Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G279000 Glycine max HOM05D007039 ORTHO05D008886 5.7e-121 437.6 216 100.0
Glyma.20G110700 Glycine max HOM05D007039 ORTHO05D008886 1.3e-104 383.3 239 83.3
Phvul.007G022300 Phaseolus vulgaris HOM05D007039 ORTHO05D008886 2.3e-98 362.5 239 77.8
VMungo0720G0617 Vigna mungo HOM05D007039 ORTHO05D008886 3.0e-98 362.1 239 78.2
Ca_25665_v3 Cicer arietinum L. HOM05D007039 ORTHO05D008886 3.6e-91 338.6 239 73.6
arahy.Tifrunner.gnm1.ann1.2NV5LW Arachis hypogaea HOM05D007039 ORTHO05D008886 2.2e-88 329.3 238 69.7
arahy.Tifrunner.gnm1.ann1.XC1RGZ Arachis hypogaea HOM05D007039 ORTHO05D008886 4.8e-88 328.2 238 69.7
Lj5g0024269 Lotus japonicus HOM05D007039 ORTHO05D008886 4.8e-88 328.2 234 71.8
Psat6g231000 Pisum sativum HOM05D007039 ORTHO05D008886 6.3e-88 327.8 237 70.9
Medtr1g112080 Medicago truncatula HOM05D007039 ORTHO05D008886 8.3e-88 327.4 237 70.5
TPR.G2471 Trifolium pratense HOM05D007039 ORTHO05D008886 1.6e-86 323.2 237 70.5
Lalb_Chr06g0166411 Lupinus albus HOM05D007039 ORTHO05D008886 5.9e-86 321.2 238 69.7
Cc02_g09650 Coffea canephora HOM05D007039 ORTHO05D008886 1.0e-77 293.9 237 65.0
Lj2A32T31 Lonicera japonica HOM05D007039 ORTHO05D008886 1.7e-77 293.1 237 64.1
Oeu025598.1 Olea europaea HOM05D007039 ORTHO05D008886 1.7e-77 293.1 237 63.7
TWI63G1767 Tripterygium wilfordii HOM05D007039 ORTHO05D008886 6.6e-77 291.2 237 63.3
Rhsim09G0142000 Rhododendron simsii HOM05D007039 ORTHO05D008886 3.3e-76 288.9 237 63.7
Eucgr.J00258 Eucalyptus grandis HOM05D007039 ORTHO05D008886 7.3e-76 287.7 237 61.6
CiPaw.14G032800 Carya illinoinensis HOM05D007039 ORTHO05D008886 9.5e-76 287.3 237 62.4
Atru.chr12.1023 Acer truncatum HOM05D007039 ORTHO05D008886 2.8e-75 285.8 238 62.2
RcHm_v2.0_Chr1g0331721 Rosa chinensis HOM05D007039 ORTHO05D008886 2.8e-75 285.8 236 61.9
CAN.G186.55 Capsicum annuum HOM05D007039 ORTHO05D008886 3.6e-75 285.4 237 61.2
Solyc04g009700.3 Solanum lycopersicum HOM05D007039 ORTHO05D008886 6.1e-75 284.6 237 60.3
Ciclev10016452m.g Citrus clementina HOM05D007039 ORTHO05D008886 8.0e-75 284.3 238 61.8
PGSC0003DMG400016998 Solanum tuberosum HOM05D007039 ORTHO05D008886 1.0e-74 283.9 237 60.3
Prupe.2G067300 Prunus persica HOM05D007039 ORTHO05D008886 1.4e-74 283.5 237 62.0
Sopen04g004820 Solanum pennellii HOM05D007039 ORTHO05D008886 1.8e-74 283.1 237 60.3
HanXRQChr08g0217501 Helianthus annuus HOM05D007039 ORTHO05D008886 2.3e-74 282.7 236 61.9
CANSAT56G1368 Cannabis sativa HOM05D007039 ORTHO05D008886 5.2e-74 281.6 239 61.9
Oeu036842.1 Olea europaea HOM05D007039 ORTHO05D008886 8.9e-74 280.8 238 61.3
MD02G1261300 Malus domestica HOM05D007039 ORTHO05D008886 1.5e-73 280.0 237 60.8
SalBow6G1307 Salvia bowleyana HOM05D007039 ORTHO05D008886 2.6e-73 279.3 238 60.5
TAR623G0720 Trochodendron aralioides HOM05D007039 ORTHO05D008886 3.4e-73 278.9 236 61.0
GSVIVG01001001001 Vitis vinifera HOM05D007039 ORTHO05D008886 3.4e-73 278.9 237 58.6
Migut.F00878 Erythranthe guttata HOM05D007039 ORTHO05D008886 4.4e-73 278.5 233 60.9
Cfa011268 Carpinus fangiana HOM05D007039 ORTHO05D008886 5.7e-73 278.1 237 61.2
FAN06G3803 Fragaria x ananassa HOM05D007039 ORTHO05D008886 7.5e-73 277.7 236 60.2
FAN01G2006 Fragaria x ananassa HOM05D007039 ORTHO05D008886 2.9e-72 275.8 236 60.6
Manes.07G087400 Manihot esculenta HOM05D007039 ORTHO05D008886 2.9e-72 275.8 236 59.7
Dinv09617 Davidia involucrata HOM05D007039 ORTHO05D008886 3.7e-72 275.4 214 64.5
CSS0047124 Camellia sinensis var. sinensis HOM05D007039 ORTHO05D008886 4.9e-72 275.0 237 61.6
Dinv11837 Davidia involucrata HOM05D007039 ORTHO05D008886 6.4e-72 274.6 237 59.9
Lsat_1_v5_gn_8_24101 Lactuca sativa HOM05D007039 ORTHO05D008886 1.8e-71 273.1 236 59.7
FAN03G1588 Fragaria x ananassa HOM05D007039 ORTHO05D008886 5.4e-71 271.6 236 59.3
CSS0023700 Camellia sinensis var. sinensis HOM05D007039 ORTHO05D008886 3.5e-70 268.9 237 59.9
SGA_v2.0_scaffold62G21336 Striga asiatica HOM05D007039 ORTHO05D008886 3.5e-70 268.9 237 59.1
QL04p044873 Quercus lobata HOM05D007039 ORTHO05D008886 5.9e-70 268.1 237 59.9
PSO384G1372 Papaver somniferum HOM05D007039 ORTHO05D008886 1.3e-69 266.9 234 58.5
vmacro10308 Vaccinium macrocarpon HOM05D007039 ORTHO05D008886 1.7e-69 266.5 283 52.3
Potri.010G238700 Populus trichocarpa HOM05D007039 ORTHO05D008886 2.3e-69 266.2 237 57.8
unitig_748.g8774 Utricularia gibba HOM05D007039 ORTHO05D008886 3.9e-69 265.4 237 58.6
PSO339G1176 Papaver somniferum HOM05D007039 ORTHO05D008886 5.0e-69 265.0 234 58.1
Potri.008G020500 Populus trichocarpa HOM05D007039 ORTHO05D008886 5.0e-69 265.0 236 57.6
MD07G1059500 Malus domestica HOM05D007039 ORTHO05D008886 6.6e-69 264.6 237 58.2
Sabra10G0186900 Salix brachista HOM05D007039 ORTHO05D008886 8.6e-69 264.2 238 56.7
FAN10G1571 Fragaria x ananassa HOM05D007039 ORTHO05D008886 1.9e-68 263.1 250 56.4
Thecc.07G140700 Theobroma cacao HOM05D007039 ORTHO05D008886 2.5e-68 262.7 238 55.0
Nn6g34917 Nelumbo nucifera HOM05D007039 ORTHO05D008886 3.3e-68 262.3 236 57.2
Hund22275 Selenicereus undatus HOM05D007039 ORTHO05D008886 5.6e-68 261.5 237 56.5
Ah.06g186600 Amaranthus hybridus HOM05D007039 ORTHO05D008886 1.2e-67 260.4 238 56.7
THA.LOC104801579 Tarenaya hassleriana HOM05D007039 ORTHO05D008886 2.8e-67 259.2 237 56.5
AUR62041513 Chenopodium quinoa HOM05D007039 ORTHO05D008886 6.2e-67 258.1 238 54.6
Duzib106G1061 Durio zibethinus HOM05D007039 ORTHO05D008886 1.0e-66 257.3 238 55.0
COL.COLO4_17444 Corchorus olitorius HOM05D007039 ORTHO05D008886 4.0e-66 255.4 238 55.9
Peaxi162Scf00195g01020 Petunia axillaris HOM05D007039 ORTHO05D008886 6.8e-66 254.6 238 57.6
Sc20g0001160 Simmondsia chinensis HOM05D007039 ORTHO05D008886 8.9e-66 254.2 239 55.2
Gohir.A06G173100 Gossypium hirsutum HOM05D007039 ORTHO05D008886 1.5e-65 253.4 238 54.2
Gorai.010G214000 Gossypium raimondii HOM05D007039 ORTHO05D008886 3.4e-65 252.3 238 54.2
Gorai.010G214100 Gossypium raimondii HOM05D007039 ORTHO05D008886 3.4e-65 252.3 238 54.2
Nitab4.5_0003927g0060 Nicotiana tabacum HOM05D007039 ORTHO05D008886 3.4e-65 252.3 238 56.7
Gohir.D06G182700 Gossypium hirsutum HOM05D007039 ORTHO05D008886 4.4e-65 251.9 238 54.2
Gohir.D06G183100 Gossypium hirsutum HOM05D007039 ORTHO05D008886 1.7e-64 250.0 238 54.2
Aqoxy2G01207 Aquilegia oxysepala HOM05D007039 ORTHO05D008886 6.4e-64 248.1 237 54.0
Gohir.D06G183000 Gossypium hirsutum HOM05D007039 ORTHO05D008886 1.4e-63 246.9 238 53.8
AUR62042080 Chenopodium quinoa HOM05D007039 ORTHO05D008886 3.2e-63 245.7 224 54.5
EL10Ac4g08687 Beta vulgaris HOM05D007039 ORTHO05D008886 1.6e-62 243.4 237 52.7
MELO3C019894.2 Cucumis melo HOM05D007039 ORTHO05D008886 1.0e-61 240.7 237 53.6
HPP92_006806 Vanilla planifolia HOM05D007039 ORTHO05D008886 1.3e-61 240.4 233 51.9
Sed0014501 Sechium edule HOM05D007039 ORTHO05D008886 1.7e-61 240.0 237 52.7
Zm00001eb147230 Zea mays HOM05D007039 ORTHO05D008886 3.9e-61 238.8 236 53.4
Zm00001eb366890 Zea mays HOM05D007039 ORTHO05D008886 1.1e-60 237.3 236 53.4
TAR633G1803 Trochodendron aralioides HOM05D007039 ORTHO05D008886 6.2e-59 231.5 235 50.6
Os01g0859400 Oryza sativa ssp. japonica HOM05D007039 ORTHO05D008886 6.8e-58 228.0 237 50.6
ClCG08G008260 Citrullus lanatus HOM05D007039 ORTHO05D008886 2.6e-57 226.1 272 47.1
Cpa.g.sc56.15 Carica papaya HOM05D007039 ORTHO05D008886 5.4e-55 218.4 184 56.5
ECA233G2799 Erigeron canadensis HOM05D007039 ORTHO05D008886 2.5e-52 209.5 181 58.0
HPP92_009745 Vanilla planifolia HOM05D007039 ORTHO05D008886 3.3e-52 209.1 231 46.8
HPP92_009768 Vanilla planifolia HOM05D007039 ORTHO05D008886 4.7e-51 205.3 231 46.3
Oeu036841.1 Olea europaea HOM05D007039 ORTHO05D008886 1.3e-45 187.2 180 56.1
FvH4_7g05130 Fragaria vesca HOM05D007039 ORTHO05D008886 2.5e-44 183.0 178 55.1
PGSC0003DMG400023289 Solanum tuberosum HOM05D007039 ORTHO05D008886 3.3e-44 182.6 180 52.8
Mapoly0010s0050 Marchantia polymorpha HOM05D007039 ORTHO05D008886 9.6e-44 181.0 227 42.7
Zm00001eb092690 Zea mays HOM05D007039 ORTHO05D008886 2.8e-43 179.5 231 42.0
Os12g0152800 Oryza sativa ssp. japonica HOM05D007039 ORTHO05D008886 6.2e-43 178.3 234 41.0
Eucgr.J00257 Eucalyptus grandis HOM05D007039 ORTHO05D008886 1.1e-42 177.6 179 53.1
PGR142G0235 Punica granatum HOM05D007039 ORTHO05D008886 2.6e-41 172.9 179 53.6
SMO367G0592 Selaginella moellendorffii HOM05D007039 ORTHO05D008886 4.4e-41 172.2 227 44.1
Pp3c15_5790 Physcomitrium patens HOM05D007039 ORTHO05D008886 1.7e-40 170.2 229 41.0
MSTRG.9060 Avicennia marina HOM05D007039 ORTHO05D008886 1.1e-39 167.5 179 52.0
CBR_g32363 Chara braunii HOM05D007039 ORTHO05D008886 9.6e-36 154.5 201 42.3
AagrBONN_evm.TU.Sc2ySwM_228.3073 Anthoceros agrestis HOM05D007039 ORTHO05D008886 1.4e-34 150.6 214 40.7
CSS0008887 Camellia sinensis var. sinensis HOM05D007039 ORTHO05D008886 1.4e-34 150.6 206 45.1
CsaV3_6G004220 Cucumis sativus L. HOM05D007039 ORTHO05D008886 2.4e-34 149.8 180 45.6
Nitab4.5_0000691g0070 Nicotiana tabacum HOM05D007039 ORTHO05D008886 1.2e-33 147.5 214 43.9
AagrBONN_evm.TU.Sc2ySwM_362.1562 Anthoceros agrestis HOM05D007039 ORTHO05D008886 2.6e-33 146.4 229 36.2
CSS0041399 Camellia sinensis var. sinensis HOM05D007039 ORTHO05D008886 3.5e-30 136.0 166 50.0
CDE08G0883 Ceratophyllum demersum HOM05D007039 ORTHO05D008886 2.5e-28 129.8 139 42.4
Zm00001eb197030 Zea mays HOM05D007039 ORTHO05D008886 1.9e-23 113.6 178 36.5
DCAR_019005 Daucus carota HOM05D007039 ORTHO05D008886 2.1e-22 110.2 110 50.9
MD04G1248500 Malus domestica HOM05D007039 ORTHO05D008886 4.6e-22 109.0 106 54.7
Cre01.g018100 Chlamydomonas reinhardtii HOM05D007039 ORTHO05D008886 1.5e-20 104.0 171 34.5
SMO353G0277 Selaginella moellendorffii HOM05D007039 ORTHO05D008886 1.8e-18 97.1 179 35.2
PRCOL_00002076 Prasinoderma coloniale HOM05D007039 ORTHO05D008886 4.6e-14 82.4 114 33.3


User provided reference genes

Program Settings