Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G286000 Glycine max HOM05D004221 ORTHO05D004998 1.1e-75 286.6 151 100.0
Glyma.20G103300 Glycine max HOM05D004221 ORTHO05D004998 5.6e-67 257.7 155 89.0
Phvul.007G014900 Phaseolus vulgaris HOM05D004221 ORTHO05D004998 1.4e-62 243.0 150 86.0
VMungo0720G0328 Vigna mungo HOM05D004221 ORTHO05D004998 2.7e-61 238.8 150 84.0
Ca_11255_v3 Cicer arietinum L. HOM05D004221 ORTHO05D004998 3.0e-60 235.3 141 87.9
Lj5g0004809 Lotus japonicus HOM05D004221 ORTHO05D004998 6.7e-60 234.2 147 83.7
Lalb_Chr06g0163921 Lupinus albus HOM05D004221 ORTHO05D004998 6.2e-58 227.6 141 84.4
Medtr1g114500 Medicago truncatula HOM05D004221 ORTHO05D004998 6.2e-58 227.6 141 83.7
Psat6g233960 Pisum sativum HOM05D004221 ORTHO05D004998 8.1e-58 227.3 148 79.7
TPR.G4058 Trifolium pratense HOM05D004221 ORTHO05D004998 1.4e-57 226.5 141 83.7
arahy.Tifrunner.gnm1.ann1.8BKN44 Arachis hypogaea HOM05D004221 ORTHO05D004998 3.4e-56 221.9 140 82.9
arahy.Tifrunner.gnm1.ann1.G8X8S8 Arachis hypogaea HOM05D004221 ORTHO05D004998 3.4e-56 221.9 140 82.9
arahy.Tifrunner.gnm1.ann1.VLL77W Arachis hypogaea HOM05D004221 ORTHO05D004998 3.4e-56 221.9 140 82.9
PGR044G1895 Punica granatum HOM05D004221 ORTHO05D004998 3.4e-56 221.9 155 75.5
MD16G1003800 Malus domestica HOM05D004221 ORTHO05D004998 1.7e-55 219.5 140 78.6
COL.COLO4_33086 Corchorus olitorius HOM05D004221 ORTHO05D004998 2.2e-55 219.2 141 80.1
Lsat_1_v5_gn_4_64581 Lactuca sativa HOM05D004221 ORTHO05D004998 1.1e-54 216.9 141 78.0
ECA232G2799 Erigeron canadensis HOM05D004221 ORTHO05D004998 1.4e-54 216.5 141 77.3
CANSAT78G1084 Cannabis sativa HOM05D004221 ORTHO05D004998 1.9e-54 216.1 149 74.5
Prupe.1G348800 Prunus persica HOM05D004221 ORTHO05D004998 3.2e-54 215.3 141 77.3
MD13G1003600 Malus domestica HOM05D004221 ORTHO05D004998 4.2e-54 214.9 140 77.1
Nitab4.5_0013217g0020 Nicotiana tabacum HOM05D004221 ORTHO05D004998 5.5e-54 214.5 146 75.3
Eucgr.J00883 Eucalyptus grandis HOM05D004221 ORTHO05D004998 7.1e-54 214.2 150 76.7
Ciclev10032992m.g Citrus clementina HOM05D004221 ORTHO05D004998 1.2e-53 213.4 150 74.0
HanXRQChr04g0111871 Helianthus annuus HOM05D004221 ORTHO05D004998 1.2e-53 213.4 151 74.2
CiPaw.06G062100 Carya illinoinensis HOM05D004221 ORTHO05D004998 1.6e-53 213.0 139 78.4
Hund24383 Selenicereus undatus HOM05D004221 ORTHO05D004998 1.6e-53 213.0 141 78.0
Hma1.2p1_0513F.1_g169420 Hydrangea macrophylla HOM05D004221 ORTHO05D004998 2.1e-53 212.6 139 77.0
Thecc.02G156600 Theobroma cacao HOM05D004221 ORTHO05D004998 2.1e-53 212.6 156 71.8
THA.LOC104800677 Tarenaya hassleriana HOM05D004221 ORTHO05D004998 2.7e-53 212.2 146 74.7
EL10Ac9g22978 Beta vulgaris HOM05D004221 ORTHO05D004998 3.5e-53 211.8 141 78.0
Cfa008767 Carpinus fangiana HOM05D004221 ORTHO05D004998 4.6e-53 211.5 139 77.7
Actinidia04331 Actinidia chinensis HOM05D004221 ORTHO05D004998 7.9e-53 210.7 136 77.9
FAN12G1261 Fragaria x ananassa HOM05D004221 ORTHO05D004998 7.9e-53 210.7 140 75.7
Solyc01g008270.3 Solanum lycopersicum HOM05D004221 ORTHO05D004998 7.9e-53 210.7 141 75.9
Sopen01g003790 Solanum pennellii HOM05D004221 ORTHO05D004998 7.9e-53 210.7 141 75.9
CAN.G282.46 Capsicum annuum HOM05D004221 ORTHO05D004998 1.0e-52 210.3 136 77.9
Nn3g18605 Nelumbo nucifera HOM05D004221 ORTHO05D004998 1.0e-52 210.3 135 78.5
Gohir.A01G012400 Gossypium hirsutum HOM05D004221 ORTHO05D004998 2.3e-52 209.1 141 75.9
PGSC0003DMG400016397 Solanum tuberosum HOM05D004221 ORTHO05D004998 2.3e-52 209.1 136 77.2
Actinidia04067 Actinidia chinensis HOM05D004221 ORTHO05D004998 3.0e-52 208.8 136 77.2
FvH4_4g37090 Fragaria vesca HOM05D004221 ORTHO05D004998 3.0e-52 208.8 140 75.0
FAN07G0046 Fragaria x ananassa HOM05D004221 ORTHO05D004998 3.9e-52 208.4 140 75.0
Manes.11G108400 Manihot esculenta HOM05D004221 ORTHO05D004998 3.9e-52 208.4 136 77.9
RcHm_v2.0_Chr4g0446851 Rosa chinensis HOM05D004221 ORTHO05D004998 3.9e-52 208.4 136 77.2
Gorai.002G015400 Gossypium raimondii HOM05D004221 ORTHO05D004998 6.7e-52 207.6 141 75.9
Gohir.D01G013600 Gossypium hirsutum HOM05D004221 ORTHO05D004998 8.7e-52 207.2 141 75.2
GSVIVG01026144001 Vitis vinifera HOM05D004221 ORTHO05D004998 8.7e-52 207.2 138 76.8
FAN17G0592 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.1e-51 206.8 140 73.6
TWI74G0522 Tripterygium wilfordii HOM05D004221 ORTHO05D004998 1.5e-51 206.5 149 72.5
Sed0003164 Sechium edule HOM05D004221 ORTHO05D004998 1.9e-51 206.1 141 73.8
Potri.007G074042 Populus trichocarpa HOM05D004221 ORTHO05D004998 2.5e-51 205.7 141 72.3
Aa31LG11G2750 Aethionema arabicum HOM05D004221 ORTHO05D004998 3.3e-51 205.3 149 69.8
Carub.0006s2106 Capsella rubella HOM05D004221 ORTHO05D004998 3.3e-51 205.3 147 70.1
FAN10G4155 Fragaria x ananassa HOM05D004221 ORTHO05D004998 3.3e-51 205.3 140 72.1
TWI77G0364 Tripterygium wilfordii HOM05D004221 ORTHO05D004998 3.3e-51 205.3 149 71.8
ATR0618G284 Amborella trichopoda HOM05D004221 ORTHO05D004998 4.3e-51 204.9 141 76.6
AT5G23290 Arabidopsis thaliana HOM05D004221 ORTHO05D004998 4.3e-51 204.9 147 70.1
Migut.E00685 Erythranthe guttata HOM05D004221 ORTHO05D004998 5.6e-51 204.5 136 74.3
FAN03G0273 Fragaria x ananassa HOM05D004221 ORTHO05D004998 5.6e-51 204.5 140 72.1
FAN23G3078 Fragaria x ananassa HOM05D004221 ORTHO05D004998 5.6e-51 204.5 140 72.1
Potri.005G090100 Populus trichocarpa HOM05D004221 ORTHO05D004998 5.6e-51 204.5 141 73.0
TAR629G3528 Trochodendron aralioides HOM05D004221 ORTHO05D004998 5.6e-51 204.5 141 73.8
HPP92_005060 Vanilla planifolia HOM05D004221 ORTHO05D004998 5.6e-51 204.5 141 73.0
MSTRG.13679 Avicennia marina HOM05D004221 ORTHO05D004998 7.4e-51 204.1 143 72.7
CARHR190250 Cardamine hirsuta HOM05D004221 ORTHO05D004998 9.6e-51 203.8 147 69.4
TAR629G0713 Trochodendron aralioides HOM05D004221 ORTHO05D004998 9.6e-51 203.8 141 73.0
THA.LOC104818379 Tarenaya hassleriana HOM05D004221 ORTHO05D004998 1.3e-50 203.4 138 73.9
AL6G34550 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 1.6e-50 203.0 147 69.4
Duzib132G0545 Durio zibethinus HOM05D004221 ORTHO05D004998 2.1e-50 202.6 141 71.6
Duzib132G0858 Durio zibethinus HOM05D004221 ORTHO05D004998 2.1e-50 202.6 141 71.6
FAN15G1018 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.1e-50 202.6 140 72.1
AUR62032953 Chenopodium quinoa HOM05D004221 ORTHO05D004998 2.8e-50 202.2 141 73.0
CsaV3_5G020730 Cucumis sativus L. HOM05D004221 ORTHO05D004998 3.7e-50 201.8 141 72.3
C09p07830 Brassica napus HOM05D004221 ORTHO05D004998 8.1e-50 200.7 150 66.7
BolC9t53699H Brassica oleracea HOM05D004221 ORTHO05D004998 8.1e-50 200.7 150 66.7
Aqoxy3G04291 Aquilegia oxysepala HOM05D004221 ORTHO05D004998 1.1e-49 200.3 141 71.6
BcaC04g23487 Brassica carinata HOM05D004221 ORTHO05D004998 1.4e-49 199.9 150 66.7
Sc26g0002050 Simmondsia chinensis HOM05D004221 ORTHO05D004998 1.8e-49 199.5 141 72.3
Os10g0488100 Oryza sativa ssp. japonica HOM05D004221 ORTHO05D004998 2.4e-49 199.1 139 72.7
A09p07020 Brassica napus HOM05D004221 ORTHO05D004998 5.3e-49 198.0 150 66.7
BraA09t36350Z Brassica rapa HOM05D004221 ORTHO05D004998 5.3e-49 198.0 150 66.7
Thhalv10005074m.g Eutrema salsugineum HOM05D004221 ORTHO05D004998 5.3e-49 198.0 146 67.8
PSO017G5121 Papaver somniferum HOM05D004221 ORTHO05D004998 5.3e-49 198.0 135 74.1
C07p44270 Brassica napus HOM05D004221 ORTHO05D004998 6.9e-49 197.6 150 67.3
A06p34250 Brassica napus HOM05D004221 ORTHO05D004998 9.0e-49 197.2 150 66.7
BraA06t26357Z Brassica rapa HOM05D004221 ORTHO05D004998 9.0e-49 197.2 150 66.7
PSO170G6579 Papaver somniferum HOM05D004221 ORTHO05D004998 9.0e-49 197.2 135 74.1
Sp2g23860 Schrenkiella parvula HOM05D004221 ORTHO05D004998 1.2e-48 196.8 140 70.0
Zm00001eb045320 Zea mays HOM05D004221 ORTHO05D004998 1.2e-48 196.8 135 73.3
Haze_11779 Corylus avellana HOM05D004221 ORTHO05D004998 1.5e-48 196.4 171 63.7
unitig_699.g19553 Utricularia gibba HOM05D004221 ORTHO05D004998 2.0e-48 196.1 146 68.5
BolC7t44950H Brassica oleracea HOM05D004221 ORTHO05D004998 2.6e-48 195.7 150 66.0
CDE02G2963 Ceratophyllum demersum HOM05D004221 ORTHO05D004998 3.4e-48 195.3 141 70.2
AUR62017728 Chenopodium quinoa HOM05D004221 ORTHO05D004998 3.4e-48 195.3 141 73.0
MBI06_g27498_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 3.4e-48 195.3 139 73.4
BcaB04g19880 Brassica carinata HOM05D004221 ORTHO05D004998 6.5e-47 191.0 161 62.1
ClCG01G008100 Citrullus lanatus HOM05D004221 ORTHO05D004998 4.2e-46 188.3 180 58.9
FAN03G3278 Fragaria x ananassa HOM05D004221 ORTHO05D004998 7.1e-46 187.6 140 67.9
FAN10G1077 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.2e-45 186.8 140 67.1
FAN17G2528 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.8e-44 183.0 140 66.4
Nitab4.5_0000069g0160 Nicotiana tabacum HOM05D004221 ORTHO05D004998 1.8e-44 183.0 125 74.4
SGA_v2.0_scaffold256G45657 Striga asiatica HOM05D004221 ORTHO05D004998 3.0e-44 182.2 180 56.1
Sabra07G0062100 Salix brachista HOM05D004221 ORTHO05D004998 6.7e-44 181.0 190 53.7
DCAR_023468 Daucus carota HOM05D004221 ORTHO05D004998 1.1e-43 180.3 120 76.7
CDE04G0710 Ceratophyllum demersum HOM05D004221 ORTHO05D004998 1.5e-43 179.9 151 63.6
RcHm_v2.0_Chr2g0169341 Rosa chinensis HOM05D004221 ORTHO05D004998 1.5e-43 179.9 114 79.8
RcHm_v2.0_Chr6g0253901 Rosa chinensis HOM05D004221 ORTHO05D004998 1.5e-43 179.9 114 79.8
Duzib052G1226 Durio zibethinus HOM05D004221 ORTHO05D004998 1.9e-43 179.5 139 66.2
RcHm_v2.0_Chr4g0389221 Rosa chinensis HOM05D004221 ORTHO05D004998 3.3e-43 178.7 114 79.8
Atru.chr11.1114 Acer truncatum HOM05D004221 ORTHO05D004998 4.3e-43 178.3 114 77.2
Cc00_g07040 Coffea canephora HOM05D004221 ORTHO05D004998 5.7e-43 177.9 121 75.2
RcHm_v2.0_Chr1g0343381 Rosa chinensis HOM05D004221 ORTHO05D004998 5.7e-43 177.9 114 78.9
Lj3A847T45 Lonicera japonica HOM05D004221 ORTHO05D004998 7.4e-43 177.6 114 77.2
CSS0001435 Camellia sinensis var. sinensis HOM05D004221 ORTHO05D004998 2.1e-42 176.0 114 76.3
Dinv17642 Davidia involucrata HOM05D004221 ORTHO05D004998 2.1e-42 176.0 117 75.2
Peaxi162Scf00021g02223 Petunia axillaris HOM05D004221 ORTHO05D004998 2.1e-42 176.0 147 66.0
TAR371G0536 Trochodendron aralioides HOM05D004221 ORTHO05D004998 2.1e-42 176.0 134 68.7
vmacro15987 Vaccinium macrocarpon HOM05D004221 ORTHO05D004998 2.1e-42 176.0 205 50.7
RcHm_v2.0_Chr5g0039981 Rosa chinensis HOM05D004221 ORTHO05D004998 3.7e-42 175.3 114 78.1
Cpa.g.sc60.76 Carica papaya HOM05D004221 ORTHO05D004998 4.8e-42 174.9 131 67.9
RcHm_v2.0_Chr4g0391701 Rosa chinensis HOM05D004221 ORTHO05D004998 4.8e-42 174.9 114 78.1
Rhsim09G0069500 Rhododendron simsii HOM05D004221 ORTHO05D004998 6.3e-42 174.5 210 49.5
RcHm_v2.0_Chr4g0391031 Rosa chinensis HOM05D004221 ORTHO05D004998 6.3e-42 174.5 114 77.2
RcHm_v2.0_Chr5g0070771 Rosa chinensis HOM05D004221 ORTHO05D004998 8.2e-42 174.1 114 77.2
FAN07G1220 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.2e-40 170.2 113 75.2
SEGI_18337 Sequoiadendron giganteum HOM05D004221 ORTHO05D004998 2.0e-40 169.5 141 59.6
Duzib132G0203 Durio zibethinus HOM05D004221 ORTHO05D004998 3.4e-40 168.7 114 71.9
Mapoly0041s0007 Marchantia polymorpha HOM05D004221 ORTHO05D004998 7.6e-40 167.5 147 56.5
Pp3c1_32320 Physcomitrium patens HOM05D004221 ORTHO05D004998 6.5e-39 164.5 148 56.8
SMO114G0084 Selaginella moellendorffii HOM05D004221 ORTHO05D004998 1.9e-38 162.9 141 55.3
SalBow2G0865 Salvia bowleyana HOM05D004221 ORTHO05D004998 4.2e-38 161.8 114 71.1
AagrBONN_evm.TU.Sc2ySwM_117.4013 Anthoceros agrestis HOM05D004221 ORTHO05D004998 1.2e-37 160.2 140 56.4
Sabra05G0074200 Salix brachista HOM05D004221 ORTHO05D004998 1.6e-37 159.8 227 44.9
AL2G24680 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 6.1e-37 157.9 116 67.2
AL8G16830 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 6.1e-37 157.9 116 67.2
SGA_v2.0_scaffold358G49836 Striga asiatica HOM05D004221 ORTHO05D004998 5.3e-33 144.8 150 54.0
Ah.01g012690 Amaranthus hybridus HOM05D004221 ORTHO05D004998 4.6e-29 131.7 87 75.9
Oeu013195.1 Olea europaea HOM05D004221 ORTHO05D004998 8.8e-28 127.5 87 73.6
AUR62032946 Chenopodium quinoa HOM05D004221 ORTHO05D004998 4.4e-27 125.2 87 71.3
SHI21211 Sapria himalayana HOM05D004221 ORTHO05D004998 4.1e-25 118.6 200 38.5
Oeu041209.1 Olea europaea HOM05D004221 ORTHO05D004998 5.3e-25 118.2 94 70.2
SEGI_37490 Sequoiadendron giganteum HOM05D004221 ORTHO05D004998 1.2e-24 117.1 81 64.2
CBR_g19844 Chara braunii HOM05D002142 ORTHO05D001189 1.3e-23 113.6 133 42.1
Lj9A327T34 Lonicera japonica HOM05D004221 ORTHO05D004998 1.3e-23 113.6 136 50.0
MCO07G569 Micromonas commoda HOM05D004221 ORTHO05D004998 3.2e-22 109.0 137 38.7
RcHm_v2.0_Chr5g0067401 Rosa chinensis HOM05D004221 ORTHO05D004998 7.2e-22 107.8 70 80.0
RcHm_v2.0_Chr6g0266371 Rosa chinensis HOM05D004221 ORTHO05D004998 7.2e-22 107.8 70 80.0
RcHm_v2.0_Chr3g0478071 Rosa chinensis HOM05D004221 ORTHO05D004998 4.7e-21 105.1 70 77.1
MELO3C000273.2 Cucumis melo HOM05D004221 ORTHO05D004998 2.3e-20 102.8 70 72.9
A02p41030 Brassica napus HOM05D004221 ORTHO05D004998 8.8e-20 100.9 77 59.7
RcHm_v2.0_Chr6g0274601 Rosa chinensis HOM05D004221 ORTHO05D004998 2.2e-18 96.3 64 78.1
MELO3C033736.2 Cucumis melo HOM05D004221 ORTHO05D004998 2.4e-17 92.8 64 73.4
Gorai.002G209700 Gossypium raimondii HOM05D004221 ORTHO05D004998 2.2e-15 86.3 57 68.4
Gohir.D01G168833 Gossypium hirsutum HOM05D004221 ORTHO05D004998 2.9e-15 85.9 57 68.4
PRCOL_00006790 Prasinoderma coloniale HOM05D004221 ORTHO05D004998 8.5e-15 84.3 134 33.6
MBI19_g48155_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 1.6e-13 80.1 60 70.0
Cre12.g523150 Chlamydomonas reinhardtii HOM05D004221 ORTHO05D004998 8.0e-13 77.8 133 30.8
Gohir.A01G178033 Gossypium hirsutum HOM05D004221 ORTHO05D004998 8.0e-13 77.8 56 64.3
MBI19_g31737_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 1.0e-12 77.4 60 68.3
Oeu013194.1 Olea europaea HOM05D004221 ORTHO05D004998 1.0e-12 77.4 47 76.6
Sed0018067 Sechium edule HOM05D004221 ORTHO05D004998 1.2e-11 73.9 53 69.8
AL1G29290 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 1.1e-09 67.4 55 63.6
AL8G24780 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 1.1e-09 67.4 55 63.6
SalBow3G1738 Salvia bowleyana HOM05D004221 ORTHO05D004998 1.7e-07 60.1 50 56.0
SalBow6G4331 Salvia bowleyana HOM05D004221 ORTHO05D004998 1.9e-06 56.6 41 68.3


User provided reference genes

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