Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G264300 Glycine max HOM05D004301 ORTHO05D005124 4.3e-69 264.6 140 100.0
Phvul.007G037700 Phaseolus vulgaris HOM05D004301 ORTHO05D005124 8.3e-65 250.4 140 93.6
arahy.Tifrunner.gnm1.ann1.210EWG Arachis hypogaea HOM05D004301 ORTHO05D005124 2.5e-61 238.8 137 89.8
arahy.Tifrunner.gnm1.ann1.6J361A Arachis hypogaea HOM05D004301 ORTHO05D005124 7.3e-61 237.3 137 89.1
Lj2g0004276 Lotus japonicus HOM05D004301 ORTHO05D005124 3.6e-60 235.0 137 89.8
Lj5g0024394 Lotus japonicus HOM05D004301 ORTHO05D005124 3.6e-60 235.0 137 89.8
VMungo0720G3170 Vigna mungo HOM05D004301 ORTHO05D005124 3.6e-60 235.0 175 74.9
arahy.Tifrunner.gnm1.ann1.0XE69C Arachis hypogaea HOM05D004301 ORTHO05D005124 4.7e-60 234.6 137 88.3
Ca_26119_v3 Cicer arietinum L. HOM05D004301 ORTHO05D005124 8.1e-60 233.8 137 87.6
Medtr7g037020 Medicago truncatula HOM05D004301 ORTHO05D005124 8.1e-60 233.8 137 87.6
TPR.G23756 Trifolium pratense HOM05D004301 ORTHO05D005124 1.8e-59 232.6 137 86.9
Psat3g175280 Pisum sativum HOM05D004301 ORTHO05D005124 2.6e-58 228.8 141 87.2
Duzib235G0809 Durio zibethinus HOM05D004301 ORTHO05D005124 2.1e-55 219.2 137 84.7
Lalb_Chr17g0338691 Lupinus albus HOM05D004301 ORTHO05D005124 3.5e-55 218.4 137 82.5
Gohir.A06G147900 Gossypium hirsutum HOM05D004301 ORTHO05D005124 1.0e-54 216.9 137 83.2
Cpa.g.sc198.42 Carica papaya HOM05D004301 ORTHO05D005124 1.3e-54 216.5 137 82.5
Gohir.D06G153800 Gossypium hirsutum HOM05D004301 ORTHO05D005124 1.3e-54 216.5 137 83.2
Gorai.010G179800 Gossypium raimondii HOM05D004301 ORTHO05D005124 1.3e-54 216.5 137 83.2
Ciclev10017125m.g Citrus clementina HOM05D004301 ORTHO05D005124 1.7e-54 216.1 137 81.0
Thecc.06G088100 Theobroma cacao HOM05D004301 ORTHO05D005124 1.7e-54 216.1 137 83.2
Lj1A1229G41 Lonicera japonica HOM05D004301 ORTHO05D005124 3.0e-54 215.3 139 83.5
Manes.03G210700 Manihot esculenta HOM05D004301 ORTHO05D005124 3.0e-54 215.3 137 84.7
Dinv18010 Davidia involucrata HOM05D004301 ORTHO05D005124 1.5e-53 213.0 137 81.8
Atru.chr10.2203 Acer truncatum HOM05D004301 ORTHO05D005124 2.5e-53 212.2 139 82.0
CSS0003131 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 4.3e-53 211.5 137 81.0
Prupe.4G022700 Prunus persica HOM05D004301 ORTHO05D005124 4.3e-53 211.5 137 80.3
vmacro03693 Vaccinium macrocarpon HOM05D004301 ORTHO05D005124 4.3e-53 211.5 138 83.3
COL.COLO4_28865 Corchorus olitorius HOM05D004301 ORTHO05D005124 5.6e-53 211.1 137 81.0
Nitab4.5_0007007g0030 Nicotiana tabacum HOM05D004301 ORTHO05D005124 7.3e-53 210.7 138 81.9
Nitab4.5_0007482g0040 Nicotiana tabacum HOM05D004301 ORTHO05D005124 7.3e-53 210.7 138 81.9
PGSC0003DMG400016459 Solanum tuberosum HOM05D004301 ORTHO05D005124 7.3e-53 210.7 138 81.9
CSS0040354 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 1.2e-52 209.9 137 80.3
Cc00_g00410 Coffea canephora HOM05D004301 ORTHO05D005124 1.2e-52 209.9 140 80.7
Peaxi162Scf00595g00039 Petunia axillaris HOM05D004301 ORTHO05D005124 1.6e-52 209.5 139 81.3
Sopen02g025120 Solanum pennellii HOM05D004301 ORTHO05D005124 2.1e-52 209.1 138 81.2
TAR626G0955 Trochodendron aralioides HOM05D004301 ORTHO05D005124 2.1e-52 209.1 137 79.6
CSS0019231 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 2.8e-52 208.8 137 80.3
Manes.09G000400 Manihot esculenta HOM05D004301 ORTHO05D005124 3.6e-52 208.4 137 80.3
Hund21400 Selenicereus undatus HOM05D004301 ORTHO05D005124 4.7e-52 208.0 137 81.0
SalBow8G0640 Salvia bowleyana HOM05D004301 ORTHO05D005124 8.1e-52 207.2 138 80.4
Haze_06785 Corylus avellana HOM05D004301 ORTHO05D005124 1.1e-51 206.8 138 80.4
Rhsim13G0155100 Rhododendron simsii HOM05D004301 ORTHO05D005124 1.1e-51 206.8 138 81.2
Solyc02g080430.3 Solanum lycopersicum HOM05D004301 ORTHO05D005124 1.1e-51 206.8 138 80.4
Cfa000237 Carpinus fangiana HOM05D004301 ORTHO05D005124 1.8e-51 206.1 138 80.4
Cc03_g13960 Coffea canephora HOM05D004301 ORTHO05D005124 1.8e-51 206.1 140 79.3
MSTRG.7223 Avicennia marina HOM05D004301 ORTHO05D005124 2.3e-51 205.7 139 79.9
RcHm_v2.0_Chr5g0030661 Rosa chinensis HOM05D004301 ORTHO05D005124 2.3e-51 205.7 137 77.4
SGA_v2.0_scaffold4G01921 Striga asiatica HOM05D004301 ORTHO05D005124 3.1e-51 205.3 142 77.5
TAR629G3276 Trochodendron aralioides HOM05D004301 ORTHO05D005124 3.1e-51 205.3 137 77.4
THA.LOC104806300 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 5.2e-51 204.5 139 79.9
Migut.M01306 Erythranthe guttata HOM05D004301 ORTHO05D005124 6.8e-51 204.1 139 78.4
Sabra04G0009400 Salix brachista HOM05D004301 ORTHO05D005124 8.9e-51 203.8 137 79.6
FvH4_3g18180 Fragaria vesca HOM05D004301 ORTHO05D005124 1.2e-50 203.4 137 77.4
FAN16G3380 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.2e-50 203.4 137 77.4
Oeu033197.1 Olea europaea HOM05D004301 ORTHO05D005124 1.2e-50 203.4 139 78.4
PGR004G0513 Punica granatum HOM05D004301 ORTHO05D005124 1.2e-50 203.4 141 78.7
ATR0752G175 Amborella trichopoda HOM05D004301 ORTHO05D005124 2.0e-50 202.6 137 75.9
CAN.G1175.8 Capsicum annuum HOM05D004301 ORTHO05D005124 2.0e-50 202.6 138 79.0
Potri.004G017100 Populus trichocarpa HOM05D004301 ORTHO05D005124 2.0e-50 202.6 137 78.8
Rhsim08G0082200 Rhododendron simsii HOM05D004301 ORTHO05D005124 2.0e-50 202.6 138 79.7
CiPaw.09G090400 Carya illinoinensis HOM05D004301 ORTHO05D005124 3.4e-50 201.8 140 77.9
CsaV3_4G017560 Cucumis sativus L. HOM05D004301 ORTHO05D005124 3.4e-50 201.8 138 79.0
TWI63G1781 Tripterygium wilfordii HOM05D004301 ORTHO05D005124 3.4e-50 201.8 138 79.0
HPP92_021475 Vanilla planifolia HOM05D004301 ORTHO05D005124 3.4e-50 201.8 137 78.8
MELO3C014729.2 Cucumis melo HOM05D004301 ORTHO05D005124 9.9e-50 200.3 138 78.3
Sp6g04160 Schrenkiella parvula HOM05D004301 ORTHO05D005124 9.9e-50 200.3 139 77.7
CARHR252750 Cardamine hirsuta HOM05D004301 ORTHO05D005124 1.7e-49 199.5 140 77.9
RcHm_v2.0_Chr5g0030681 Rosa chinensis HOM05D004301 ORTHO05D005124 1.7e-49 199.5 137 75.2
Sc05g0009100 Simmondsia chinensis HOM05D004301 ORTHO05D005124 1.7e-49 199.5 139 77.0
Carub.0006s3270 Capsella rubella HOM05D004301 ORTHO05D005124 2.2e-49 199.1 139 77.7
THA.LOC104813057 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 2.9e-49 198.7 139 77.0
FAN25G1723 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.9e-48 196.1 137 73.7
CANSAT56G0804 Cannabis sativa HOM05D004301 ORTHO05D005124 2.4e-48 195.7 140 75.0
arahy.Tifrunner.gnm1.ann1.RW8N71 Arachis hypogaea HOM05D004301 ORTHO05D005124 4.1e-48 194.9 114 88.6
ECA248G0561 Erigeron canadensis HOM05D004301 ORTHO05D005124 4.1e-48 194.9 146 72.6
PSO339G4464 Papaver somniferum HOM05D004301 ORTHO05D005124 4.1e-48 194.9 138 76.1
PSO384G5030 Papaver somniferum HOM05D004301 ORTHO05D005124 4.1e-48 194.9 138 76.1
QL05p073536 Quercus lobata HOM05D004301 ORTHO05D005124 4.1e-48 194.9 143 75.5
AT4G04780 Arabidopsis thaliana HOM05D004301 ORTHO05D005124 5.4e-48 194.5 139 75.5
AL6G48270 Arabidopsis lyrata HOM05D004301 ORTHO05D005124 7.1e-48 194.1 139 74.8
Oeu037360.1 Olea europaea HOM05D004301 ORTHO05D005124 7.1e-48 194.1 140 75.0
QL05p073775 Quercus lobata HOM05D004301 ORTHO05D005124 9.2e-48 193.7 143 74.8
Lsat_1_v5_gn_1_128621 Lactuca sativa HOM05D004301 ORTHO05D005124 2.7e-47 192.2 163 67.5
Aqoxy3G02575 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 1.0e-46 190.3 147 72.1
HanXRQChr10g0285201 Helianthus annuus HOM05D004301 ORTHO05D005124 1.7e-46 189.5 159 66.7
A09p26100 Brassica napus HOM05D004301 ORTHO05D005124 3.0e-46 188.7 150 71.3
BraA09t38177Z Brassica rapa HOM05D004301 ORTHO05D005124 3.0e-46 188.7 150 71.3
DCAR_008141 Daucus carota HOM05D004301 ORTHO05D005124 5.1e-46 188.0 139 74.1
CDE05G1190 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 1.1e-45 186.8 137 74.5
FAN12G2174 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.1e-45 186.8 143 69.9
MBI16_g31789_MAGBIO Magnolia biondii HOM05D004301 ORTHO05D005124 1.1e-45 186.8 151 68.2
BcaB01g01837 Brassica carinata HOM05D004301 ORTHO05D005124 1.5e-45 186.4 148 71.6
unitig_748.g7577 Utricularia gibba HOM05D004301 ORTHO05D005124 1.9e-45 186.0 139 71.9
Aa31LG9G9690 Aethionema arabicum HOM05D004301 ORTHO05D005124 3.3e-45 185.3 139 72.7
FAN07G2330 Fragaria x ananassa HOM05D004301 ORTHO05D005124 9.6e-45 183.7 143 67.8
RcHm_v2.0_Chr4g0426811 Rosa chinensis HOM05D004301 ORTHO05D005124 9.6e-45 183.7 145 68.3
FvH4_4g21200 Fragaria vesca HOM05D004301 ORTHO05D005124 1.2e-44 183.3 147 68.0
CDE04G1315 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 3.6e-44 181.8 137 72.3
BolC9t56147H Brassica oleracea HOM05D004301 ORTHO05D005124 4.7e-44 181.4 151 68.2
Cc00_g35050 Coffea canephora HOM05D004301 ORTHO05D005124 8.1e-44 180.6 140 72.1
Ah.09g234990 Amaranthus hybridus HOM05D004301 ORTHO05D005124 1.1e-43 180.3 176 59.7
BcaC04g21325 Brassica carinata HOM05D004301 ORTHO05D005124 1.1e-43 180.3 154 66.9
C09p33120 Brassica napus HOM05D004301 ORTHO05D005124 1.1e-43 180.3 154 66.9
PSO170G5652 Papaver somniferum HOM05D004301 ORTHO05D005124 3.1e-43 178.7 138 70.3
Nn7g37600 Nelumbo nucifera HOM05D004301 ORTHO05D005124 3.4e-42 175.3 112 83.0
MD10G1319700 Malus domestica HOM05D004301 ORTHO05D005124 5.8e-42 174.5 137 67.2
SEGI_29072 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 7.6e-42 174.1 136 66.2
EL10Ac8g20032 Beta vulgaris HOM05D004301 ORTHO05D005124 9.9e-42 173.7 168 59.5
AUR62012686 Chenopodium quinoa HOM05D004301 ORTHO05D005124 2.2e-41 172.6 136 71.3
C02p40060 Brassica napus HOM05D004301 ORTHO05D005124 6.4e-41 171.0 134 70.9
ClCG02G024420 Citrullus lanatus HOM05D005410 ORTHO05D007394 1.1e-40 170.2 113 80.5
Mapoly0013s0130 Marchantia polymorpha HOM05D004301 ORTHO05D005124 1.2e-39 166.8 136 61.8
BraA02t07511Z Brassica rapa HOM05D004301 ORTHO05D005124 1.7e-38 162.9 134 69.4
SEGI_24906 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 1.7e-38 162.9 166 54.2
AagrBONN_evm.TU.Sc2ySwM_362.2472 Anthoceros agrestis HOM05D004301 ORTHO05D005124 5.6e-37 157.9 137 62.8
PSO017G1667 Papaver somniferum HOM05D004301 ORTHO05D005124 2.8e-36 155.6 113 74.3
FAN20G0317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 6.2e-36 154.5 115 72.2
unitig_32.g11531 Utricularia gibba HOM05D004301 ORTHO05D005124 1.8e-35 152.9 119 70.6
Pp3c1_16690 Physcomitrium patens HOM05D004301 ORTHO05D005124 1.2e-34 150.2 136 58.8
Duzib192G0451 Durio zibethinus HOM05D004301 ORTHO05D005124 2.0e-34 149.4 112 73.2
PSO478G1674 Papaver somniferum HOM05D004301 ORTHO05D005124 2.6e-34 149.1 128 69.5
Zm00001eb173130 Zea mays HOM05D004301 ORTHO05D005124 2.4e-32 142.5 166 51.8
Prupe.1G108500 Prunus persica HOM05D004301 ORTHO05D005124 2.1e-31 139.4 131 60.3
A02p25250 Brassica napus HOM05D004301 ORTHO05D005124 2.7e-31 139.0 134 60.4
Psat5g160160 Pisum sativum HOM05D004301 ORTHO05D005124 1.3e-30 136.7 85 84.7
BolC2t10033H Brassica oleracea HOM05D004301 ORTHO05D005124 2.3e-30 136.0 134 61.2
SMO200G0228 Selaginella moellendorffii HOM05D004301 ORTHO05D005124 3.9e-30 135.2 155 54.8
Oeu033198.1 Olea europaea HOM05D004301 ORTHO05D005124 1.1e-29 133.7 97 74.2
Psat5g160080 Pisum sativum HOM05D004301 ORTHO05D005124 1.9e-29 132.9 85 82.4
Actinidia26923 Actinidia chinensis HOM05D004301 ORTHO05D005124 5.6e-29 131.3 110 66.4
BcaC03g16234 Brassica carinata HOM05D004301 ORTHO05D005124 8.1e-28 127.5 108 66.7
CBR_g6572 Chara braunii HOM05D004301 ORTHO05D005124 1.8e-27 126.3 135 54.1
CDE05G0994 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 1.2e-26 123.6 116 61.2
Gorai.005G123500 Gossypium raimondii HOM05D004301 ORTHO05D005124 2.0e-26 122.9 80 82.5
Nitab4.5_0003254g0080 Nicotiana tabacum HOM05D004301 ORTHO05D005124 2.2e-25 119.4 79 79.7
Gohir.D09G045050 Gossypium hirsutum HOM05D004301 ORTHO05D005124 3.8e-25 118.6 79 79.7
Gohir.D02G172033 Gossypium hirsutum HOM05D004301 ORTHO05D005124 1.1e-24 117.1 79 79.7
Gohir.D10G075550 Gossypium hirsutum HOM05D004301 ORTHO05D005124 5.5e-24 114.8 76 82.9
Gorai.006G117000 Gossypium raimondii HOM05D004301 ORTHO05D005124 5.5e-24 114.8 77 80.5
Medtr1g107580 Medicago truncatula HOM05D004301 ORTHO05D005124 2.1e-23 112.8 70 81.4
BcaC03g16233 Brassica carinata HOM05D004301 ORTHO05D005124 2.7e-23 112.5 114 58.8
CAN.G138.7 Capsicum annuum HOM05D004301 ORTHO05D005124 3.5e-23 112.1 131 54.2
BcaB05g23708 Brassica carinata HOM05D004301 ORTHO05D005124 6.0e-23 111.3 137 50.4
AUR62021971 Chenopodium quinoa HOM05D004301 ORTHO05D005124 6.7e-22 107.8 69 81.2
Eucgr.G02030 Eucalyptus grandis HOM05D004301 ORTHO05D005124 5.6e-21 104.8 68 79.4
FAN21G3317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.1e-19 100.5 69 72.5
Gorai.001G171600 Gossypium raimondii HOM05D001075 ORTHO05D001779 1.7e-17 93.2 99 55.6
Nitab4.5_0003254g0090 Nicotiana tabacum HOM05D004301 ORTHO05D005124 4.2e-16 88.6 58 79.3
Os08g0135600 Oryza sativa ssp. japonica HOM05D004301 ORTHO05D005124 4.2e-16 88.6 68 69.1
RcHm_v2.0_Chr4g0426791 Rosa chinensis HOM05D004301 ORTHO05D005124 6.7e-14 81.3 77 57.1
Aqoxy3G02572 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 2.5e-13 79.3 54 75.9
MCO03G202 Micromonas commoda HOM05D004301 ORTHO05D005124 4.3e-13 78.6 136 39.0
A05p31460 Brassica napus HOM05D004301 ORTHO05D005124 2.0e-10 69.7 72 55.6
BraA05t21985Z Brassica rapa HOM05D004301 ORTHO05D005124 2.0e-10 69.7 72 55.6
SGA_v2.0_scaffold14G06848 Striga asiatica HOM05D004301 ORTHO05D005124 1.7e-09 66.6 58 62.1
C05p45820 Brassica napus HOM05D004301 ORTHO05D005124 1.3e-06 57.0 44 61.4
C05p45830 Brassica napus HOM05D004301 ORTHO05D005124 1.3e-06 57.0 42 64.3
BolC5t33302H Brassica oleracea HOM05D004301 ORTHO05D005124 2.3e-06 56.2 44 61.4


User provided reference genes

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