D004740 4.7e-133 478.0 267 90.6
Lalb_Chr21g0307521 Lupinus albus HOM05D003984 ORTHO05D004740 7.0e-129 464.2 273 86.8
Lalb_Chr06g0164371 Lupinus albus HOM05D003984 ORTHO05D004740 1.6e-128 463.0 266 88.3
Lalb_Chr02g0144171 Lupinus albus HOM05D003984 ORTHO05D004740 5.0e-127 458.0 269 87.0
Cfa001574 Carpinus fangiana HOM05D003984 ORTHO05D004740 1.9e-126 456.1 266 84.6
CANSAT56G1305 Cannabis sativa HOM05D003984 ORTHO05D004740 3.2e-126 455.3 267 84.6
QL08p057270 Quercus lobata HOM05D003984 ORTHO05D004740 5.5e-126 454.5 266 85.7
arahy.Tifrunner.gnm1.ann1.V3HSKN Arachis hypogaea HOM05D003984 ORTHO05D004740 4.7e-125 451.4 266 87.6
CiPaw.01G278000 Carya illinoinensis HOM05D003984 ORTHO05D004740 4.0e-124 448.4 267 83.9
Dinv31376 Davidia involucrata HOM05D003984 ORTHO05D004740 2.0e-123 446.0 267 84.6
CSS0011111 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 2.6e-123 445.7 267 85.4
Dinv11820 Davidia involucrata HOM05D003984 ORTHO05D004740 2.6e-123 445.7 267 84.3
Prupe.2G220800 Prunus persica HOM05D003984 ORTHO05D004740 4.4e-123 444.9 267 83.9
MD01G1114200 Malus domestica HOM05D003984 ORTHO05D004740 1.3e-122 443.4 267 83.9
CiPaw.02G177500 Carya illinoinensis HOM05D003984 ORTHO05D004740 1.7e-122 443.0 268 84.3
CSS0025505 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 3.1e-121 438.7 267 82.8
MD07G1182100 Malus domestica HOM05D003984 ORTHO05D004740 4.1e-121 438.3 267 83.1
RcHm_v2.0_Chr1g0364411 Rosa chinensis HOM05D003984 ORTHO05D004740 7.0e-121 437.6 267 82.0
CSS0036351 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 2.7e-120 435.6 267 82.4
COL.COLO4_23777 Corchorus olitorius HOM05D003984 ORTHO05D004740 3.5e-120 435.3 267 82.4
Atru.chr12.610 Acer truncatum HOM05D003984 ORTHO05D004740 7.7e-120 434.1 267 82.0
Actinidia13840 Actinidia chinensis HOM05D003984 ORTHO05D004740 7.7e-120 434.1 262 84.0
Manes.10G040500 Manihot esculenta HOM05D003984 ORTHO05D004740 1.3e-119 433.3 267 83.1
Thecc.10G065000 Theobroma cacao HOM05D003984 ORTHO05D004740 1.3e-119 433.3 267 82.4
GSVIVG01032647001 Vitis vinifera HOM05D003984 ORTHO05D004740 1.7e-119 433.0 267 82.4
Ciclev10032445m.g Citrus clementina HOM05D003984 ORTHO05D004740 3.2e-118 428.7 268 81.3
SGA_v2.0_scaffold62G21447 Striga asiatica HOM05D003984 ORTHO05D004740 3.2e-118 428.7 259 82.6
arahy.Tifrunner.gnm1.ann1.B234YK Arachis hypogaea HOM05D003984 ORTHO05D004740 5.5e-118 427.9 319 73.4
Manes.07G104700 Manihot esculenta HOM05D003984 ORTHO05D004740 7.2e-118 427.6 267 82.0
ClCG09G020350 Citrullus lanatus HOM05D003984 ORTHO05D004740 9.4e-118 427.2 267 81.3
Lj8A94T49 Lonicera japonica HOM05D003984 ORTHO05D004740 1.2e-117 426.8 268 81.7
Potri.008G046000 Populus trichocarpa HOM05D003984 ORTHO05D004740 1.6e-117 426.4 267 82.8
TWI15G0393 Tripterygium wilfordii HOM05D003984 ORTHO05D004740 3.6e-117 425.2 265 82.3
TAR633G2252 Trochodendron aralioides HOM05D003984 ORTHO05D004740 3.6e-117 425.2 267 80.1
Cc09_g02350 Coffea canephora HOM05D003984 ORTHO05D004740 6.1e-117 424.5 264 80.7
MSTRG.27450 Avicennia marina HOM05D003984 ORTHO05D004740 1.0e-116 423.7 267 80.1
Sed0003028 Sechium edule HOM05D003984 ORTHO05D004740 1.0e-116 423.7 267 79.8
CsaV3_5G026080 Cucumis sativus L. HOM05D003984 ORTHO05D004740 1.4e-116 423.3 267 80.1
Ca_11380_v3 Cicer arietinum L. HOM05D003984 ORTHO05D004740 3.0e-116 422.2 274 81.4
CSS0002243 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 1.2e-115 420.2 255 85.5
Nitab4.5_0000830g0100 Nicotiana tabacum HOM05D003984 ORTHO05D004740 1.5e-115 419.9 264 79.9
Nitab4.5_0001248g0030 Nicotiana tabacum HOM05D003984 ORTHO05D004740 1.5e-115 419.9 264 79.5
Rhsim09G0154900 Rhododendron simsii HOM05D003984 ORTHO05D004740 1.5e-115 419.9 250 86.4
Migut.F02015 Erythranthe guttata HOM05D003984 ORTHO05D004740 2.6e-115 419.1 259 81.1
Peaxi162Scf01024g00120 Petunia axillaris HOM05D003984 ORTHO05D004740 3.4e-115 418.7 264 80.3
Solyc04g049710.3 Solanum lycopersicum HOM05D003984 ORTHO05D004740 4.4e-115 418.3 264 79.2
Potri.010G215500 Populus trichocarpa HOM05D003984 ORTHO05D004740 5.7e-115 417.9 269 82.2
Sopen04g019960 Solanum pennellii HOM05D003984 ORTHO05D004740 7.5e-115 417.5 264 79.2
Sabra08G0032300 Salix brachista HOM05D003984 ORTHO05D004740 1.3e-114 416.8 275 80.4
Nn2g10608 Nelumbo nucifera HOM05D003984 ORTHO05D004740 2.2e-114 416.0 269 78.1
FAN06G2832 Fragaria x ananassa HOM05D003984 ORTHO05D004740 2.8e-114 415.6 267 79.4
FAN10G1795 Fragaria x ananassa HOM05D003984 ORTHO05D004740 2.8e-114 415.6 267 79.4
AUR62036011 Chenopodium quinoa HOM05D003984 ORTHO05D004740 3.7e-114 415.2 267 79.8
Gohir.D10G216200 Gossypium hirsutum HOM05D003984 ORTHO05D004740 3.7e-114 415.2 266 78.6
Duzib114G0791 Durio zibethinus HOM05D003984 ORTHO05D004740 4.8e-114 414.8 267 80.9
FAN03G0045 Fragaria x ananassa HOM05D003984 ORTHO05D004740 4.8e-114 414.8 267 79.0
Gorai.011G241800 Gossypium raimondii HOM05D003984 ORTHO05D004740 8.3e-114 414.1 266 78.2
FvH4_7g20520 Fragaria vesca HOM05D003984 ORTHO05D004740 1.4e-113 413.3 267 78.7
Gorai.012G092700 Gossypium raimondii HOM05D003984 ORTHO05D004740 1.8e-113 412.9 267 78.7
Oeu055063.1 Olea europaea HOM05D003984 ORTHO05D004740 3.1e-113 412.1 267 77.9
Gohir.A10G208060 Gossypium hirsutum HOM05D003984 ORTHO05D004740 7.0e-113 411.0 266 78.6
EL10Ac2g03538 Beta vulgaris HOM05D003984 ORTHO05D004740 9.1e-113 410.6 268 78.7
Peaxi162Scf00195g00824 Petunia axillaris HOM05D003984 ORTHO05D004740 2.0e-112 409.5 264 79.2
PGR044G2197 Punica granatum HOM05D003984 ORTHO05D004740 4.5e-112 408.3 261 81.2
Duzib128G0096 Durio zibethinus HOM05D003984 ORTHO05D004740 5.9e-112 407.9 268 80.2
Nn2g12956 Nelumbo nucifera HOM05D003984 ORTHO05D004740 2.2e-111 406.0 268 77.6
Eucgr.J01137 Eucalyptus grandis HOM05D003984 ORTHO05D004740 3.8e-111 405.2 267 78.3
Gohir.A05G343700 Gossypium hirsutum HOM05D003984 ORTHO05D004740 5.0e-111 404.8 267 77.5
Haze_16954 Corylus avellana HOM05D003984 ORTHO05D004740 8.5e-111 404.1 237 83.1
Nitab4.5_0000691g0240 Nicotiana tabacum HOM05D003984 ORTHO05D004740 1.1e-110 403.7 264 77.7
DCAR_019150 Daucus carota HOM05D003984 ORTHO05D004740 1.9e-110 402.9 267 76.8
Hund22456 Selenicereus undatus HOM05D003984 ORTHO05D004740 9.5e-110 400.6 268 78.7
PGSC0003DMG400032551 Solanum tuberosum HOM05D003984 ORTHO05D004740 1.6e-109 399.8 264 76.9
CAN.G186.31 Capsicum annuum HOM05D003984 ORTHO05D004740 2.1e-109 399.4 264 76.5
HanXRQChr12g0367731 Helianthus annuus HOM05D003984 ORTHO05D004740 3.6e-109 398.7 267 75.7
AUR62041612 Chenopodium quinoa HOM05D003984 ORTHO05D004740 8.0e-109 397.5 294 71.8
TAR623G0696 Trochodendron aralioides HOM05D003984 ORTHO05D004740 1.8e-108 396.4 251 79.3
SGA_v2.0_scaffold329G48849 Striga asiatica HOM05D003984 ORTHO05D004740 3.0e-108 395.6 261 77.4
Nitab4.5_0004104g0120 Nicotiana tabacum HOM05D003984 ORTHO05D004740 4.0e-108 395.2 250 79.6
PSO339G2647 Papaver somniferum HOM05D003984 ORTHO05D004740 4.0e-108 395.2 268 74.3
PSO384G2137 Papaver somniferum HOM05D003984 ORTHO05D004740 5.2e-108 394.8 267 76.0
TWI63G0288 Tripterygium wilfordii HOM05D003984 ORTHO05D004740 5.2e-108 394.8 255 79.6
Solyc04g009550.3 Solanum lycopersicum HOM05D003984 ORTHO05D004740 8.8e-108 394.0 264 75.4
Lj1A928T58 Lonicera japonica HOM05D003984 ORTHO05D004740 1.2e-107 393.7 308 69.2
PSO339G0239 Papaver somniferum HOM05D003984 ORTHO05D004740 3.4e-107 392.1 267 75.3
DCAR_015251 Daucus carota HOM05D003984 ORTHO05D004740 1.7e-106 389.8 250 79.2
Ah.10g033080 Amaranthus hybridus HOM05D003984 ORTHO05D004740 2.2e-106 389.4 285 72.6
THA.LOC104825886 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 2.2e-106 389.4 264 75.4
Oeu057248.1 Olea europaea HOM05D003984 ORTHO05D004740 2.8e-106 389.0 254 77.6
Sed0000226 Sechium edule HOM05D003984 ORTHO05D004740 6.3e-106 387.9 265 75.1
Migut.F01787 Erythranthe guttata HOM05D003984 ORTHO05D004740 1.1e-105 387.1 261 75.9
Aqoxy4G03159 Aquilegia oxysepala HOM05D003984 ORTHO05D004740 7.0e-105 384.4 280 72.9
ECA238G2056 Erigeron canadensis HOM05D003984 ORTHO05D004740 8.6e-103 377.5 259 75.3
THA.LOC104824242 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 2.5e-102 375.9 262 74.8
ATR0594G132 Amborella trichopoda HOM05D003984 ORTHO05D004740 3.3e-102 375.6 270 72.6
THA.LOC104810167 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 4.3e-102 375.2 250 76.4
Sabra10G0166500 Salix brachista HOM05D003984 ORTHO05D004740 1.6e-101 373.2 284 72.9
HPP92_019786 Vanilla planifolia HOM05D003984 ORTHO05D004740 2.8e-101 372.5 265 71.3
HPP92_017944 Vanilla planifolia HOM05D003984 ORTHO05D004740 4.7e-101 371.7 266 72.6
CDE09G0608 Ceratophyllum demersum HOM05D003984 ORTHO05D004740 4.0e-100 368.6 268 71.3
Lsat_1_v5_gn_8_21240 Lactuca sativa HOM05D003984 ORTHO05D004740 8.9e-100 367.5 268 71.3
Os11g0102600 Oryza sativa ssp. japonica HOM05D003984 ORTHO05D004740 1.5e-99 366.7 257 72.4
Os12g0102200 Oryza sativa ssp. japonica HOM05D003984 ORTHO05D004740 1.5e-99 366.7 257 72.4
Lsat_1_v5_gn_2_115481 Lactuca sativa HOM05D003984 ORTHO05D004740 4.4e-99 365.2 252 76.2
HanXRQChr07g0200921 Helianthus annuus HOM05D003984 ORTHO05D004740 7.5e-99 364.4 260 73.5
SalBow3G2899 Salvia bowleyana HOM05D003984 ORTHO05D004740 1.4e-97 360.1 256 73.4
Zm00001eb094350 Zea mays HOM05D003984 ORTHO05D004740 1.6e-96 356.7 257 71.6
Aa31sc33G70 Aethionema arabicum HOM05D003984 ORTHO05D004740 1.7e-95 353.2 265 70.6
Lj1C926T5 Lonicera japonica HOM05D003984 ORTHO05D004740 2.5e-94 349.4 268 69.8
BcaC08g44716 Brassica carinata HOM05D003984 ORTHO05D004740 9.5e-94 347.4 262 68.7
Carub.0005s2163 Capsella rubella HOM05D003984 ORTHO05D004740 9.5e-94 347.4 261 68.6
C06p22550 Brassica napus HOM05D003984 ORTHO05D004740 1.2e-93 347.1 262 68.7
Zm00001eb163130 Zea mays HOM05D003984 ORTHO05D004740 2.8e-93 345.9 257 70.8
AL5G36110 Arabidopsis lyrata HOM05D003984 ORTHO05D004740 6.2e-93 344.7 262 68.7
BcaB02g07705 Brassica carinata HOM05D003984 ORTHO05D004740 6.2e-93 344.7 262 69.1
A07p22390 Brassica napus HOM05D003984 ORTHO05D004740 6.2e-93 344.7 262 69.1
AL5G36120 Arabidopsis lyrata HOM05D003984 ORTHO05D004740 1.4e-92 343.6 262 67.6
Sc20g0002240 Simmondsia chinensis HOM05D003984 ORTHO05D004740 1.4e-92 343.6 261 70.1
AT3G55000 Arabidopsis thaliana HOM05D003984 ORTHO05D004740 1.8e-92 343.2 262 69.1
Gohir.D04G082100 Gossypium hirsutum HOM05D003984 ORTHO05D004740 2.3e-92 342.8 227 78.0
HanXRQChr14g0460861 Helianthus annuus HOM05D003984 ORTHO05D004740 3.1e-92 342.4 259 71.4
BolC6t37445H Brassica oleracea HOM05D003984 ORTHO05D004740 4.0e-92 342.0 262 68.3
AT3G55005 Arabidopsis thaliana HOM05D003984 ORTHO05D004740 6.8e-92 341.3 264 67.8
Carub.0005s2162 Capsella rubella HOM05D003984 ORTHO05D004740 1.5e-91 340.1 262 67.9
Sp5g07420 Schrenkiella parvula HOM05D003984 ORTHO05D004740 2.0e-91 339.7 262 67.9
unitig_0.g190 Utricularia gibba HOM05D003984 ORTHO05D004740 3.4e-91 339.0 235 74.5
Thhalv10010647m.g Eutrema salsugineum HOM05D003984 ORTHO05D004740 1.3e-90 337.0 262 67.2
CDE02G0952 Ceratophyllum demersum HOM05D003984 ORTHO05D004740 3.7e-90 335.5 253 69.2
BraA07t29915Z Brassica rapa HOM05D003984 ORTHO05D004740 1.4e-89 333.6 281 64.4
CARHR165000 Cardamine hirsuta HOM05D003984 ORTHO05D004740 2.4e-89 332.8 262 67.2
Sp5g07430 Schrenkiella parvula HOM05D003984 ORTHO05D004740 6.0e-88 328.2 262 67.2
CARHR165010 Cardamine hirsuta HOM05D003984 ORTHO05D004740 4.4e-83 312.0 264 63.6
MELO3C025490.2 Cucumis melo HOM05D003984 ORTHO05D004740 4.4e-83 312.0 199 81.4
BraA09t40255Z Brassica rapa HOM05D003984 ORTHO05D004740 4.9e-82 308.5 262 62.2
C08p30240 Brassica napus HOM05D003984 ORTHO05D004740 8.3e-82 307.8 266 62.8
A09p48020 Brassica napus HOM05D003984 ORTHO05D004740 1.9e-81 306.6 262 62.6
MSTRG.9196 Avicennia marina HOM05D003984 ORTHO05D004740 2.4e-81 306.2 199 79.4
BcaNung04652 Brassica carinata HOM05D003984 ORTHO05D004740 8.6e-79 297.7 266 61.3
Thhalv10010676m.g Eutrema salsugineum HOM05D003984 ORTHO05D004740 8.6e-79 297.7 241 67.6
Sopen04g004710 Solanum pennellii HOM05D003984 ORTHO05D004740 9.5e-78 294.3 198 76.8
BcaB01g00136 Brassica carinata HOM05D003984 ORTHO05D004740 8.1e-77 291.2 263 60.8
BolC8t50631H Brassica oleracea HOM05D003984 ORTHO05D004740 1.2e-75 287.3 262 59.5
Sc20g0002230 Simmondsia chinensis HOM05D003984 ORTHO05D004740 3.2e-73 279.3 191 75.9
FAN01G2342 Fragaria x ananassa HOM05D003984 ORTHO05D004740 2.9e-66 256.1 144 88.2
FAN06G1180 Fragaria x ananassa HOM05D003984 ORTHO05D004740 3.0e-63 246.1 174 73.0
AagrBONN_evm.TU.Sc2ySwM_344.1695 Anthoceros agrestis HOM05D003984 ORTHO05D004740 4.5e-43 179.1 212 52.4
SEGI_35779 Sequoiadendron giganteum HOM05D003984 ORTHO05D004740 2.7e-40 169.9 242 43.8
Actinidia29191 Actinidia chinensis HOM05D003984 ORTHO05D004740 6.7e-39 165.2 121 71.9
Mapoly0066s0078 Marchantia polymorpha HOM05D003984 ORTHO05D004740 3.3e-38 162.9 182 51.1
Pp3c14_5580 Physcomitrium patens HOM05D003984 ORTHO05D004740 1.2e-35 154.5 262 39.3
Cpa.g.sc1.281 Carica papaya HOM05D003984 ORTHO05D004740 3.4e-35 152.9 117 68.4
TAR624G0784 Trochodendron aralioides HOM05D003984 ORTHO05D004740 5.7e-30 135.6 93 72.0
FAN06G2469 Fragaria x ananassa HOM05D003984 ORTHO05D004740 2.2e-29 133.7 74 90.5
CBR_g37750 Chara braunii HOM05D000019 ORTHO05D000002 1.1e-25 121.3 215 40.0
SEGI_13922 Sequoiadendron giganteum HOM05D003984 ORTHO05D004740 1.9e-25 120.6 76 77.6
SMO356G0399 Selaginella moellendorffii HOM05D003984 ORTHO05D004740 3.4e-19 99.8 154 41.6
AUR62035988 Chenopodium quinoa HOM05D003984 ORTHO05D004740 9.4e-17 91.7 92 52.2
CBR_g10977 Chara braunii HOM05D003984 ORTHO05D004740 5.2e-15 85.9 178 33.7
SHI42769 Sapria himalayana HOM05D003984 ORTHO05D004740 1.4e-12 77.8 127 44.9
CSS0046661 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 1.5e-09 67.8 40 82.5
Nn6g33815 Nelumbo nucifera HOM05D003984 ORTHO05D004740 1.9e-09 67.4 41 75.6
HanXRQChr17g0557371 Helianthus annuus HOM05D000549 ORTHO05D004740 2.7e-08 63.5 41 73.2
RcHm_v2.0_Chr2g0140211 Rosa chinensis HOM05D003984 ORTHO05D004740 3.0e-07 60.1 43 65.1
PRCOL_00000040 Prasinoderma coloniale HOM05D003984 ORTHO05D004740 6.7e-07 58.9 137 33.6
MCO05G642 Micromonas commoda HOM05D003984 ORTHO05D004740 2.0e-06 57.4 86 32.6
Sabra18G0026300 Salix brachista HOM05D002732 ORTHO05D002955 5.7e-06 55.8 30 90.0


User provided reference genes

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