Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G268000 Glycine max HOM05D004794 ORTHO05D005875 1.6e-189 666.0 347 100.0
Glyma.20G123100 Glycine max HOM05D004794 ORTHO05D005875 1.7e-175 619.4 347 93.7
Phvul.007G034300 Phaseolus vulgaris HOM05D004794 ORTHO05D005875 5.8e-168 594.3 351 88.6
Ca_23704_v3 Cicer arietinum L. HOM05D004794 ORTHO05D005875 2.7e-149 532.3 357 79.8
Ca_30211_v3 Cicer arietinum L. HOM05D004794 ORTHO05D005875 2.7e-149 532.3 357 79.8
Medtr1g109080 Medicago truncatula HOM05D004794 ORTHO05D005875 6.0e-149 531.2 355 79.4
Psat6g222720 Pisum sativum HOM05D004794 ORTHO05D005875 1.8e-148 529.6 354 78.5
Lj5g0022431 Lotus japonicus HOM05D004794 ORTHO05D005875 4.3e-147 525.0 355 80.6
Lalb_Chr02g0145631 Lupinus albus HOM05D004794 ORTHO05D005875 5.0e-143 511.5 352 77.3
arahy.Tifrunner.gnm1.ann1.B80FEM Arachis hypogaea HOM05D004794 ORTHO05D005875 6.5e-143 511.1 334 81.7
arahy.Tifrunner.gnm1.ann1.9SFQ4R Arachis hypogaea HOM05D004794 ORTHO05D005875 1.6e-141 506.5 334 80.8
Lalb_Chr06g0165741 Lupinus albus HOM05D004794 ORTHO05D005875 2.3e-140 502.7 348 77.3
PGR102G0643 Punica granatum HOM05D004794 ORTHO05D005875 5.7e-139 498.0 310 83.5
CiPaw.05G245300 Carya illinoinensis HOM05D004794 ORTHO05D005875 3.4e-136 488.8 314 82.2
QL01p003046 Quercus lobata HOM05D004794 ORTHO05D005875 1.0e-135 487.3 332 78.9
CANSAT01G0565 Cannabis sativa HOM05D004794 ORTHO05D005875 1.7e-135 486.5 332 76.8
Manes.14G109500 Manihot esculenta HOM05D004794 ORTHO05D005875 2.2e-135 486.1 338 78.1
Manes.06G063100 Manihot esculenta HOM05D004794 ORTHO05D005875 1.9e-134 483.0 338 76.6
Prupe.1G320000 Prunus persica HOM05D004794 ORTHO05D005875 1.0e-132 477.2 317 78.2
Thecc.02G215600 Theobroma cacao HOM05D004794 ORTHO05D005875 2.3e-132 476.1 332 76.5
TWI79G0577 Tripterygium wilfordii HOM05D004794 ORTHO05D005875 2.3e-132 476.1 329 76.9
MD13G1032500 Malus domestica HOM05D004794 ORTHO05D005875 3.0e-132 475.7 337 75.1
Cfa015814 Carpinus fangiana HOM05D004794 ORTHO05D005875 5.1e-132 474.9 335 76.4
Eucgr.B02866 Eucalyptus grandis HOM05D004794 ORTHO05D005875 6.7e-132 474.6 336 77.1
MD16G1034600 Malus domestica HOM05D004794 ORTHO05D005875 1.1e-131 473.8 334 74.9
Dinv04904 Davidia involucrata HOM05D004794 ORTHO05D005875 1.5e-131 473.4 308 79.5
Dinv16165 Davidia involucrata HOM05D004794 ORTHO05D005875 1.5e-131 473.4 331 75.2
GSVIVG01011805001 Vitis vinifera HOM05D004794 ORTHO05D005875 3.3e-131 472.2 312 80.1
Actinidia31991 Actinidia chinensis HOM05D004794 ORTHO05D005875 4.4e-131 471.9 306 81.0
Ciclev10015744m.g Citrus clementina HOM05D004794 ORTHO05D005875 5.7e-131 471.5 319 78.1
Gohir.A12G142300 Gossypium hirsutum HOM05D004794 ORTHO05D005875 9.7e-131 470.7 305 81.6
Gohir.D12G147200 Gossypium hirsutum HOM05D004794 ORTHO05D005875 1.3e-130 470.3 305 81.6
Hma1.2p1_0114F.1_g055470 Hydrangea macrophylla HOM05D004794 ORTHO05D005875 1.3e-130 470.3 336 74.4
Gorai.008G158400 Gossypium raimondii HOM05D004794 ORTHO05D005875 1.7e-130 469.9 305 81.6
Nn4g24023 Nelumbo nucifera HOM05D004794 ORTHO05D005875 1.7e-130 469.9 311 79.7
Atru.chr11.341 Acer truncatum HOM05D004794 ORTHO05D005875 2.8e-130 469.2 316 78.5
vmacro01423 Vaccinium macrocarpon HOM05D004794 ORTHO05D005875 2.8e-130 469.2 333 76.6
Potri.010G117200 Populus trichocarpa HOM05D004794 ORTHO05D005875 6.3e-130 468.0 337 74.5
TAR374G0638 Trochodendron aralioides HOM05D004794 ORTHO05D005875 8.2e-130 467.6 311 78.1
Atru.chr11.334 Acer truncatum HOM05D004794 ORTHO05D005875 1.1e-129 467.2 301 80.7
TWI75G0950 Tripterygium wilfordii HOM05D004794 ORTHO05D005875 1.4e-129 466.8 342 73.7
Ah.03g138420 Amaranthus hybridus HOM05D004794 ORTHO05D005875 3.1e-129 465.7 318 77.7
Peaxi162Scf00205g01022 Petunia axillaris HOM05D004794 ORTHO05D005875 5.3e-129 464.9 330 76.7
Sopen05g004370 Solanum pennellii HOM05D004794 ORTHO05D005875 9.1e-129 464.2 331 74.3
THA.LOC104805049 Tarenaya hassleriana HOM05D004794 ORTHO05D005875 9.1e-129 464.2 327 77.4
RcHm_v2.0_Chr4g0434021 Rosa chinensis HOM05D004794 ORTHO05D005875 1.2e-128 463.8 317 76.3
Sc04g0005890 Simmondsia chinensis HOM05D004794 ORTHO05D005875 1.2e-128 463.8 311 79.1
Solyc05g008530.3 Solanum lycopersicum HOM05D004794 ORTHO05D005875 1.5e-128 463.4 331 74.0
ATR0691G049 Amborella trichopoda HOM05D004794 ORTHO05D005875 3.5e-128 462.2 317 77.0
CDE06G2233 Ceratophyllum demersum HOM05D004794 ORTHO05D005875 3.5e-128 462.2 310 78.7
Sed0004857 Sechium edule HOM05D004794 ORTHO05D005875 3.5e-128 462.2 311 77.8
Aa31sc79G60 Aethionema arabicum HOM05D004794 ORTHO05D005875 5.9e-128 461.5 301 79.7
ClCG05G022340 Citrullus lanatus HOM05D004794 ORTHO05D005875 5.9e-128 461.5 313 78.3
PGSC0003DMG400030563 Solanum tuberosum HOM05D004794 ORTHO05D005875 5.9e-128 461.5 331 74.0
CAN.G1489.14 Capsicum annuum HOM05D004794 ORTHO05D005875 7.7e-128 461.1 332 72.6
AUR62002773 Chenopodium quinoa HOM05D004794 ORTHO05D005875 7.7e-128 461.1 317 78.5
FAN22G0499 Fragaria x ananassa HOM05D004794 ORTHO05D005875 7.7e-128 461.1 317 77.3
Nitab4.5_0000350g0140 Nicotiana tabacum HOM05D004794 ORTHO05D005875 7.7e-128 461.1 332 74.4
Hund25018 Selenicereus undatus HOM05D004794 ORTHO05D005875 7.7e-128 461.1 333 75.7
MELO3C012288.2 Cucumis melo HOM05D004794 ORTHO05D005875 1.0e-127 460.7 311 78.1
TAR622G1294 Trochodendron aralioides HOM05D004794 ORTHO05D005875 1.0e-127 460.7 312 77.2
FAN17G0450 Fragaria x ananassa HOM05D004794 ORTHO05D005875 1.3e-127 460.3 317 77.0
CsaV3_5G034760 Cucumis sativus L. HOM05D004794 ORTHO05D005875 1.7e-127 459.9 312 78.2
FvH4_4g26390 Fragaria vesca HOM05D004794 ORTHO05D005875 2.2e-127 459.5 317 76.7
FAN12G0017 Fragaria x ananassa HOM05D004794 ORTHO05D005875 2.2e-127 459.5 317 76.7
FAN12G0914 Fragaria x ananassa HOM05D004794 ORTHO05D005875 2.2e-127 459.5 317 76.7
FAN07G1519 Fragaria x ananassa HOM05D004794 ORTHO05D005875 5.0e-127 458.4 316 76.9
Sabra10G0088400 Salix brachista HOM05D004794 ORTHO05D005875 5.0e-127 458.4 383 66.6
Nitab4.5_0013146g0030 Nicotiana tabacum HOM05D004794 ORTHO05D005875 8.5e-127 457.6 331 73.7
Sabra10G0086800 Salix brachista HOM05D004794 ORTHO05D005875 8.5e-127 457.6 383 66.6
Aqoxy5G03876 Aquilegia oxysepala HOM05D004794 ORTHO05D005875 1.1e-126 457.2 312 77.2
Lj3A877T98 Lonicera japonica HOM05D004794 ORTHO05D005875 1.4e-126 456.8 319 77.4
PSO445G0020 Papaver somniferum HOM05D004794 ORTHO05D005875 1.8e-124 449.9 321 75.4
EL10Ac4g08742 Beta vulgaris HOM05D004794 ORTHO05D005875 2.3e-124 449.5 311 75.6
PSO170G3473 Papaver somniferum HOM05D004794 ORTHO05D005875 3.0e-124 449.1 311 77.5
Oeu029170.1 Olea europaea HOM05D004794 ORTHO05D005875 3.9e-124 448.7 332 71.1
TPR.G4856 Trifolium pratense HOM05D004794 ORTHO05D005875 3.9e-124 448.7 310 77.1
Carub.0005s0009 Capsella rubella HOM05D004794 ORTHO05D005875 5.2e-124 448.4 313 76.7
HanXRQChr15g0477711 Helianthus annuus HOM05D004794 ORTHO05D005875 5.2e-124 448.4 319 74.3
VMungo0720G1627 Vigna mungo HOM05D004794 ORTHO05D005875 6.7e-124 448.0 351 70.7
EL10Ac6g14275 Beta vulgaris HOM05D004794 ORTHO05D005875 8.8e-124 447.6 304 78.0
C02p49070 Brassica napus HOM05D004794 ORTHO05D005875 8.8e-124 447.6 297 78.8
CSS0006530 Camellia sinensis var. sinensis HOM05D004794 ORTHO05D005875 8.8e-124 447.6 331 73.4
HPP92_027135 Vanilla planifolia HOM05D004794 ORTHO05D005875 1.1e-123 447.2 317 74.1
Haze_00684 Corylus avellana HOM05D004794 ORTHO05D005875 1.5e-123 446.8 335 73.4
HPP92_021566 Vanilla planifolia HOM05D004794 ORTHO05D005875 2.0e-123 446.4 317 73.8
BolC2t10997H Brassica oleracea HOM05D004794 ORTHO05D005875 2.6e-123 446.0 297 78.5
CDE07G0253 Ceratophyllum demersum HOM05D004794 ORTHO05D005875 2.6e-123 446.0 258 88.4
MSTRG.13564 Avicennia marina HOM05D004794 ORTHO05D005875 3.3e-123 445.7 348 71.0
BcaC06g31333 Brassica carinata HOM05D004794 ORTHO05D005875 3.3e-123 445.7 288 80.2
BcaC03g16998 Brassica carinata HOM05D004794 ORTHO05D005875 4.4e-123 445.3 319 75.2
Lj6A750T92 Lonicera japonica HOM05D004794 ORTHO05D005875 5.7e-123 444.9 344 71.2
CARHR143660 Cardamine hirsuta HOM05D004794 ORTHO05D005875 1.3e-122 443.7 283 80.9
ECA246G3704 Erigeron canadensis HOM05D004794 ORTHO05D005875 1.3e-122 443.7 298 77.5
BcaB07g30424 Brassica carinata HOM05D004794 ORTHO05D005875 1.7e-122 443.4 319 75.2
SGA_v2.0_scaffold376G50295 Striga asiatica HOM05D004794 ORTHO05D005875 1.7e-122 443.4 318 74.5
Lsat_1_v5_gn_3_54000 Lactuca sativa HOM05D004794 ORTHO05D005875 2.8e-122 442.6 329 71.1
AT2G01110 Arabidopsis thaliana HOM05D004794 ORTHO05D005875 4.8e-122 441.8 291 79.7
BcaC06g34216 Brassica carinata HOM05D004794 ORTHO05D005875 4.8e-122 441.8 297 78.1
Sp2g12580 Schrenkiella parvula HOM05D004794 ORTHO05D005875 4.8e-122 441.8 297 78.1
AL5G10060 Arabidopsis lyrata HOM05D004794 ORTHO05D005875 6.3e-122 441.4 283 80.9
C07p31580 Brassica napus HOM05D004794 ORTHO05D005875 6.3e-122 441.4 297 78.1
HanXRQChr01g0013251 Helianthus annuus HOM05D004794 ORTHO05D005875 6.3e-122 441.4 320 73.8
A06p44670 Brassica napus HOM05D004794 ORTHO05D005875 1.8e-121 439.9 291 78.7
Zm00001eb009240 Zea mays HOM05D004794 ORTHO05D005875 1.8e-121 439.9 317 73.2
BraA06t27340Z Brassica rapa HOM05D004794 ORTHO05D005875 2.4e-121 439.5 291 78.7
BolC7t43697H Brassica oleracea HOM05D004794 ORTHO05D005875 4.1e-121 438.7 297 77.8
MBI16_g29821_MAGBIO Magnolia biondii HOM05D004794 ORTHO05D005875 4.1e-121 438.7 288 80.2
A02p31690 Brassica napus HOM05D004794 ORTHO05D005875 9.1e-121 437.6 297 77.8
BraA02t08175Z Brassica rapa HOM05D004794 ORTHO05D005875 9.1e-121 437.6 297 77.8
DCAR_007276 Daucus carota HOM05D004794 ORTHO05D005875 1.6e-120 436.8 255 87.1
Cc11_g09270 Coffea canephora HOM05D004794 ORTHO05D005875 2.0e-120 436.4 334 71.3
Os01g0501700 Oryza sativa ssp. japonica HOM05D004794 ORTHO05D005875 2.0e-120 436.4 331 71.6
Oeu048392.1 Olea europaea HOM05D004794 ORTHO05D005875 3.5e-120 435.6 357 67.8
Duzib251G0273 Durio zibethinus HOM05D004794 ORTHO05D005875 7.7e-120 434.5 313 74.4
Migut.E00392 Erythranthe guttata HOM05D004794 ORTHO05D005875 3.8e-119 432.2 329 69.3
COL.COLO4_20120 Corchorus olitorius HOM05D004794 ORTHO05D005875 1.9e-118 429.9 246 89.4
Duzib268G0539 Durio zibethinus HOM05D004794 ORTHO05D005875 3.2e-118 429.1 335 71.6
SalBow8G5373 Salvia bowleyana HOM05D004794 ORTHO05D005875 4.2e-118 428.7 328 69.5
AUR62037257 Chenopodium quinoa HOM05D004794 ORTHO05D005875 6.8e-116 421.4 407 60.4
HPP92_020138 Vanilla planifolia HOM05D004794 ORTHO05D005875 1.2e-115 420.6 333 69.4
Migut.L01019 Erythranthe guttata HOM05D004794 ORTHO05D005875 4.4e-115 418.7 305 73.1
Lsat_1_v5_gn_4_15760 Lactuca sativa HOM05D004794 ORTHO05D005875 5.7e-115 418.3 324 71.3
SEGI_17562 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 2.8e-114 416.0 287 76.0
Rhsim12G0088300 Rhododendron simsii HOM05D004794 ORTHO05D005875 1.6e-112 410.2 323 69.3
HanXRQChr17g0567091 Helianthus annuus HOM05D004794 ORTHO05D005875 7.7e-112 407.9 313 70.6
SalBow8G4147 Salvia bowleyana HOM05D004794 ORTHO05D005875 2.9e-111 406.0 353 63.7
ECA234G2688 Erigeron canadensis HOM05D004794 ORTHO05D005875 1.2e-109 400.6 300 70.7
DCAR_030186 Daucus carota HOM05D004794 ORTHO05D005875 8.0e-109 397.9 225 89.8
Mapoly0010s0061 Marchantia polymorpha HOM05D004794 ORTHO05D005875 4.4e-107 392.1 324 65.1
Thhalv10000946m.g Eutrema salsugineum HOM05D004794 ORTHO05D005875 9.8e-107 391.0 283 74.6
SMO119G0095 Selaginella moellendorffii HOM05D004794 ORTHO05D005875 8.3e-106 387.9 244 79.5
Pp3c3_36440 Physcomitrium patens HOM05D004794 ORTHO05D005875 5.4e-105 385.2 276 70.7
CBR_g19219 Chara braunii HOM05D004794 ORTHO05D005875 1.2e-104 384.0 246 78.0
Pp3c8_3800 Physcomitrium patens HOM05D004794 ORTHO05D005875 3.5e-104 382.5 311 66.9
AagrBONN_evm.TU.Sc2ySwM_368.2774 Anthoceros agrestis HOM05D004794 ORTHO05D005875 1.3e-103 380.6 276 71.0
PRCOL_00000588 Prasinoderma coloniale HOM05D004794 ORTHO05D005875 3.2e-97 359.4 250 70.0
Zm00001eb399680 Zea mays HOM05D004794 ORTHO05D005875 1.5e-94 350.5 317 62.5
Cre03.g145887 Chlamydomonas reinhardtii HOM05D004794 ORTHO05D005875 2.2e-90 336.7 250 68.4
Oeu022847.1 Olea europaea HOM05D004794 ORTHO05D005875 3.7e-90 335.9 231 76.2
MCO02G003 Micromonas commoda HOM05D004794 ORTHO05D005875 1.4e-89 334.0 242 70.7
unitig_8.g3987 Utricularia gibba HOM05D000722 ORTHO05D000590 2.4e-65 253.4 205 65.9
A09p23220 Brassica napus HOM05D004794 ORTHO05D005875 1.4e-60 237.7 148 81.8
BraA09t37925Z Brassica rapa HOM05D004794 ORTHO05D005875 6.9e-60 235.3 148 81.1
BcaC03g16992 Brassica carinata HOM05D004794 ORTHO05D005875 2.7e-56 223.4 169 69.2
BolC2t10985H Brassica oleracea HOM05D004794 ORTHO05D005875 2.7e-56 223.4 169 69.2
Cpa.g.sc65.92 Carica papaya HOM05D004794 ORTHO05D005875 7.9e-48 195.3 108 93.5
SEGI_30482 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 4.8e-37 159.5 102 81.4
SEGI_31512 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 8.2e-37 158.7 99 82.8
C09p29960 Brassica napus HOM05D004794 ORTHO05D039171 5.5e-33 146.0 115 67.8
SEGI_19547 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 3.5e-32 143.3 125 63.2
BcaC04g21603 Brassica carinata HOM05D004794 ORTHO05D039171 1.1e-25 121.7 102 67.6
unitig_8.g3988 Utricularia gibba HOM05D004794 ORTHO05D005875 1.4e-20 104.8 61 86.9
BolC9t55859H Brassica oleracea HOM05D004794 ORTHO05D005875 6.9e-20 102.4 64 82.8


User provided reference genes

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