Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G278800 Glycine max HOM05D004855 ORTHO05D005656 2.0e-55 218.8 107 100.0
Glyma.20G111700 Glycine max HOM05D004855 ORTHO05D005656 9.5e-53 209.9 107 95.3
VMungo0720G0894 Vigna mungo HOM05D004855 ORTHO05D005656 3.2e-48 194.9 107 88.8
Phvul.007G022600 Phaseolus vulgaris HOM05D004855 ORTHO05D005656 4.1e-48 194.5 107 87.9
Lj5g0001855 Lotus japonicus HOM05D004855 ORTHO05D005656 4.7e-44 181.0 107 82.2
Lalb_Chr21g0309181 Lupinus albus HOM05D004855 ORTHO05D005656 8.1e-44 180.3 107 82.2
TPR.G20467 Trifolium pratense HOM05D004855 ORTHO05D005656 5.4e-40 167.5 108 77.8
Ca_25663_v3 Cicer arietinum L. HOM05D004855 ORTHO05D005656 1.6e-39 166.0 108 75.0
TPR.G2466 Trifolium pratense HOM05D004855 ORTHO05D005656 1.6e-39 166.0 108 76.9
TPR.G762 Trifolium pratense HOM05D004855 ORTHO05D005656 4.6e-39 164.5 108 76.9
Cfa021941 Carpinus fangiana HOM05D004855 ORTHO05D005656 6.0e-39 164.1 107 73.8
Medtr1g112020 Medicago truncatula HOM05D004855 ORTHO05D005656 5.1e-38 161.0 108 74.1
Medtr1g112040 Medicago truncatula HOM05D004855 ORTHO05D005656 8.6e-38 160.2 108 74.1
GSVIVG01000981001 Vitis vinifera HOM05D004855 ORTHO05D005656 7.3e-37 157.1 108 74.1
CsaV3_5G035370 Cucumis sativus L. HOM05D004855 ORTHO05D005656 9.6e-37 156.8 107 69.2
MELO3C012349.2 Cucumis melo HOM05D004855 ORTHO05D005656 1.6e-36 156.0 107 68.2
Sed0005547 Sechium edule HOM05D004855 ORTHO05D005656 3.6e-36 154.8 107 68.2
QL04p046696 Quercus lobata HOM05D004855 ORTHO05D005656 6.2e-36 154.1 106 70.8
Sabra10G0187300 Salix brachista HOM05D004855 ORTHO05D005656 1.1e-35 153.3 107 67.3
Dinv10926 Davidia involucrata HOM05D004855 ORTHO05D005656 2.4e-35 152.1 108 70.4
Nn6g34881 Nelumbo nucifera HOM05D004855 ORTHO05D005656 3.1e-35 151.8 108 67.6
Actinidia31268 Actinidia chinensis HOM05D004855 ORTHO05D005656 4.0e-35 151.4 107 65.4
Cfa016620 Carpinus fangiana HOM05D004855 ORTHO05D005656 1.2e-34 149.8 107 64.5
Haze_19625 Corylus avellana HOM05D004855 ORTHO05D005656 2.0e-34 149.1 107 64.5
CiPaw.09G015100 Carya illinoinensis HOM05D004855 ORTHO05D005656 3.4e-34 148.3 107 61.7
TAR633G0291 Trochodendron aralioides HOM05D004855 ORTHO05D005656 4.4e-34 147.9 108 67.6
CiPaw.13G039700 Carya illinoinensis HOM05D004855 ORTHO05D005656 7.6e-34 147.1 107 68.2
GSVIVG01033859001 Vitis vinifera HOM05D004855 ORTHO05D005656 9.9e-34 146.7 108 65.7
CSS0028852 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 4.9e-33 144.4 107 63.6
Manes.09G054300 Manihot esculenta HOM05D004855 ORTHO05D005656 6.4e-33 144.1 108 65.7
Potri.010G239200 Populus trichocarpa HOM05D004855 ORTHO05D005656 6.4e-33 144.1 107 62.6
Duzib106G1994 Durio zibethinus HOM05D004855 ORTHO05D005656 1.9e-32 142.5 107 63.6
Dinv21197 Davidia involucrata HOM05D004855 ORTHO05D005656 2.4e-32 142.1 108 63.0
Thecc.05G090600 Theobroma cacao HOM05D004855 ORTHO05D005656 3.2e-32 141.7 107 62.6
Eucgr.K02028 Eucalyptus grandis HOM05D004855 ORTHO05D005656 7.1e-32 140.6 107 60.7
Ciclev10013171m.g Citrus clementina HOM05D004855 ORTHO05D005656 1.6e-31 139.4 108 63.0
Gohir.A11G319200 Gossypium hirsutum HOM05D004855 ORTHO05D005656 1.6e-31 139.4 107 59.8
Gorai.007G368300 Gossypium raimondii HOM05D004855 ORTHO05D005656 1.6e-31 139.4 107 59.8
ClCG10G018900 Citrullus lanatus HOM05D004855 ORTHO05D005656 2.1e-31 139.0 107 57.9
MD14G1024000 Malus domestica HOM05D004855 ORTHO05D005656 2.7e-31 138.7 107 59.8
arahy.Tifrunner.gnm1.ann1.DCW42B Arachis hypogaea HOM05D004855 ORTHO05D005656 3.5e-31 138.3 108 61.1
Potri.006G211900 Populus trichocarpa HOM05D004855 ORTHO05D005656 4.6e-31 137.9 108 61.1
Potri.006G212100 Populus trichocarpa HOM05D004855 ORTHO05D005656 4.6e-31 137.9 108 61.1
Carub.0007s2265 Capsella rubella HOM05D004855 ORTHO05D005656 6.0e-31 137.5 107 58.9
Gohir.D11G338500 Gossypium hirsutum HOM05D004855 ORTHO05D005656 6.0e-31 137.5 107 58.9
THA.LOC104804847 Tarenaya hassleriana HOM05D004855 ORTHO05D005656 7.8e-31 137.1 107 61.7
Prupe.7G108800 Prunus persica HOM05D004855 ORTHO05D005656 1.0e-30 136.7 107 57.9
Sp5g09660 Schrenkiella parvula HOM05D004855 ORTHO05D005656 1.0e-30 136.7 107 59.8
TWI74G1617 Tripterygium wilfordii HOM05D004855 ORTHO05D005656 1.0e-30 136.7 108 61.1
Atru.chr8.1484 Acer truncatum HOM05D004855 ORTHO05D005656 1.3e-30 136.3 108 63.0
AT4G18590 Arabidopsis thaliana HOM05D004855 ORTHO05D005656 1.3e-30 136.3 107 58.9
MELO3C009479.2 Cucumis melo HOM05D004855 ORTHO05D005656 1.3e-30 136.3 107 57.9
RcHm_v2.0_Chr3g0473901 Rosa chinensis HOM05D004855 ORTHO05D005656 1.3e-30 136.3 107 58.9
SalBow3G4427 Salvia bowleyana HOM05D004855 ORTHO05D005656 1.7e-30 136.0 107 61.7
SGA_v2.0_scaffold31G12906 Striga asiatica HOM05D004855 ORTHO05D005656 2.3e-30 135.6 103 62.1
AUR62030671 Chenopodium quinoa HOM05D004855 ORTHO05D005656 3.0e-30 135.2 108 64.8
Sc20g0006340 Simmondsia chinensis HOM05D004855 ORTHO05D005656 3.0e-30 135.2 107 60.7
TWI77G0302 Tripterygium wilfordii HOM05D004855 ORTHO05D005656 3.0e-30 135.2 108 60.2
CANSAT64G1995 Cannabis sativa HOM05D004855 ORTHO05D005656 3.9e-30 134.8 107 57.9
Sopen10g031710 Solanum pennellii HOM05D004855 ORTHO05D005656 3.9e-30 134.8 108 57.4
AL7G35690 Arabidopsis lyrata HOM05D004855 ORTHO05D005656 5.1e-30 134.4 107 58.9
Aqoxy4G02764 Aquilegia oxysepala HOM05D004855 ORTHO05D005656 6.6e-30 134.0 108 63.0
AT3G52630 Arabidopsis thaliana HOM05D004855 ORTHO05D005656 6.6e-30 134.0 108 60.2
CsaV3_3G037350 Cucumis sativus L. HOM05D004855 ORTHO05D005656 6.6e-30 134.0 107 57.0
PGR142G1385 Punica granatum HOM05D004855 ORTHO05D005656 6.6e-30 134.0 107 57.9
Aa31LG6G1320 Aethionema arabicum HOM05D004855 ORTHO05D005656 8.7e-30 133.7 107 58.9
Lalb_Chr25g0288301 Lupinus albus HOM05D004855 ORTHO05D005656 8.7e-30 133.7 108 61.1
MSTRG.5853 Avicennia marina HOM05D004855 ORTHO05D005656 1.1e-29 133.3 108 60.2
PSO339G3393 Papaver somniferum HOM05D004855 ORTHO05D005656 1.1e-29 133.3 107 62.6
Phvul.001G191000 Phaseolus vulgaris HOM05D004855 ORTHO05D005656 1.5e-29 132.9 107 57.0
THA.LOC104805250 Tarenaya hassleriana HOM05D004855 ORTHO05D005656 1.5e-29 132.9 107 57.0
BcaNung03818 Brassica carinata HOM05D004855 ORTHO05D005656 1.9e-29 132.5 107 57.9
BcaNung06738 Brassica carinata HOM05D004855 ORTHO05D005656 1.9e-29 132.5 107 57.9
CAN.G128.111 Capsicum annuum HOM05D004855 ORTHO05D005656 1.9e-29 132.5 108 58.3
Thhalv10010848m.g Eutrema salsugineum HOM05D004855 ORTHO05D005656 2.5e-29 132.1 107 59.8
PSO384G0979 Papaver somniferum HOM05D004855 ORTHO05D005656 2.5e-29 132.1 107 61.7
Sed0021085 Sechium edule HOM05D004855 ORTHO05D005656 2.5e-29 132.1 107 56.1
BcaC09g51486 Brassica carinata HOM05D004855 ORTHO05D005656 3.3e-29 131.7 107 57.9
BraA01t01006Z Brassica rapa HOM05D004855 ORTHO05D005656 3.3e-29 131.7 107 57.9
Lj1g0021036 Lotus japonicus HOM05D004855 ORTHO05D005656 3.3e-29 131.7 108 60.2
Thhalv10026639m.g Eutrema salsugineum HOM05D004855 ORTHO05D005656 4.3e-29 131.3 107 57.9
AL5G33410 Arabidopsis lyrata HOM05D004855 ORTHO05D005656 5.6e-29 131.0 108 58.3
Cc06_g05940 Coffea canephora HOM05D004855 ORTHO05D005656 5.6e-29 131.0 108 58.3
Lsat_1_v5_gn_8_77441 Lactuca sativa HOM05D004855 ORTHO05D005656 7.3e-29 130.6 107 57.9
PGSC0003DMG400008876 Solanum tuberosum HOM05D004855 ORTHO05D005656 7.3e-29 130.6 107 57.9
FvH4_6g18910 Fragaria vesca HOM05D004855 ORTHO05D005656 9.6e-29 130.2 107 56.1
Oeu047859.1 Olea europaea HOM05D004855 ORTHO05D005656 9.6e-29 130.2 108 59.3
Migut.J01024 Erythranthe guttata HOM05D004855 ORTHO05D005656 1.6e-28 129.4 108 57.4
Carub.0005s1905 Capsella rubella HOM05D004855 ORTHO05D005656 2.8e-28 128.6 108 57.4
CAN.G397.61 Capsicum annuum HOM05D004855 ORTHO05D005656 2.8e-28 128.6 107 56.1
VMungo1383G3261 Vigna mungo HOM05D004855 ORTHO05D005656 2.8e-28 128.6 106 54.7
BcaB02g07823 Brassica carinata HOM05D004855 ORTHO05D005656 4.8e-28 127.9 109 56.9
Nitab4.5_0000692g0080 Nicotiana tabacum HOM05D004855 ORTHO05D005656 4.8e-28 127.9 107 56.1
TPR.G23346 Trifolium pratense HOM05D004855 ORTHO05D005656 4.8e-28 127.9 108 56.5
CARHR162450 Cardamine hirsuta HOM05D004855 ORTHO05D005656 6.2e-28 127.5 108 61.1
Migut.L01788 Erythranthe guttata HOM05D004855 ORTHO05D005656 6.2e-28 127.5 108 59.3
Sopen09g004650 Solanum pennellii HOM05D004855 ORTHO05D005656 6.2e-28 127.5 107 57.0
Glyma.03G196800 Glycine max HOM05D004855 ORTHO05D005656 8.1e-28 127.1 109 57.8
CDE08G1222 Ceratophyllum demersum HOM05D004855 ORTHO05D005656 1.1e-27 126.7 107 57.9
Peaxi162Scf00404g00216 Petunia axillaris HOM05D004855 ORTHO05D005656 1.4e-27 126.3 107 55.1
Ah.10g026130 Amaranthus hybridus HOM05D004855 ORTHO05D005656 1.8e-27 125.9 108 60.2
FAN05G0016 Fragaria x ananassa HOM05D004855 ORTHO05D005656 1.8e-27 125.9 107 55.1
MBI18_g09594_MAGBIO Magnolia biondii HOM05D004855 ORTHO05D005656 4.0e-27 124.8 107 56.1
Ca_09013_v3 Cicer arietinum L. HOM05D004855 ORTHO05D005656 6.9e-27 124.0 108 56.5
MD12G1025300 Malus domestica HOM05D004855 ORTHO05D005656 6.9e-27 124.0 103 51.5
Medtr7g104870 Medicago truncatula HOM05D004855 ORTHO05D005656 9.0e-27 123.6 107 55.1
CANSAT78G0615 Cannabis sativa HOM05D004855 ORTHO05D005656 1.2e-26 123.2 107 55.1
FAN02G3816 Fragaria x ananassa HOM05D004855 ORTHO05D005656 1.2e-26 123.2 107 54.2
Os01g0253600 Oryza sativa ssp. japonica HOM05D004855 ORTHO05D005656 1.2e-26 123.2 107 54.2
Psat3g032240 Pisum sativum HOM05D004855 ORTHO05D005656 2.2e-25 119.0 111 53.2
ClCG05G021800 Citrullus lanatus HOM05D004855 ORTHO05D005656 1.1e-24 116.7 85 62.4
Rhsim02G0090500 Rhododendron simsii HOM05D004855 ORTHO05D005656 1.1e-24 116.7 85 64.7
Zm00001eb333640 Zea mays HOM05D004855 ORTHO05D005656 1.9e-24 115.9 107 52.3
BolC1t01228H Brassica oleracea HOM05D002603 ORTHO05D002907 3.2e-24 115.2 95 56.8
QL07p038661 Quercus lobata HOM05D004855 ORTHO05D005656 3.2e-24 115.2 99 55.6
Sp7g15440 Schrenkiella parvula HOM05D002603 ORTHO05D002907 5.4e-24 114.4 98 56.1
vmacro07416 Vaccinium macrocarpon HOM05D004855 ORTHO05D005656 5.4e-24 114.4 89 60.7
RhsimUnG0050400 Rhododendron simsii HOM05D000314 ORTHO05D000189 7.1e-24 114.0 87 60.9
Zm00001eb127650 Zea mays HOM05D004855 ORTHO05D005656 9.3e-24 113.6 107 51.4
Manes.10G061800 Manihot esculenta HOM05D004855 ORTHO05D005656 2.1e-23 112.5 87 58.6
ATR0706G105 Amborella trichopoda HOM05D004855 ORTHO05D005656 4.6e-23 111.3 107 51.4
Rhsim03G0015500 Rhododendron simsii HOM05D004855 ORTHO05D005656 4.6e-23 111.3 89 60.7
Solyc10g081210.3 Solanum lycopersicum HOM05D004855 ORTHO05D005656 6.0e-23 110.9 90 56.7
CSS0024102 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 1.3e-22 109.8 86 60.5
Nitab4.5_0000062g0480 Nicotiana tabacum HOM05D004855 ORTHO05D005656 2.3e-22 109.0 84 58.3
Nitab4.5_0003808g0090 Nicotiana tabacum HOM05D004855 ORTHO05D005656 2.3e-22 109.0 84 58.3
ECA236G2758 Erigeron canadensis HOM05D004855 ORTHO05D005656 3.0e-22 108.6 107 46.7
Eucgr.K02554 Eucalyptus grandis HOM05D004855 ORTHO05D005656 3.0e-22 108.6 107 51.4
CSS0041239 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 5.1e-22 107.8 86 59.3
SEGI_35741 Sequoiadendron giganteum HOM05D004855 ORTHO05D005656 6.7e-22 107.5 108 47.2
COL.COLO4_29712 Corchorus olitorius HOM05D004855 ORTHO05D005656 8.7e-22 107.1 91 56.0
CARHR225430 Cardamine hirsuta HOM05D004855 ORTHO05D005656 1.5e-21 106.3 86 58.1
Duzib093G1614 Durio zibethinus HOM05D004855 ORTHO05D005656 5.6e-21 104.4 93 53.8
EL10Ac2g02589 Beta vulgaris HOM05D004855 ORTHO05D005656 1.6e-20 102.8 88 56.8
A01p10600 Brassica napus HOM05D002603 ORTHO05D002907 3.7e-20 101.7 85 57.6
C01p12540 Brassica napus HOM05D002603 ORTHO05D002907 3.7e-20 101.7 85 57.6
Cpa.g.sc5.8 Carica papaya HOM05D004855 ORTHO05D005656 4.8e-20 101.3 85 58.8
Sabra06G0163300 Salix brachista HOM05D004855 ORTHO05D005656 4.8e-20 101.3 87 56.3
PGSC0003DMG400028113 Solanum tuberosum HOM05D004855 ORTHO05D005656 8.1e-20 100.5 94 51.1
Hund19922 Selenicereus undatus HOM05D004855 ORTHO05D005656 2.4e-19 99.0 86 57.0
unitig_749.g14301 Utricularia gibba HOM05D004855 ORTHO05D005656 7.6e-18 94.0 71 57.7
HPP92_016958 Vanilla planifolia HOM05D004855 ORTHO05D005656 1.3e-17 93.2 90 50.0
Zm00001eb121860 Zea mays HOM05D003776 ORTHO05D005656 1.7e-17 92.8 89 50.6
AagrBONN_evm.TU.Sc2ySwM_362.2757 Anthoceros agrestis HOM05D004855 ORTHO05D005656 2.2e-17 92.4 109 43.1
Mapoly0013s0016 Marchantia polymorpha HOM05D004855 ORTHO05D005656 1.1e-16 90.1 106 38.7
Pp3c2_28010 Physcomitrium patens HOM05D004855 ORTHO05D005656 1.4e-16 89.7 108 41.7
AagrBONN_evm.TU.Sc2ySwM_117.343 Anthoceros agrestis HOM05D004855 ORTHO05D005656 1.9e-16 89.4 109 42.2
CBR_g41290 Chara braunii HOM05D004855 ORTHO05D005656 5.1e-14 81.3 111 41.4
Peaxi162Scf00153g00093 Petunia axillaris HOM05D004855 ORTHO05D005656 1.5e-13 79.7 65 52.3
Sed0001253 Sechium edule HOM05D004855 ORTHO05D005656 1.5e-13 79.7 85 43.5
SHI23843 Sapria himalayana HOM05D004855 ORTHO05D005656 3.7e-12 75.1 84 46.4
Psat3g176360 Pisum sativum HOM05D004855 ORTHO05D005656 4.8e-12 74.7 87 47.1
MCO11G135 Micromonas commoda HOM05D004855 ORTHO05D005656 2.4e-11 72.4 110 37.3
Peaxi162Scf00153g00101 Petunia axillaris HOM05D004855 ORTHO05D005656 2.6e-10 68.9 65 47.7
PRCOL_00005602 Prasinoderma coloniale HOM05D004855 ORTHO05D005656 2.6e-10 68.9 109 36.7
Zm00001eb007300 Zea mays HOM05D004855 ORTHO05D005656 1.7e-09 66.2 71 43.7
Zm00001eb198520 Zea mays HOM05D012833 ORTHO05D005656 1.7e-09 66.2 71 43.7
arahy.Tifrunner.gnm1.ann1.NID4K0 Arachis hypogaea HOM05D004855 ORTHO05D005656 3.8e-09 65.1 58 53.4
FvH4_2g12760 Fragaria vesca HOM05D004855 ORTHO05D005656 4.6e-07 58.2 64 42.2


User provided reference genes

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