Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G278400 Glycine max HOM05D006196 ORTHO05D007758 3.2e-184 648.3 328 100.0
Glyma.20G111300 Glycine max HOM05D006196 ORTHO05D007758 2.2e-169 599.0 332 93.4
VMungo0720G0291 Vigna mungo HOM05D006196 ORTHO05D007758 1.9e-152 542.7 331 85.2
Phvul.007G023000 Phaseolus vulgaris HOM05D006196 ORTHO05D007758 1.2e-151 540.0 331 85.5
Ca_25660_v3 Cicer arietinum L. HOM05D006196 ORTHO05D007758 4.1e-139 498.4 334 77.5
Lj5g0013601 Lotus japonicus HOM05D006196 ORTHO05D007758 7.0e-139 497.7 330 77.6
arahy.Tifrunner.gnm1.ann1.EL78PJ Arachis hypogaea HOM05D006196 ORTHO05D007758 1.1e-136 490.3 338 75.1
arahy.Tifrunner.gnm1.ann1.N25XM0 Arachis hypogaea HOM05D006196 ORTHO05D007758 1.1e-136 490.3 338 75.1
Psat0s1903g0040 Pisum sativum HOM05D006196 ORTHO05D007758 4.7e-135 485.0 333 76.0
Lalb_Chr06g0166391 Lupinus albus HOM05D006196 ORTHO05D007758 1.7e-132 476.5 332 73.5
Medtr1g111960 Medicago truncatula HOM05D006196 ORTHO05D007758 5.9e-130 468.0 332 72.0
TPR.G2427 Trifolium pratense HOM05D006196 ORTHO05D007758 4.3e-128 461.8 332 74.1
Lj6g0028083 Lotus japonicus HOM05D006196 ORTHO05D007758 1.5e-117 426.8 340 65.6
Medtr1g050385 Medicago truncatula HOM05D006196 ORTHO05D007758 3.3e-112 409.1 350 58.6
TPR.G10627 Trifolium pratense HOM05D006196 ORTHO05D007758 1.2e-111 407.1 351 60.1
Glyma.10G111100 Glycine max HOM05D006196 ORTHO05D007758 9.9e-109 397.5 346 61.6
Haze_03294 Corylus avellana HOM05D006196 ORTHO05D007758 8.4e-108 394.4 330 61.8
CSS0023098 Camellia sinensis var. sinensis HOM05D006196 ORTHO05D007758 1.1e-107 394.0 331 60.4
Lalb_Chr01g0010431 Lupinus albus HOM05D006196 ORTHO05D007758 3.2e-107 392.5 375 56.5
Thecc.10G115000 Theobroma cacao HOM05D006196 ORTHO05D007758 7.1e-107 391.3 334 59.9
Atru.chr12.1044 Acer truncatum HOM05D006196 ORTHO05D007758 6.6e-105 384.8 325 61.2
Manes.07G086900 Manihot esculenta HOM05D006196 ORTHO05D007758 6.6e-105 384.8 334 59.3
QL04p046737 Quercus lobata HOM05D006196 ORTHO05D007758 1.2e-103 380.6 354 56.5
Psat6g093840 Pisum sativum HOM05D006196 ORTHO05D007758 4.7e-103 378.6 342 58.2
COL.COLO4_29746 Corchorus olitorius HOM05D006196 ORTHO05D007758 8.1e-103 377.9 335 56.1
Duzib114G0383 Durio zibethinus HOM05D006196 ORTHO05D007758 1.1e-102 377.5 334 57.8
CiPaw.13G040700 Carya illinoinensis HOM05D006196 ORTHO05D007758 5.8e-101 371.7 320 60.9
Lj2C33T17 Lonicera japonica HOM05D006196 ORTHO05D007758 4.9e-100 368.6 336 57.4
Nitab4.5_0002586g0080 Nicotiana tabacum HOM05D006196 ORTHO05D007758 8.4e-100 367.9 333 55.6
Actinidia18628 Actinidia chinensis HOM05D006196 ORTHO05D007758 2.4e-99 366.3 330 55.8
Manes.10G062200 Manihot esculenta HOM05D006196 ORTHO05D007758 4.2e-99 365.5 331 55.9
Nitab4.5_0003590g0020 Nicotiana tabacum HOM05D006196 ORTHO05D007758 1.2e-98 364.0 333 55.6
TAR623G1022 Trochodendron aralioides HOM05D006196 ORTHO05D007758 3.5e-98 362.5 326 56.7
Gorai.012G020000 Gossypium raimondii HOM05D006196 ORTHO05D007758 6.0e-98 361.7 333 58.0
Rhsim03G0097800 Rhododendron simsii HOM05D006196 ORTHO05D007758 6.0e-98 361.7 345 54.5
Hma1.2p1_0457F.1_g156990 Hydrangea macrophylla HOM05D006196 ORTHO05D007758 7.8e-98 361.3 304 60.5
PGSC0003DMG400023969 Solanum tuberosum HOM05D006196 ORTHO05D007758 1.0e-97 360.9 331 54.4
TWI38G1704 Tripterygium wilfordii HOM05D006196 ORTHO05D007758 1.3e-97 360.5 336 58.0
Gohir.A05G398600 Gossypium hirsutum HOM05D006196 ORTHO05D007758 3.9e-97 359.0 333 57.7
Solyc11g006830.2 Solanum lycopersicum HOM05D006196 ORTHO05D007758 5.1e-97 358.6 329 54.4
Sopen11g002750 Solanum pennellii HOM05D006196 ORTHO05D007758 5.1e-97 358.6 329 54.4
CAN.G645.29 Capsicum annuum HOM05D006196 ORTHO05D007758 6.6e-97 358.2 330 53.6
Gohir.D04G017300 Gossypium hirsutum HOM05D006196 ORTHO05D007758 8.7e-97 357.8 333 57.7
Cpa.g.sc56.1 Carica papaya HOM05D006196 ORTHO05D007758 1.4e-94 350.5 342 54.4
Oeu026604.1 Olea europaea HOM05D006196 ORTHO05D007758 2.6e-93 346.3 333 51.7
CANSAT56G0980 Cannabis sativa HOM05D006196 ORTHO05D007758 7.6e-93 344.7 329 54.7
ClCG08G008290 Citrullus lanatus HOM05D006196 ORTHO05D007758 2.2e-92 343.2 326 56.4
Potri.010G239700 Populus trichocarpa HOM05D006196 ORTHO05D007758 1.4e-91 340.5 330 52.4
GSVIVG01010724001 Vitis vinifera HOM05D006196 ORTHO05D007758 1.6e-90 337.0 265 61.5
Sabra10G0187700 Salix brachista HOM05D006196 ORTHO05D007758 4.6e-90 335.5 330 52.1
ECA238G1493 Erigeron canadensis HOM05D006196 ORTHO05D007758 7.9e-90 334.7 304 56.6
Sabra08G0013000 Salix brachista HOM05D006196 ORTHO05D007758 3.9e-89 332.4 329 51.1
MELO3C019897.2 Cucumis melo HOM05D006196 ORTHO05D007758 5.1e-89 332.0 328 54.3
Cc02_g09600 Coffea canephora HOM05D006196 ORTHO05D007758 6.6e-89 331.6 338 50.3
Sed0008038 Sechium edule HOM05D006196 ORTHO05D007758 1.1e-88 330.9 342 54.1
Lsat_1_v5_gn_2_104380 Lactuca sativa HOM05D006196 ORTHO05D007758 1.5e-88 330.5 313 53.4
THA.LOC104811342 Tarenaya hassleriana HOM05D006196 ORTHO05D007758 1.5e-88 330.5 310 54.8
CsaV3_6G004260 Cucumis sativus L. HOM05D006196 ORTHO05D007758 4.3e-88 328.9 328 53.7
Potri.008G019700 Populus trichocarpa HOM05D006196 ORTHO05D007758 1.3e-87 327.4 332 50.0
Sed0021157 Sechium edule HOM05D006196 ORTHO05D007758 1.3e-87 327.4 339 52.5
MSTRG.27569 Avicennia marina HOM05D006196 ORTHO05D007758 2.1e-87 326.6 331 49.8
MSTRG.9056 Avicennia marina HOM05D006196 ORTHO05D007758 8.1e-87 324.7 336 49.4
Migut.F00871 Erythranthe guttata HOM05D006196 ORTHO05D007758 5.3e-86 322.0 334 49.1
AT3G54290 Arabidopsis thaliana HOM05D006196 ORTHO05D007758 6.9e-86 321.6 301 55.1
BcaC02g09075 Brassica carinata HOM05D006196 ORTHO05D007758 6.9e-86 321.6 328 50.0
HanXRQChr11g0342081 Helianthus annuus HOM05D006196 ORTHO05D007758 1.2e-85 320.9 301 54.2
CARHR164220 Cardamine hirsuta HOM05D006196 ORTHO05D007758 2.6e-85 319.7 302 54.6
MBI01_g16486_MAGBIO Magnolia biondii HOM05D006196 ORTHO05D007758 5.8e-85 318.5 334 49.1
AL5G35330 Arabidopsis lyrata HOM05D006196 ORTHO05D007758 1.7e-84 317.0 316 53.5
BcaB02g08483 Brassica carinata HOM05D006196 ORTHO05D007758 1.7e-84 317.0 332 50.3
HanXRQChr07g0194291 Helianthus annuus HOM05D006196 ORTHO05D007758 2.2e-84 316.6 304 53.9
PSO801G0620 Papaver somniferum HOM05D006196 ORTHO05D007758 2.2e-84 316.6 336 49.1
Sp5g08100 Schrenkiella parvula HOM05D006196 ORTHO05D007758 2.2e-84 316.6 301 54.2
CDE08G0664 Ceratophyllum demersum HOM05D006196 ORTHO05D007758 2.9e-84 316.2 308 49.7
PSO339G1429 Papaver somniferum HOM05D006196 ORTHO05D007758 2.9e-84 316.2 339 49.3
Thhalv10010495m.g Eutrema salsugineum HOM05D006196 ORTHO05D007758 4.9e-84 315.5 300 54.3
A04p05460 Brassica napus HOM05D006196 ORTHO05D007758 6.4e-84 315.1 329 50.8
Carub.0005s2088 Capsella rubella HOM05D006196 ORTHO05D007758 6.4e-84 315.1 301 54.5
SalBow6G5730 Salvia bowleyana HOM05D006196 ORTHO05D007758 1.4e-83 313.9 335 48.7
Aa31sc392G30 Aethionema arabicum HOM05D006196 ORTHO05D007758 1.9e-83 313.5 291 54.3
BraA04t16248Z Brassica rapa HOM05D006196 ORTHO05D007758 5.5e-83 312.0 329 50.5
Prupe.2G067800 Prunus persica HOM05D006196 ORTHO05D007758 2.1e-82 310.1 348 53.4
unitig_37.g12349 Utricularia gibba HOM05D006196 ORTHO05D007758 1.0e-81 307.8 335 48.7
C04p38140 Brassica napus HOM05D006196 ORTHO05D007758 5.1e-81 305.4 329 49.2
SGA_v2.0_scaffold13G06435 Striga asiatica HOM05D006196 ORTHO05D007758 6.7e-81 305.1 381 44.9
BolC8t50558H Brassica oleracea HOM05D006196 ORTHO05D007758 3.3e-80 302.8 300 51.3
Sc09g0005310 Simmondsia chinensis HOM05D006196 ORTHO05D007758 5.6e-80 302.0 322 48.1
C08p29520 Brassica napus HOM05D006196 ORTHO05D007758 9.6e-80 301.2 300 51.0
BraA09t40190Z Brassica rapa HOM05D006196 ORTHO05D007758 1.1e-78 297.7 300 50.3
A09p47290 Brassica napus HOM05D006196 ORTHO05D007758 1.4e-78 297.4 300 50.0
Dinv10931 Davidia involucrata HOM05D006196 ORTHO05D007758 1.4e-78 297.4 252 60.7
Peaxi162Scf00173g00018 Petunia axillaris HOM05D006196 ORTHO05D007758 2.4e-78 296.6 286 53.5
MD07G1059000 Malus domestica HOM05D006196 ORTHO05D007758 2.6e-77 293.1 356 49.2
Hund06787 Selenicereus undatus HOM05D006196 ORTHO05D007758 1.3e-76 290.8 358 45.0
DCAR_019003 Daucus carota HOM05D006196 ORTHO05D007758 2.2e-76 290.0 333 47.1
Ah.06g186650 Amaranthus hybridus HOM05D006196 ORTHO05D007758 1.9e-75 287.0 344 46.5
MD07G1059300 Malus domestica HOM05D006196 ORTHO05D007758 3.2e-75 286.2 362 47.8
Ah.13g074540 Amaranthus hybridus HOM05D006196 ORTHO05D007758 1.2e-74 284.3 323 46.4
Ciclev10015947m.g Citrus clementina HOM05D006196 ORTHO05D007758 1.3e-68 264.2 316 48.1
ATR0820G221 Amborella trichopoda HOM05D006196 ORTHO05D007758 1.6e-66 257.3 242 49.6
BcaB01g00209 Brassica carinata HOM05D006196 ORTHO05D007758 5.5e-59 232.3 236 52.1
BolC4t25389H Brassica oleracea HOM05D006196 ORTHO05D007758 2.0e-56 223.8 201 54.2
Ca_20266_v3 Cicer arietinum L. HOM05D006196 ORTHO05D007758 2.2e-52 210.3 211 52.6
unitig_46.g18638 Utricularia gibba HOM05D006196 ORTHO05D007758 4.2e-51 206.1 177 54.8
HPP92_026086 Vanilla planifolia HOM05D006196 ORTHO05D007758 4.7e-50 202.6 321 39.3
SMO146G0289 Selaginella moellendorffii HOM05D006196 ORTHO05D007758 1.0e-49 201.4 243 42.4
HPP92_025137 Vanilla planifolia HOM05D006196 ORTHO05D007758 2.0e-48 197.2 321 38.9
arahy.Tifrunner.gnm1.ann1.5GK804 Arachis hypogaea HOM05D006196 ORTHO05D007758 1.6e-42 177.6 121 72.7
Os01g0861700 Oryza sativa ssp. japonica HOM05D006196 ORTHO05D007758 1.3e-39 167.9 343 33.2
Zm00001eb147080 Zea mays HOM05D006196 ORTHO05D007758 8.2e-39 165.2 325 32.9
Mapoly0016s0155 Marchantia polymorpha HOM05D006196 ORTHO05D007758 4.5e-37 159.5 214 38.3
arahy.Tifrunner.gnm1.ann1.K1D1LI Arachis hypogaea HOM05D006196 ORTHO05D007758 5.0e-36 156.0 116 69.8
Pp3c13_16840 Physcomitrium patens HOM05D006196 ORTHO05D007758 6.5e-36 155.6 222 36.5
Pp3c12_15440 Physcomitrium patens HOM05D006196 ORTHO05D007758 2.5e-35 153.7 221 37.6
Pp3c16_23090 Physcomitrium patens HOM05D006196 ORTHO05D007758 1.6e-34 151.0 211 38.4
Pp3c16_23080 Physcomitrium patens HOM05D006196 ORTHO05D007758 3.6e-34 149.8 213 38.5
Pp3c25_11830 Physcomitrium patens HOM05D006196 ORTHO05D007758 4.7e-34 149.4 213 38.5
AagrBONN_evm.TU.Sc2ySwM_228.4853 Anthoceros agrestis HOM05D006196 ORTHO05D007758 1.4e-33 147.9 215 37.7
Pp3c3_21020 Physcomitrium patens HOM05D006196 ORTHO05D007758 1.8e-33 147.5 227 37.0
Pp3c6_4750 Physcomitrium patens HOM05D006196 ORTHO05D007758 4.0e-33 146.4 246 34.1
SMO198G0051 Selaginella moellendorffii HOM05D006196 ORTHO05D007758 2.4e-30 137.1 215 34.0
Pp3c25_11860 Physcomitrium patens HOM05D006196 ORTHO05D007758 1.6e-29 134.4 152 43.4
CBR_g31351 Chara braunii HOM05D006196 ORTHO05D007758 1.7e-23 114.4 162 36.4
Actinidia02755 Actinidia chinensis HOM05D006196 ORTHO05D007758 2.1e-18 97.4 82 58.5
Zm00001eb366830 Zea mays HOM05D006196 ORTHO05D007758 8.9e-17 92.0 129 39.5
unitig_46.g18639 Utricularia gibba HOM05D006196 ORTHO05D007758 5.8e-08 62.8 100 38.0
Glyma.06G207650 Glycine max HOM05D002801 ORTHO05D003002 6.4e-07 59.3 42 69.0
FAN10G4038 Fragaria x ananassa HOM05D000548 ORTHO05D001552 7.0e-06 55.8 174 28.7
RcHm_v2.0_Chr1g0333131 Rosa chinensis HOM05D000548 ORTHO05D001552 7.0e-06 55.8 233 21.5


User provided reference genes

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