Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G286600 Glycine max HOM05D006667 ORTHO05D008387 2.9e-145 519.2 420 100.0
Glyma.20G102500 Glycine max HOM05D006667 ORTHO05D008387 7.1e-128 461.5 420 92.9
VMungo0720G1985 Vigna mungo HOM05D006667 ORTHO05D008387 6.7e-126 454.9 420 87.4
Medtr1g114610 Medicago truncatula HOM05D006667 ORTHO05D008387 9.7e-117 424.5 420 84.3
Lalb_Chr02g0143651 Lupinus albus HOM05D006667 ORTHO05D008387 2.8e-116 422.9 420 84.8
arahy.Tifrunner.gnm1.ann1.IH6UK4 Arachis hypogaea HOM05D006667 ORTHO05D008387 3.1e-115 419.5 407 88.0
Psat6g234200 Pisum sativum HOM05D006667 ORTHO05D008387 1.3e-113 414.1 418 83.0
arahy.Tifrunner.gnm1.ann1.F8B6JQ Arachis hypogaea HOM05D006667 ORTHO05D008387 1.9e-109 400.2 392 88.5
Lj5g0023243 Lotus japonicus HOM05D006667 ORTHO05D008387 9.7e-109 397.9 420 81.2
TPR.G4129 Trifolium pratense HOM05D006667 ORTHO05D008387 2.6e-101 373.2 420 79.0
Actinidia04346 Actinidia chinensis HOM05D006667 ORTHO05D008387 4.8e-100 369.0 409 77.3
Ca_11261_v3 Cicer arietinum L. HOM05D006667 ORTHO05D008387 5.3e-99 365.5 420 80.2
Prupe.1G349400 Prunus persica HOM05D006667 ORTHO05D008387 4.5e-98 362.5 405 76.8
Rhsim12G0089400 Rhododendron simsii HOM05D006667 ORTHO05D008387 5.9e-98 362.1 407 76.2
Sabra05G0073100 Salix brachista HOM05D006667 ORTHO05D008387 9.7e-93 344.7 397 75.3
PGSC0003DMG400011513 Solanum tuberosum HOM05D006667 ORTHO05D008387 9.7e-93 344.7 404 76.5
CANSAT78G2402 Cannabis sativa HOM05D006667 ORTHO05D008387 1.7e-92 344.0 409 77.5
Dinv07500 Davidia involucrata HOM05D006667 ORTHO05D008387 1.7e-92 344.0 405 76.5
FvH4_4g37160 Fragaria vesca HOM05D006667 ORTHO05D008387 2.4e-91 340.1 405 74.8
THA.LOC104819372 Tarenaya hassleriana HOM05D006667 ORTHO05D008387 3.1e-91 339.7 409 76.3
FAN12G3199 Fragaria x ananassa HOM05D006667 ORTHO05D008387 5.3e-91 339.0 405 74.6
RcHm_v2.0_Chr4g0446961 Rosa chinensis HOM05D006667 ORTHO05D008387 1.6e-90 337.4 409 75.1
QL03p045401 Quercus lobata HOM05D006667 ORTHO05D008387 5.9e-90 335.5 406 74.6
TAR622G0133 Trochodendron aralioides HOM05D006667 ORTHO05D008387 5.9e-90 335.5 405 74.8
MELO3C011757.2 Cucumis melo HOM05D006667 ORTHO05D008387 1.3e-89 334.3 421 73.2
Potri.005G088800 Populus trichocarpa HOM05D006667 ORTHO05D008387 1.7e-89 334.0 405 74.1
CsaV3_5G029020 Cucumis sativus L. HOM05D006667 ORTHO05D008387 2.9e-89 333.2 421 72.7
BcaC03g18029 Brassica carinata HOM05D006667 ORTHO05D008387 1.5e-88 330.9 406 73.9
Peaxi162Scf00681g00319 Petunia axillaris HOM05D006667 ORTHO05D008387 1.5e-88 330.9 418 72.2
C02p60910 Brassica napus HOM05D006667 ORTHO05D008387 1.9e-88 330.5 406 73.9
A02p41020 Brassica napus HOM05D006667 ORTHO05D008387 7.2e-88 328.6 406 73.9
AL6G34600 Arabidopsis lyrata HOM05D006667 ORTHO05D008387 1.6e-87 327.4 407 74.7
Lj6A708T61 Lonicera japonica HOM05D006667 ORTHO05D008387 2.1e-87 327.0 407 73.0
Lj6A713T75 Lonicera japonica HOM05D006667 ORTHO05D008387 2.1e-87 327.0 407 73.0
BraA02t09050Z Brassica rapa HOM05D006667 ORTHO05D008387 8.0e-87 325.1 406 73.9
BraA06t26360Z Brassica rapa HOM05D006667 ORTHO05D008387 1.0e-86 324.7 407 74.4
C07p44230 Brassica napus HOM05D006667 ORTHO05D008387 5.2e-86 322.4 407 74.7
Aa31LG11G2790 Aethionema arabicum HOM05D006667 ORTHO05D008387 8.8e-86 321.6 407 74.2
CARHR190200 Cardamine hirsuta HOM05D006667 ORTHO05D008387 2.6e-85 320.1 407 74.0
Thhalv10004329m.g Eutrema salsugineum HOM05D006667 ORTHO05D008387 2.8e-84 316.6 407 73.2
Sabra07G0063900 Salix brachista HOM05D006667 ORTHO05D008387 3.7e-84 316.2 466 58.8
Solyc04g008980.3 Solanum lycopersicum HOM05D006667 ORTHO05D008387 4.8e-84 315.8 404 74.5
Migut.L00803 Erythranthe guttata HOM05D006667 ORTHO05D008387 6.3e-84 315.5 405 73.1
Cpa.g.sc60.94 Carica papaya HOM05D006667 ORTHO05D008387 1.1e-83 314.7 407 71.3
Sc10g0006700 Simmondsia chinensis HOM05D006667 ORTHO05D008387 1.4e-83 314.3 398 75.6
Hund24389 Selenicereus undatus HOM05D006667 ORTHO05D008387 3.1e-83 313.2 408 71.6
DCAR_002607 Daucus carota HOM05D006667 ORTHO05D008387 4.1e-83 312.8 405 71.1
Sopen04g004160 Solanum pennellii HOM05D006667 ORTHO05D008387 5.3e-83 312.4 404 74.3
Aqoxy3G04313 Aquilegia oxysepala HOM05D006667 ORTHO05D008387 9.1e-83 311.6 398 69.1
Manes.04G162700 Manihot esculenta HOM05D006667 ORTHO05D008387 2.0e-82 310.5 407 73.7
Nitab4.5_0004979g0060 Nicotiana tabacum HOM05D006667 ORTHO05D008387 2.0e-82 310.5 407 72.5
CSS0023228 Camellia sinensis var. sinensis HOM05D006667 ORTHO05D008387 1.3e-81 307.8 407 71.0
Hma1.2p1_0044F.1_g026320 Hydrangea macrophylla HOM05D006667 ORTHO05D008387 2.9e-81 306.6 403 73.4
ClCG02G014160 Citrullus lanatus HOM05D006667 ORTHO05D008387 1.9e-80 303.9 405 71.4
Nitab4.5_0005997g0030 Nicotiana tabacum HOM05D006667 ORTHO05D008387 1.9e-80 303.9 407 72.7
Gohir.D12G135900 Gossypium hirsutum HOM05D006667 ORTHO05D008387 5.5e-80 302.4 412 70.9
CiPaw.05G172300 Carya illinoinensis HOM05D006667 ORTHO05D008387 7.2e-80 302.0 407 69.8
SalBow2G2931 Salvia bowleyana HOM05D006667 ORTHO05D008387 1.2e-79 301.2 401 73.1
BolC7t44948H Brassica oleracea HOM05D006667 ORTHO05D008387 1.6e-79 300.8 407 72.7
EL10Ac9g22983 Beta vulgaris HOM05D006667 ORTHO05D008387 3.6e-79 299.7 407 71.0
Gorai.008G147100 Gossypium raimondii HOM05D006667 ORTHO05D008387 3.6e-79 299.7 405 71.1
AT5G23340 Arabidopsis thaliana HOM05D006667 ORTHO05D008387 1.0e-78 298.1 407 72.0
A06p34280 Brassica napus HOM05D006667 ORTHO05D008387 1.0e-78 298.1 407 72.2
Sed0011343 Sechium edule HOM05D006667 ORTHO05D008387 1.8e-78 297.4 405 69.9
AUR62032948 Chenopodium quinoa HOM05D006667 ORTHO05D008387 3.0e-78 296.6 408 70.8
Sed0022119 Sechium edule HOM05D006667 ORTHO05D008387 3.0e-78 296.6 420 68.3
MBI06_g27487_MAGBIO Magnolia biondii HOM05D006667 ORTHO05D008387 5.2e-78 295.8 404 69.8
Carub.0006s2112 Capsella rubella HOM05D006667 ORTHO05D008387 4.4e-77 292.7 407 70.3
Cfa008778 Carpinus fangiana HOM05D006667 ORTHO05D008387 4.4e-77 292.7 414 67.1
Sp2g23820 Schrenkiella parvula HOM05D006667 ORTHO05D008387 1.3e-76 291.2 407 69.8
Thecc.02G154400 Theobroma cacao HOM05D006667 ORTHO05D008387 6.3e-76 288.9 411 69.6
CAN.G274.16 Capsicum annuum HOM05D006667 ORTHO05D008387 1.8e-75 287.3 418 69.1
unitig_749.g13342 Utricularia gibba HOM05D006667 ORTHO05D008387 5.4e-75 285.8 405 68.9
TWI74G1436 Tripterygium wilfordii HOM05D006667 ORTHO05D008387 2.7e-74 283.5 415 67.0
Atru.chr11.1242 Acer truncatum HOM05D006667 ORTHO05D008387 4.2e-72 276.2 392 70.4
Ciclev10033734m.g Citrus clementina HOM05D006667 ORTHO05D008387 4.2e-72 276.2 404 62.9
SGA_v2.0_scaffold80G25957 Striga asiatica HOM05D006667 ORTHO05D008387 9.5e-72 275.0 410 70.2
Hma1.2p1_0044F.1_g026310 Hydrangea macrophylla HOM05D006667 ORTHO05D008387 1.6e-71 274.2 433 54.5
BcaB07g29860 Brassica carinata HOM05D006667 ORTHO05D008387 1.0e-70 271.6 406 69.0
PGR142G2507 Punica granatum HOM05D006667 ORTHO05D008387 1.4e-70 271.2 401 68.3
Eucgr.G02589 Eucalyptus grandis HOM05D006667 ORTHO05D008387 4.0e-70 269.6 406 71.2
vmacro15997 Vaccinium macrocarpon HOM05D006667 ORTHO05D008387 7.5e-69 265.4 541 50.6
Ah.03g147880 Amaranthus hybridus HOM05D006667 ORTHO05D008387 1.8e-67 260.8 418 61.0
Zm00001eb185570 Zea mays HOM05D006667 ORTHO05D008387 9.2e-67 258.5 406 60.3
MSTRG.8092 Avicennia marina HOM05D006667 ORTHO05D008387 2.5e-64 250.4 404 65.3
COL.COLO4_33111 Corchorus olitorius HOM05D006667 ORTHO05D008387 1.4e-62 244.6 404 68.3
AUR62017733 Chenopodium quinoa HOM05D006667 ORTHO05D008387 1.5e-61 241.1 420 59.3
Phvul.007G014200 Phaseolus vulgaris HOM05D006667 ORTHO05D008387 1.3e-60 238.0 181 75.7
CDE04G2906 Ceratophyllum demersum HOM05D006667 ORTHO05D008387 1.9e-56 224.2 401 64.6
Ca_11262_v3 Cicer arietinum L. HOM05D006667 ORTHO05D008387 1.6e-55 221.1 181 69.1
Haze_11790 Corylus avellana HOM05D006667 ORTHO05D008387 8.9e-54 215.3 409 59.7
TWI53G1716 Tripterygium wilfordii HOM05D006667 ORTHO05D008387 9.8e-53 211.8 403 64.0
PSO017G3027 Papaver somniferum HOM05D006667 ORTHO05D008387 3.7e-52 209.9 402 62.9
ECA246G5028 Erigeron canadensis HOM05D002605 ORTHO05D002842 1.1e-51 208.4 399 63.9
Lsat_1_v5_gn_3_34481 Lactuca sativa HOM05D006667 ORTHO05D008387 5.4e-51 206.1 409 63.3
HanXRQChr17g0541041 Helianthus annuus HOM05D006667 ORTHO05D008387 2.1e-50 204.1 404 63.6
arahy.Tifrunner.gnm1.ann1.6XP1A8 Arachis hypogaea HOM05D006667 ORTHO05D008387 6.4e-44 182.6 108 81.5
arahy.Tifrunner.gnm1.ann1.RI7T4X Arachis hypogaea HOM05D006667 ORTHO05D008387 6.4e-44 182.6 108 81.5
Oeu027930.1 Olea europaea HOM05D006667 ORTHO05D008387 1.0e-41 175.3 407 59.5
HanXRQChr06g0171711 Helianthus annuus HOM05D006667 ORTHO05D008387 1.3e-41 174.9 413 58.4
Nn3g18579 Nelumbo nucifera HOM05D006667 ORTHO05D008387 7.3e-40 169.1 106 77.4
arahy.Tifrunner.gnm1.ann1.ALJ85P Arachis hypogaea HOM05D006667 ORTHO05D008387 8.1e-39 165.6 105 80.0
Gohir.A12G132300 Gossypium hirsutum HOM05D006667 ORTHO05D008387 8.1e-39 165.6 181 48.6
SEGI_01489 Sequoiadendron giganteum HOM05D006667 ORTHO05D008387 8.1e-39 165.6 394 58.4
Os02g0636400 Oryza sativa ssp. japonica HOM05D006667 ORTHO05D008387 2.0e-37 161.0 181 45.9
HPP92_025485 Vanilla planifolia HOM05D006667 ORTHO05D008387 5.8e-37 159.5 117 66.7
PSO170G5099 Papaver somniferum HOM05D006667 ORTHO05D008387 3.8e-36 156.8 113 65.5
arahy.Tifrunner.gnm1.ann1.L6WSTP Arachis hypogaea HOM05D006667 ORTHO05D008387 4.2e-35 153.3 104 76.0
Potri.007G075600 Populus trichocarpa HOM05D006667 ORTHO05D008387 2.1e-31 141.0 394 43.4
ATR0618G066 Amborella trichopoda HOM05D006667 ORTHO05D008387 2.8e-31 140.6 106 63.2
Dinv17648 Davidia involucrata HOM05D006667 ORTHO05D008387 5.8e-29 132.9 153 47.1
SMO116G0353 Selaginella moellendorffii HOM05D006667 ORTHO05D008387 1.3e-28 131.7 109 56.9
Medtr7g010500 Medicago truncatula HOM05D006667 ORTHO05D008387 3.2e-19 100.5 63 76.2
BcaC04g21805 Brassica carinata HOM05D006667 ORTHO05D008387 4.5e-13 80.1 82 47.6
C06p28130 Brassica napus HOM05D006667 ORTHO05D008387 2.5e-11 74.3 82 50.0
BolC6t37979H Brassica oleracea HOM05D006667 ORTHO05D008387 1.3e-09 68.6 82 46.3
Glyma.10G286666 Glycine max HOM05D006667 ORTHO05D008387 6.7e-09 66.2 44 70.5
ECA236G1847 Erigeron canadensis HOM05D005998 ORTHO05D007664 1.5e-08 65.1 130 33.8
Nitab4.5_0003794g0040 Nicotiana tabacum HOM05D002813 ORTHO05D003203 3.3e-08 63.9 136 31.6
C09p27300 Brassica napus HOM05D006667 ORTHO05D008387 7.4e-08 62.8 82 43.9
Eucgr.C02935 Eucalyptus grandis HOM05D002813 ORTHO05D003203 1.6e-07 61.6 136 32.4
BolC6t38487H Brassica oleracea HOM05D006667 ORTHO05D008387 2.1e-07 61.2 82 43.9
arahy.Tifrunner.gnm1.ann1.L75CTN Arachis hypogaea HOM05D002762 ORTHO05D004643 2.8e-07 60.8 128 33.6
MBI19_g11829_MAGBIO Magnolia biondii HOM05D003317 ORTHO05D003696 2.8e-07 60.8 186 25.3
MSTRG.3976 Avicennia marina HOM05D002762 ORTHO05D004643 3.7e-07 60.5 86 39.5
CAN.G400.3 Capsicum annuum HOM05D002813 ORTHO05D003203 3.7e-07 60.5 136 30.9
CDE05G1517 Ceratophyllum demersum HOM05D002762 ORTHO05D004643 3.7e-07 60.5 128 33.6
Manes.03G053200 Manihot esculenta HOM05D003317 ORTHO05D003696 3.7e-07 60.5 103 36.9
Sopen08g020490 Solanum pennellii HOM05D002813 ORTHO05D003203 4.8e-07 60.1 139 30.2
AagrBONN_evm.TU.Sc2ySwM_344.4786 Anthoceros agrestis HOM05D003317 ORTHO05D003696 6.2e-07 59.7 138 29.7
SalBow2G0360 Salvia bowleyana HOM05D002762 ORTHO05D004643 6.2e-07 59.7 86 39.5
SalBow2G3267 Salvia bowleyana HOM05D002762 ORTHO05D004643 6.2e-07 59.7 86 39.5
PGSC0003DMG400002228 Solanum tuberosum HOM05D002813 ORTHO05D003203 6.2e-07 59.7 136 30.1
arahy.Tifrunner.gnm1.ann1.EJ0XN1 Arachis hypogaea HOM05D002762 ORTHO05D004643 8.2e-07 59.3 128 32.8
Gohir.D05G048500 Gossypium hirsutum HOM05D002813 ORTHO05D003203 8.2e-07 59.3 138 30.4
Gorai.009G049800 Gossypium raimondii HOM05D002813 ORTHO05D003203 8.2e-07 59.3 138 30.4
Ciclev10004705m.g Citrus clementina HOM05D002762 ORTHO05D004643 1.1e-06 58.9 85 36.5
Gohir.A05G046700 Gossypium hirsutum HOM05D002813 ORTHO05D003203 1.1e-06 58.9 138 30.4
HanXRQChr03g0079911 Helianthus annuus HOM05D002762 ORTHO05D004643 1.1e-06 58.9 85 37.6
QL12p041348 Quercus lobata HOM05D002813 ORTHO05D003203 1.1e-06 58.9 138 31.2
Duzib168G2404 Durio zibethinus HOM05D002813 ORTHO05D003203 1.4e-06 58.5 138 28.3
FvH4_3g11250 Fragaria vesca HOM05D002813 ORTHO05D003203 1.4e-06 58.5 119 31.9
Nitab4.5_0002295g0030 Nicotiana tabacum HOM05D002762 ORTHO05D004643 1.4e-06 58.5 86 34.9
Potri.006G238300 Populus trichocarpa HOM05D002813 ORTHO05D003203 1.4e-06 58.5 138 30.4
Sed0023098 Sechium edule HOM05D003317 ORTHO05D003696 1.4e-06 58.5 136 28.7
VMungo1215G0792 Vigna mungo HOM05D002762 ORTHO05D004643 1.4e-06 58.5 87 36.8
Ah.08g209960 Amaranthus hybridus HOM05D002125 ORTHO05D002105 1.8e-06 58.2 137 29.2
BcaB01g06117 Brassica carinata HOM05D002125 ORTHO05D002105 1.8e-06 58.2 117 28.2
C03p00270 Brassica napus HOM05D002125 ORTHO05D002105 1.8e-06 58.2 117 28.2
BolC3t12601H Brassica oleracea HOM05D002125 ORTHO05D002105 1.8e-06 58.2 117 28.2
Migut.N00691 Erythranthe guttata HOM05D005998 ORTHO05D007664 1.8e-06 58.2 71 42.3
HanXRQChr08g0226481 Helianthus annuus HOM05D002762 ORTHO05D004643 1.8e-06 58.2 86 39.5
Nitab4.5_0002594g0070 Nicotiana tabacum HOM05D002762 ORTHO05D004643 1.8e-06 58.2 86 34.9
Phvul.003G097600 Phaseolus vulgaris HOM05D002762 ORTHO05D004643 1.8e-06 58.2 129 34.1
QL12p041358 Quercus lobata HOM05D002813 ORTHO05D003203 1.8e-06 58.2 138 29.0
TAR626G1934 Trochodendron aralioides HOM05D002813 ORTHO05D003203 1.8e-06 58.2 99 35.4
VMungo0647G0746 Vigna mungo HOM05D002125 ORTHO05D002105 1.8e-06 58.2 160 28.8
Dinv38356 Davidia involucrata HOM05D002762 ORTHO05D008831 2.4e-06 57.8 87 39.1
FAN19G2419 Fragaria x ananassa HOM05D003317 ORTHO05D003696 2.4e-06 57.8 103 35.9
GSVIVG01017859001 Vitis vinifera HOM05D002762 ORTHO05D004643 2.4e-06 57.8 86 37.2
Ca_00594_v3 Cicer arietinum L. HOM05D002762 ORTHO05D004643 3.1e-06 57.4 128 33.6
FAN28G0340 Fragaria x ananassa HOM05D003317 ORTHO05D003696 3.1e-06 57.4 103 35.9
Atru.chr4.2693 Acer truncatum HOM05D002762 ORTHO05D004643 4.0e-06 57.0 85 35.3
Eucgr.B01185 Eucalyptus grandis HOM05D002762 ORTHO05D004643 4.0e-06 57.0 85 36.5
FAN23G1713 Fragaria x ananassa HOM05D003317 ORTHO05D003696 4.0e-06 57.0 103 35.9
HanXRQChr11g0325871 Helianthus annuus HOM05D002762 ORTHO05D004643 4.0e-06 57.0 85 38.8
Lalb_Chr20g0118281 Lupinus albus HOM05D002762 ORTHO05D004643 4.0e-06 57.0 124 33.1
Actinidia23462 Actinidia chinensis HOM05D002762 ORTHO05D004643 5.3e-06 56.6 129 32.6
A03p00120 Brassica napus HOM05D002125 ORTHO05D002105 5.3e-06 56.6 117 28.2
BraA03t09402Z Brassica rapa HOM05D002125 ORTHO05D002105 5.3e-06 56.6 117 28.2
FvH4_1g08600 Fragaria vesca HOM05D003317 ORTHO05D003696 5.3e-06 56.6 103 35.9
Glyma.17G019800 Glycine max HOM05D002762 ORTHO05D004643 5.3e-06 56.6 129 34.1
Medtr4g125440 Medicago truncatula HOM05D003317 ORTHO05D003696 5.3e-06 56.6 87 39.1
FAN21G0510 Fragaria x ananassa HOM05D002813 ORTHO05D003203 6.9e-06 56.2 105 33.3
Nitab4.5_0028416g0010 Nicotiana tabacum HOM05D002813 ORTHO05D003203 6.9e-06 56.2 164 26.8
Actinidia40216 Actinidia chinensis HOM05D002762 ORTHO05D004643 9.0e-06 55.8 129 31.0
CSS0041788 Camellia sinensis var. sinensis HOM05D002762 ORTHO05D004643 9.0e-06 55.8 129 31.0
CSS0044156 Camellia sinensis var. sinensis HOM05D002762 ORTHO05D004643 9.0e-06 55.8 129 31.0
Nn4g26135 Nelumbo nucifera HOM05D002762 ORTHO05D004643 9.0e-06 55.8 129 32.6
Phvul.006G157700 Phaseolus vulgaris HOM05D002762 ORTHO05D004643 9.0e-06 55.8 128 32.0


User provided reference genes

Program Settings