Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G277400 Glycine max HOM05D004836 ORTHO05D005150 0.0e+00 3104.3 1638 100.0
Glyma.20G112200 Glycine max HOM05D004836 ORTHO05D005150 0.0e+00 2628.6 1669 85.6
Phvul.007G023800 Phaseolus vulgaris HOM05D004836 ORTHO05D005150 0.0e+00 1991.1 1667 69.2
Phvul.003G265300 Phaseolus vulgaris HOM05D004836 ORTHO05D005150 0.0e+00 1827.8 1641 66.5
VMungo0720G3177 Vigna mungo HOM05D004836 ORTHO05D005150 0.0e+00 1686.8 1622 62.8
Lj5g0000015 Lotus japonicus HOM05D004836 ORTHO05D005150 0.0e+00 1560.0 1686 56.8
Lalb_Chr06g0166281 Lupinus albus HOM05D004836 ORTHO05D005150 0.0e+00 1478.4 1700 56.3
Ca_25650_v3 Cicer arietinum L. HOM05D004836 ORTHO05D005150 0.0e+00 1411.0 1700 53.9
Lalb_Chr21g0309081 Lupinus albus HOM05D004836 ORTHO05D005150 0.0e+00 1392.1 1700 52.7
Medtr1g111660 Medicago truncatula HOM05D004836 ORTHO05D005150 0.0e+00 1376.3 1719 51.1
arahy.Tifrunner.gnm1.ann1.LI7RG4 Arachis hypogaea HOM05D004836 ORTHO05D005150 0.0e+00 1329.3 1699 51.6
arahy.Tifrunner.gnm1.ann1.D5NCPP Arachis hypogaea HOM05D004836 ORTHO05D005150 0.0e+00 1271.1 1760 49.3
Psat6g230520 Pisum sativum HOM05D004836 ORTHO05D005150 0.0e+00 1208.4 1714 47.7
TPR.G26309 Trifolium pratense HOM05D004836 ORTHO05D005150 2.5e-301 1039.6 1544 45.6
Haze_09829 Corylus avellana HOM05D004836 ORTHO05D005150 1.2e-183 648.7 1846 35.2
CiPaw.11G204300 Carya illinoinensis HOM05D004836 ORTHO05D005150 4.7e-183 646.7 1849 34.6
QL08p004015 Quercus lobata HOM05D004836 ORTHO05D005150 5.2e-166 590.1 1826 34.3
MD03G1024600 Malus domestica HOM05D004836 ORTHO05D005150 3.4e-141 507.7 1867 32.7
MD11G1029700 Malus domestica HOM05D004836 ORTHO05D005150 4.9e-140 503.8 1900 32.6
Thecc.07G013200 Theobroma cacao HOM05D004836 ORTHO05D005150 1.2e-130 472.6 1884 31.6
Prupe.7G022200 Prunus persica HOM05D004836 ORTHO05D005150 5.1e-121 440.7 1767 31.8
Prupe.5G032900 Prunus persica HOM05D004836 ORTHO05D005150 1.3e-119 436.0 1778 32.1
Duzib213G0869 Durio zibethinus HOM05D004836 ORTHO05D005150 2.2e-116 425.2 1883 30.6
Dinv40862 Davidia involucrata HOM05D004836 ORTHO05D005150 3.0e-113 414.8 1720 30.6
GSVIVG01014692001 Vitis vinifera HOM05D004836 ORTHO05D005150 4.8e-111 407.5 1851 30.8
Manes.03G141700 Manihot esculenta HOM05D004836 ORTHO05D005150 8.1e-111 406.8 1736 30.2
RcHm_v2.0_Chr1g0333641 Rosa chinensis HOM05D004836 ORTHO05D005150 1.6e-106 392.5 1851 28.4
Dinv10337 Davidia involucrata HOM05D004836 ORTHO05D005150 7.9e-106 390.2 1780 30.0
Potri.001G368200 Populus trichocarpa HOM05D004836 ORTHO05D005150 4.3e-104 384.4 1760 29.6
Manes.15G059500 Manihot esculenta HOM05D004836 ORTHO05D005150 1.5e-96 359.4 1682 29.0
PGR083G2228 Punica granatum HOM05D004836 ORTHO05D005150 3.3e-96 358.2 1780 28.5
Atru.chr2.3693 Acer truncatum HOM05D004836 ORTHO05D005150 4.3e-96 357.8 1725 27.8
TAR626G1210 Trochodendron aralioides HOM05D004836 ORTHO05D005150 8.2e-95 353.6 1811 28.9
Gorai.002G100500 Gossypium raimondii HOM05D004836 ORTHO05D005150 1.4e-94 352.8 1908 29.5
Sabra16G0241300 Salix brachista HOM05D004836 ORTHO05D005150 1.2e-90 339.7 1932 27.5
Actinidia37154 Actinidia chinensis HOM05D004836 ORTHO05D005150 1.3e-89 336.3 1748 29.6
FAN10G2990 Fragaria x ananassa HOM05D004836 ORTHO05D005150 1.8e-89 335.9 1670 28.9
TAR624G0729 Trochodendron aralioides HOM05D004836 ORTHO05D005150 2.3e-89 335.5 1823 29.0
Gorai.013G152400 Gossypium raimondii HOM05D004836 ORTHO05D005150 9.7e-88 330.1 1849 28.3
Gohir.D01G061900 Gossypium hirsutum HOM05D004836 ORTHO05D005150 1.6e-87 329.3 1922 27.8
FAN03G2987 Fragaria x ananassa HOM05D004836 ORTHO05D005150 2.8e-87 328.6 1662 29.1
Gohir.A13G132500 Gossypium hirsutum HOM05D004836 ORTHO05D005150 3.7e-87 328.2 1819 28.4
TWI38G0981 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 4.1e-86 324.7 1745 27.5
FvH4_7g06090 Fragaria vesca HOM05D004836 ORTHO05D005150 1.2e-85 323.2 1672 28.6
Rhsim06G0230000 Rhododendron simsii HOM05D004836 ORTHO05D005150 2.6e-85 322.0 1814 27.8
Actinidia05002 Actinidia chinensis HOM05D004836 ORTHO05D005150 5.0e-84 317.8 1843 27.5
Psat2g132120 Pisum sativum HOM05D004836 ORTHO05D005150 1.6e-82 312.8 360 51.1
FAN06G1091 Fragaria x ananassa HOM05D004836 ORTHO05D005150 3.6e-82 311.6 1659 28.3
FAN01G1635 Fragaria x ananassa HOM05D004836 ORTHO05D005150 3.9e-81 308.1 1660 28.4
Ciclev10007227m.g Citrus clementina HOM05D004836 ORTHO05D005150 8.8e-81 307.0 1797 28.6
arahy.Tifrunner.gnm1.ann1.TB163P Arachis hypogaea HOM05D004836 ORTHO05D005150 2.4e-78 298.9 334 53.9
CsaV3_7G011380 Cucumis sativus L. HOM05D004836 ORTHO05D005150 3.1e-78 298.5 1722 28.1
Oeu014362.2 Olea europaea HOM05D004836 ORTHO05D005150 6.9e-78 297.4 1878 27.7
Eucgr.F02046 Eucalyptus grandis HOM05D004836 ORTHO05D005150 7.9e-74 283.9 1727 27.3
Gohir.A01G091700 Gossypium hirsutum HOM05D004836 ORTHO05D005150 1.4e-73 283.1 1705 28.3
Sed0002835 Sechium edule HOM05D004836 ORTHO05D005150 5.1e-73 281.2 1844 28.0
CSS0029600 Camellia sinensis var. sinensis HOM05D004836 ORTHO05D005150 8.8e-73 280.4 1689 27.4
TWI39G0854 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 6.3e-71 274.2 463 49.2
Gohir.D13G135900 Gossypium hirsutum HOM05D004836 ORTHO05D005150 1.8e-70 272.7 1704 27.8
CANSAT11G1576 Cannabis sativa HOM05D004836 ORTHO05D005150 2.0e-69 269.2 795 36.9
Nitab4.5_0007415g0020 Nicotiana tabacum HOM05D004836 ORTHO05D005150 3.8e-68 265.0 2004 26.7
MELO3C024947.2 Cucumis melo HOM05D004836 ORTHO05D005150 5.0e-68 264.6 1743 28.5
Cc05_g14960 Coffea canephora HOM05D004836 ORTHO05D005150 9.4e-67 260.4 1749 26.2
COL.COLO4_09837 Corchorus olitorius HOM05D004836 ORTHO05D005150 8.0e-66 257.3 1709 25.3
Sc16g0008100 Simmondsia chinensis HOM05D004836 ORTHO05D005150 4.0e-65 255.0 1802 26.0
Peaxi162Scf00139g01321 Petunia axillaris HOM05D004836 ORTHO05D005150 2.0e-64 252.7 1865 27.6
CANSAT35G0529 Cannabis sativa HOM05D004836 ORTHO05D005150 3.3e-64 251.9 624 34.5
Migut.M01650 Erythranthe guttata HOM05D004836 ORTHO05D005150 9.7e-64 250.4 840 35.4
Nitab4.5_0002736g0020 Nicotiana tabacum HOM05D004836 ORTHO05D005150 4.1e-62 245.0 2011 26.7
Cpa.g.sc12.114 Carica papaya HOM05D004836 ORTHO05D005150 5.9e-61 241.1 888 29.3
Nn1g03169 Nelumbo nucifera HOM05D004836 ORTHO05D005150 7.7e-61 240.7 1762 27.0
SGA_v2.0_scaffold168G38564 Striga asiatica HOM05D004836 ORTHO05D005150 1.1e-59 236.9 1756 26.8
PGSC0003DMG400022276 Solanum tuberosum HOM05D004836 ORTHO05D005150 7.2e-59 234.2 742 37.9
Psat2g132080 Pisum sativum HOM05D004836 ORTHO05D005150 3.4e-56 225.3 460 37.8
Sc03g0011420 Simmondsia chinensis HOM05D004836 ORTHO05D005150 1.7e-55 223.0 1828 26.1
SGA_v2.0_scaffold171G38861 Striga asiatica HOM05D004836 ORTHO05D005150 2.8e-55 222.2 1818 26.9
MD00G1168400 Malus domestica HOM05D004836 ORTHO05D005150 3.7e-55 221.9 497 45.9
Sopen07g033810 Solanum pennellii HOM05D004836 ORTHO05D005150 1.2e-53 216.9 625 38.6
CSS0003147 Camellia sinensis var. sinensis HOM05D004836 ORTHO05D005150 1.3e-52 213.4 350 42.3
Sc03g0011330 Simmondsia chinensis HOM05D004836 ORTHO05D005150 3.8e-52 211.8 1816 25.5
Solyc07g065600.3 Solanum lycopersicum HOM05D004836 ORTHO05D005150 6.5e-52 211.1 1955 25.1
CAN.G623.12 Capsicum annuum HOM05D004836 ORTHO05D005150 1.9e-51 209.5 846 33.6
ClCG09G021380 Citrullus lanatus HOM05D004836 ORTHO05D005150 1.9e-51 209.5 1584 27.2
Oeu046935.1 Olea europaea HOM05D004836 ORTHO05D005150 2.5e-51 209.1 1638 25.3
TPR.G26295 Trifolium pratense HOM05D004836 ORTHO05D005150 5.5e-51 208.0 173 67.1
Sed0003689 Sechium edule HOM05D004836 ORTHO05D005150 1.4e-46 193.4 838 31.1
THA.LOC104811669 Tarenaya hassleriana HOM05D004836 ORTHO05D005150 1.8e-46 193.0 1940 24.9
Aqoxy4G02292 Aquilegia oxysepala HOM05D004836 ORTHO05D005150 4.2e-43 181.8 1833 25.6
MD11G1030200 Malus domestica HOM05D004836 ORTHO05D005150 1.6e-42 179.9 459 44.4
Sp6g17700 Schrenkiella parvula HOM05D004836 ORTHO05D005150 1.2e-40 173.7 659 34.4
MBI15_g03895_MAGBIO Magnolia biondii HOM05D004836 ORTHO05D005150 1.7e-39 169.9 1746 24.8
HanXRQChr03g0074011 Helianthus annuus HOM05D004836 ORTHO05D005150 2.9e-39 169.1 491 37.5
Hund20644 Selenicereus undatus HOM05D004836 ORTHO05D005150 6.4e-39 167.9 624 35.1
HanXRQChr13g0408421 Helianthus annuus HOM05D004836 ORTHO05D005150 1.1e-38 167.2 1760 24.5
CARHR269190 Cardamine hirsuta HOM05D004836 ORTHO05D005150 1.4e-38 166.8 650 34.8
Lsat_1_v5_gn_9_90560 Lactuca sativa HOM05D004836 ORTHO05D005150 1.4e-38 166.8 1750 23.7
EL10Ac4g07562 Beta vulgaris HOM05D004836 ORTHO05D005150 7.8e-37 161.0 660 33.3
Rhsim04G0012500 Rhododendron simsii HOM05D004836 ORTHO05D005150 6.6e-36 157.9 1493 22.8
Aa31LG3G11720 Aethionema arabicum HOM05D004836 ORTHO05D005150 1.5e-35 156.8 698 33.7
Medtr1g111690 Medicago truncatula HOM05D006281 ORTHO05D005138 1.6e-34 153.3 412 32.5
Carub.0008s1617 Capsella rubella HOM05D004836 ORTHO05D005150 2.1e-34 152.9 1769 24.2
Hund23108 Selenicereus undatus HOM05D004836 ORTHO05D005150 2.1e-34 152.9 1749 24.6
DCAR_013235 Daucus carota HOM05D004836 ORTHO05D005150 2.3e-33 149.4 1863 25.3
Ah.06g181450 Amaranthus hybridus HOM05D004836 ORTHO05D005150 4.9e-31 141.7 351 39.9
AT5G55820 Arabidopsis thaliana HOM05D004836 ORTHO05D005150 1.1e-30 140.6 1818 23.8
Thhalv10012421m.g Eutrema salsugineum HOM05D004836 ORTHO05D005150 5.4e-30 138.3 1780 24.8
AL8G31380 Arabidopsis lyrata HOM05D004836 ORTHO05D005150 7.0e-30 137.9 1845 24.7
AUR62017108 Chenopodium quinoa HOM05D004836 ORTHO05D005150 9.2e-30 137.5 597 27.1
Lj1A890T52 Lonicera japonica HOM05D004836 ORTHO05D005150 1.6e-29 136.7 586 32.6
AUR62036461 Chenopodium quinoa HOM05D004836 ORTHO05D005150 2.3e-28 132.9 602 27.6
Hma1.2p1_1109F.1_g258180 Hydrangea macrophylla HOM05D004836 ORTHO05D005150 3.0e-28 132.5 268 36.2
C03p16240 Brassica napus HOM05D004836 ORTHO05D005150 1.5e-27 130.2 655 31.0
CDE04G0223 Ceratophyllum demersum HOM05D000588 ORTHO05D005150 5.2e-25 121.7 362 43.1
BraA03t10683Z Brassica rapa HOM05D004836 ORTHO05D005150 3.4e-24 119.0 652 31.3
A03p13800 Brassica napus HOM05D004836 ORTHO05D005150 5.8e-24 118.2 652 31.3
BolC3t14046H Brassica oleracea HOM05D004836 ORTHO05D005150 2.2e-23 116.3 650 30.2
vmacro11593 Vaccinium macrocarpon HOM05D004836 ORTHO05D005150 3.2e-22 112.5 272 42.3
TWI39G0173 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 1.5e-19 103.6 193 37.3
Actinidia30399 Actinidia chinensis HOM05D004836 ORTHO05D005150 3.3e-19 102.4 107 50.5
vmacro11592 Vaccinium macrocarpon HOM05D004836 ORTHO05D005150 5.6e-19 101.7 521 25.9
ATR0751G141 Amborella trichopoda HOM05D004836 ORTHO05D005150 1.1e-17 97.4 621 28.2
ECA240G1942 Erigeron canadensis HOM05D004836 ORTHO05D000368 9.9e-16 90.9 503 30.6
MD03G1025800 Malus domestica HOM05D004836 ORTHO05D005150 3.7e-15 89.0 88 61.4
AUR62006337 Chenopodium quinoa HOM05D004836 ORTHO05D005150 8.4e-15 87.8 380 29.2
SEGI_26437 Sequoiadendron giganteum HOM05D014698 ORTHO05D016532 1.2e-13 84.0 415 29.2
HPP92_018201 Vanilla planifolia HOM05D004836 ORTHO05D005150 1.2e-13 84.0 464 24.1
MD00G1168200 Malus domestica HOM05D004836 ORTHO05D005150 1.6e-13 83.6 187 36.9
Medtr8g465700 Medicago truncatula HOM05D000451 ORTHO05D000351 6.0e-13 81.6 112 39.3
Os09g0477700 Oryza sativa ssp. japonica HOM05D028105 ORTHO05D005150 3.9e-12 79.0 276 28.6
unitig_22.g5946 Utricularia gibba HOM05D004836 ORTHO05D005150 1.5e-11 77.0 261 40.2
Lj1A890T51 Lonicera japonica HOM05D004836 ORTHO05D005150 1.4e-09 70.5 247 31.6
AUR62044127 Chenopodium quinoa HOM05D004836 ORTHO05D005150 1.8e-09 70.1 305 27.9
PSO063G5346 Papaver somniferum HOM05D004836 ORTHO05D005150 3.1e-09 69.3 173 31.8
SEGI_04158 Sequoiadendron giganteum HOM05D014698 ORTHO05D016532 6.8e-09 68.2 532 25.0
BcaC01g06394 Brassica carinata HOM05D004836 ORTHO05D005150 1.2e-08 67.4 90 38.9
Actinidia30401 Actinidia chinensis HOM05D004836 ORTHO05D005150 1.5e-08 67.0 67 50.7
TWI39G0060 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 1.5e-08 67.0 292 24.3
CDE02G2584 Ceratophyllum demersum HOM05D004836 ORTHO05D005150 1.7e-07 63.5 51 70.6
Zm00001eb316050 Zea mays HOM05D028105 ORTHO05D005150 1.7e-07 63.5 219 30.1
Mapoly0020s0135 Marchantia polymorpha HOM05D014698 ORTHO05D016532 2.9e-07 62.8 64 51.6
BcaB08g35940 Brassica carinata HOM05D004836 ORTHO05D005150 8.4e-07 61.2 393 24.4


User provided reference genes

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