Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G280500 Glycine max HOM05D006757 ORTHO05D004651 0.0e+00 1364.4 775 100.0
VMungo0720G1053 Vigna mungo HOM05D006757 ORTHO05D004651 0.0e+00 1106.3 780 85.4
Phvul.007G020500 Phaseolus vulgaris HOM05D006757 ORTHO05D004651 0.0e+00 1099.3 778 85.6
Ca_11197_v3 Cicer arietinum L. HOM05D006757 ORTHO05D004651 1.3e-273 946.4 761 77.4
Lj5g0011768 Lotus japonicus HOM05D006757 ORTHO05D004651 9.7e-272 940.3 782 76.1
Lalb_Chr21g0306871 Lupinus albus HOM05D006757 ORTHO05D004651 4.3e-264 914.8 777 73.4
arahy.Tifrunner.gnm1.ann1.18R96V Arachis hypogaea HOM05D006757 ORTHO05D004651 5.0e-260 901.4 777 72.2
arahy.Tifrunner.gnm1.ann1.CLVE3A Arachis hypogaea HOM05D006757 ORTHO05D004651 8.5e-260 900.6 777 72.3
Psat6g231440 Pisum sativum HOM05D006757 ORTHO05D004651 2.9e-252 875.5 779 72.3
TPR.G2437 Trifolium pratense HOM05D006757 ORTHO05D004651 1.9e-251 872.8 668 71.3
Medtr1g112280 Medicago truncatula HOM05D006757 ORTHO05D004651 4.1e-246 855.1 781 71.3
Prupe.1G340900 Prunus persica HOM05D006757 ORTHO05D004651 1.9e-166 590.5 788 54.8
Duzib248G0842 Durio zibethinus HOM05D006757 ORTHO05D004651 5.5e-166 589.0 791 54.6
CiPaw.05G164400 Carya illinoinensis HOM05D006757 ORTHO05D004651 8.7e-164 581.6 743 56.7
Gohir.A01G144000 Gossypium hirsutum HOM05D006757 ORTHO05D004651 1.3e-162 577.8 780 53.8
Thecc.02G299300 Theobroma cacao HOM05D006757 ORTHO05D004651 1.1e-161 574.7 784 53.8
Gorai.002G169200 Gossypium raimondii HOM05D006757 ORTHO05D004651 4.9e-159 565.8 746 54.8
Gohir.D01G136700 Gossypium hirsutum HOM05D006757 ORTHO05D004651 6.5e-159 565.5 746 54.8
MD16G1009700 Malus domestica HOM05D006757 ORTHO05D004651 1.0e-156 558.1 785 52.6
QL03p041041 Quercus lobata HOM05D006757 ORTHO05D004651 1.0e-156 558.1 889 48.9
TWI53G1444 Tripterygium wilfordii HOM05D006757 ORTHO05D004651 3.0e-156 556.6 786 53.2
FAN17G2536 Fragaria x ananassa HOM05D006757 ORTHO05D004651 1.8e-153 547.4 787 53.4
RcHm_v2.0_Chr4g0445651 Rosa chinensis HOM05D006757 ORTHO05D004651 9.0e-153 545.0 790 53.3
COL.COLO4_27539 Corchorus olitorius HOM05D006757 ORTHO05D004651 1.1e-150 538.1 727 55.4
CSS0018736 Camellia sinensis var. sinensis HOM05D006757 ORTHO05D004651 2.1e-149 533.9 795 52.8
TAR622G0072 Trochodendron aralioides HOM05D006757 ORTHO05D004651 2.3e-148 530.4 809 51.1
Dinv02708 Davidia involucrata HOM05D006757 ORTHO05D004651 8.8e-148 528.5 790 52.7
GSVIVG01010290001 Vitis vinifera HOM05D006757 ORTHO05D004651 2.5e-147 526.9 680 57.8
FAN12G3615 Fragaria x ananassa HOM05D006757 ORTHO05D004651 5.7e-147 525.8 785 51.6
Nn4g24781 Nelumbo nucifera HOM05D006757 ORTHO05D004651 5.3e-145 519.2 706 52.5
CsaV3_5G017370 Cucumis sativus L. HOM05D006757 ORTHO05D004651 2.2e-143 513.8 712 53.7
MELO3C005216.2 Cucumis melo HOM05D006757 ORTHO05D004651 4.7e-141 506.1 709 53.5
Sabra10G0071900 Salix brachista HOM05D006757 ORTHO05D004651 2.3e-140 503.8 700 44.7
Actinidia12418 Actinidia chinensis HOM05D006757 ORTHO05D004651 1.1e-139 501.5 773 50.8
FAN22G1875 Fragaria x ananassa HOM05D006757 ORTHO05D004651 5.7e-139 499.2 838 49.4
ClCG01G006950 Citrullus lanatus HOM05D006757 ORTHO05D004651 9.7e-139 498.4 722 52.9
CANSAT78G0289 Cannabis sativa HOM05D006757 ORTHO05D004651 1.7e-138 497.7 600 48.8
FAN07G0462 Fragaria x ananassa HOM05D006757 ORTHO05D004651 3.8e-135 486.5 782 48.6
Lj6C727G2 Lonicera japonica HOM05D006757 ORTHO05D004651 2.1e-133 480.7 785 47.6
PGR142G0977 Punica granatum HOM05D006757 ORTHO05D004651 3.0e-132 476.9 716 50.4
Aqoxy3G04184 Aquilegia oxysepala HOM05D006757 ORTHO05D004651 3.1e-129 466.8 642 44.1
FvH4_4g36030 Fragaria vesca HOM05D006757 ORTHO05D004651 3.8e-127 459.9 632 55.5
EL10Ac6g15397 Beta vulgaris HOM05D006757 ORTHO05D004651 1.6e-125 454.5 784 45.8
Solyc01g007880.4 Solanum lycopersicum HOM05D006757 ORTHO05D004651 2.7e-125 453.8 799 46.8
Rhsim09G0078600 Rhododendron simsii HOM05D006757 ORTHO05D004651 4.4e-123 446.4 884 45.4
Eucgr.G02041 Eucalyptus grandis HOM05D006757 ORTHO05D004651 1.3e-122 444.9 656 51.8
Sopen01g003410 Solanum pennellii HOM05D006757 ORTHO05D004651 1.7e-122 444.5 717 49.1
Ciclev10006553m.g Citrus clementina HOM05D006757 ORTHO05D004651 6.3e-122 442.6 633 53.7
PSO063G3495 Papaver somniferum HOM05D006757 ORTHO05D004651 5.9e-120 436.0 609 43.7
Manes.17G092000 Manihot esculenta HOM05D006757 ORTHO05D004651 1.2e-117 428.3 654 52.1
AUR62017786 Chenopodium quinoa HOM05D006757 ORTHO05D004651 5.2e-116 422.9 746 46.6
ATR0807G004 Amborella trichopoda HOM05D006757 ORTHO05D004651 7.0e-113 412.5 679 39.6
Lsat_1_v5_gn_8_33901 Lactuca sativa HOM05D006757 ORTHO05D004651 5.9e-112 409.5 782 46.0
Carub.0002s2179 Capsella rubella HOM05D006757 ORTHO05D004651 6.6e-111 406.0 781 43.9
MSTRG.2098 Avicennia marina HOM05D006757 ORTHO05D004651 1.5e-110 404.8 703 46.2
AL2G34890 Arabidopsis lyrata HOM05D006757 ORTHO05D004651 5.5e-110 402.9 700 46.3
AT1G75010 Arabidopsis thaliana HOM05D006757 ORTHO05D004651 5.5e-110 402.9 787 44.3
Sp5g30140 Schrenkiella parvula HOM05D006757 ORTHO05D004651 1.2e-109 401.7 790 43.5
ECA233G5323 Erigeron canadensis HOM05D006757 ORTHO05D004651 2.3e-108 397.5 735 46.9
SGA_v2.0_scaffold470G52072 Striga asiatica HOM05D006757 ORTHO05D004651 4.0e-108 396.7 776 45.1
Migut.E00572 Erythranthe guttata HOM05D006757 ORTHO05D004651 6.8e-108 396.0 731 46.4
Thhalv10018185m.g Eutrema salsugineum HOM05D006757 ORTHO05D004651 2.6e-107 394.0 718 47.6
BcaC08g46956 Brassica carinata HOM05D006757 ORTHO05D004651 1.8e-105 387.9 714 45.4
AUR62003477 Chenopodium quinoa HOM05D006757 ORTHO05D004651 4.1e-105 386.7 653 49.2
vmacro10765 Vaccinium macrocarpon HOM05D006757 ORTHO05D004651 7.0e-105 386.0 694 49.1
HanXRQChr12g0365871 Helianthus annuus HOM05D006757 ORTHO05D004651 9.2e-105 385.6 733 46.4
DCAR_030323 Daucus carota HOM05D006757 ORTHO05D004651 2.7e-104 384.0 533 43.7
Nitab4.5_0004543g0020 Nicotiana tabacum HOM05D006757 ORTHO05D004651 2.3e-103 380.9 685 47.3
A07p40640 Brassica napus HOM05D006757 ORTHO05D004651 1.5e-102 378.3 742 44.3
Aa31LG4G5230 Aethionema arabicum HOM05D006757 ORTHO05D004651 1.6e-101 374.8 797 42.4
BraA07t31608Z Brassica rapa HOM05D006757 ORTHO05D004651 1.6e-101 374.8 744 44.1
BcaC08g46933 Brassica carinata HOM05D006757 ORTHO05D004651 1.0e-100 372.1 722 45.0
Cc11_g03340 Coffea canephora HOM05D006757 ORTHO05D004651 1.8e-100 371.3 676 46.9
Atru.chr11.1028 Acer truncatum HOM05D006757 ORTHO05D004651 4.0e-100 370.2 475 45.9
BolC6t39938H Brassica oleracea HOM05D006757 ORTHO05D004651 2.0e-99 367.9 723 45.0
Sed0027541 Sechium edule HOM05D006757 ORTHO05D004651 7.0e-97 359.4 577 52.0
C06p49010 Brassica napus HOM05D006757 ORTHO05D004651 2.7e-96 357.5 754 43.9
THA.LOC104809054 Tarenaya hassleriana HOM05D006757 ORTHO05D004651 1.7e-95 354.8 705 45.7
Potri.010G099300 Populus trichocarpa HOM05D006757 ORTHO05D004651 6.2e-93 346.3 548 52.6
CARHR068320 Cardamine hirsuta HOM05D006757 ORTHO05D004651 1.4e-89 335.1 627 46.9
Cpa.g.sc2.85 Carica papaya HOM05D006757 ORTHO05D004651 1.7e-87 328.2 477 44.2
SalBow2G2705 Salvia bowleyana HOM05D006757 ORTHO05D004651 6.4e-82 309.7 576 47.4
Os09g0555600 Oryza sativa ssp. japonica HOM05D006757 ORTHO05D004651 1.0e-79 302.4 635 34.8
HPP92_025367 Vanilla planifolia HOM05D006757 ORTHO05D004651 3.1e-76 290.8 690 41.2
Sc17g0005480 Simmondsia chinensis HOM05D006757 ORTHO05D004651 2.6e-75 287.7 594 45.1
Peaxi162Scf00097g00232 Petunia axillaris HOM05D006757 ORTHO05D004651 3.4e-75 287.3 644 43.2
CAN.G282.84 Capsicum annuum HOM05D006757 ORTHO05D004651 6.0e-72 276.6 546 47.4
unitig_699.g19471 Utricularia gibba HOM05D006757 ORTHO05D004651 2.9e-66 257.7 719 37.6
Haze_10724 Corylus avellana HOM05D006757 ORTHO05D004651 3.0e-63 247.7 436 53.2
BcaNung05827 Brassica carinata HOM05D006757 ORTHO05D004651 5.8e-59 233.4 736 30.3
Nitab4.5_0000944g0040 Nicotiana tabacum HOM05D006757 ORTHO05D004651 3.5e-56 224.2 236 48.7
Hma1.2p1_0933F.1_g238410 Hydrangea macrophylla HOM05D006757 ORTHO05D004651 1.9e-54 218.4 454 49.8
Hma1.2p1_0933F.1_g238400 Hydrangea macrophylla HOM05D006757 ORTHO05D004651 1.4e-49 202.2 343 39.4
BolC2t09256H Brassica oleracea HOM05D006757 ORTHO05D004651 5.5e-49 200.3 515 31.3
Oeu001141.1 Olea europaea HOM05D006757 ORTHO05D004651 1.9e-46 191.8 272 44.9
BcaC03g15537 Brassica carinata HOM05D006757 ORTHO05D004651 3.7e-45 187.6 470 31.1
Hund12802 Selenicereus undatus HOM05D006757 ORTHO05D004651 1.7e-42 178.7 407 48.4
CSS0036943 Camellia sinensis var. sinensis HOM05D006757 ORTHO05D004651 3.9e-39 167.5 175 53.7
Mapoly0058s0047 Marchantia polymorpha HOM05D006757 ORTHO05D004651 2.2e-37 161.8 643 28.1
Glyma.20G109150 Glycine max HOM05D006757 ORTHO05D004651 6.7e-31 140.2 81 91.4
SEGI_38740 Sequoiadendron giganteum HOM05D006757 ORTHO05D004651 1.4e-28 132.5 262 36.6
SalBow2G2121 Salvia bowleyana HOM05D006757 ORTHO05D004651 5.0e-26 124.0 168 44.0
COL.COLO4_13886 Corchorus olitorius HOM05D003428 ORTHO05D004131 6.7e-23 113.6 309 33.7
Zm00001eb320640 Zea mays HOM05D006757 ORTHO05D004651 2.8e-21 108.2 255 34.1
CSS0016054 Camellia sinensis var. sinensis HOM05D006757 ORTHO05D004651 8.2e-21 106.7 208 41.8
CDE04G1248 Ceratophyllum demersum HOM05D006757 ORTHO05D004651 2.4e-20 105.1 77 68.8
Actinidia37474 Actinidia chinensis HOM05D006757 ORTHO05D004651 6.5e-18 97.1 146 45.2
CDE04G0645 Ceratophyllum demersum HOM05D006757 ORTHO05D004651 9.4e-17 93.2 304 27.6
Peaxi162Scf00097g02317 Petunia axillaris HOM05D006757 ORTHO05D004651 4.0e-15 87.8 77 55.8
CSS0046499 Camellia sinensis var. sinensis HOM05D006757 ORTHO05D004651 5.7e-14 84.0 47 80.9
Ciclev10006110m.g Citrus clementina HOM05D006757 ORTHO05D004651 1.7e-13 82.4 146 34.9
Haze_10728 Corylus avellana HOM05D063416 ORTHO05D034208 2.7e-11 75.1 110 46.4
Cc11_g03350 Coffea canephora HOM05D006757 ORTHO05D004651 2.2e-10 72.0 47 68.1
vmacro10766 Vaccinium macrocarpon HOM05D006757 ORTHO05D004651 2.1e-08 65.5 171 29.2
Actinidia37475 Actinidia chinensis HOM05D006757 ORTHO05D004651 4.4e-06 57.8 30 83.3


User provided reference genes

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