Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G263000 Glycine max HOM05D000049 ORTHO05D008785 1.3e-73 279.6 143 100.0
Phvul.007G038900 Phaseolus vulgaris HOM05D000049 ORTHO05D008785 4.2e-64 248.1 143 88.1
Glyma.20G127500 Glycine max HOM05D000049 ORTHO05D008785 2.1e-63 245.7 143 89.5
VMungo0720G1000 Vigna mungo HOM05D000049 ORTHO05D008785 3.3e-61 238.4 143 86.7
Glyma.20G129600 Glycine max HOM05D000049 ORTHO05D008785 3.1e-59 231.9 143 82.5
Lj5g0006015 Lotus japonicus HOM05D000049 ORTHO05D008785 2.2e-52 209.1 144 78.5
Lalb_Chr02g0145351 Lupinus albus HOM05D000049 ORTHO05D008785 1.8e-51 206.1 143 72.7
Psat6g219680 Pisum sativum HOM05D000049 ORTHO05D008785 6.5e-49 197.6 146 72.6
TPR.G13867 Trifolium pratense HOM05D000049 ORTHO05D008785 8.8e-46 187.2 145 69.7
Duzib132G0396 Durio zibethinus HOM05D000049 ORTHO05D008785 1.8e-43 179.5 142 68.3
Medtr1g107490 Medicago truncatula HOM05D000049 ORTHO05D008785 3.1e-43 178.7 130 72.3
Thecc.02G106900 Theobroma cacao HOM05D000049 ORTHO05D008785 7.0e-43 177.6 144 68.1
Duzib248G1051 Durio zibethinus HOM05D000049 ORTHO05D008785 1.2e-42 176.8 144 67.4
Atru.chr5.2581 Acer truncatum HOM05D000049 ORTHO05D008785 5.9e-42 174.5 144 67.4
QL11p033983 Quercus lobata HOM05D000049 ORTHO05D008785 7.7e-42 174.1 144 69.4
arahy.Tifrunner.gnm1.ann1.KJA62A Arachis hypogaea HOM05D000049 ORTHO05D008785 2.3e-41 172.6 161 63.4
Prupe.8G134100 Prunus persica HOM05D000049 ORTHO05D008785 2.1e-39 166.0 144 66.0
Atru.chr11.1081 Acer truncatum HOM05D000049 ORTHO05D008785 3.6e-39 165.2 142 64.8
GSVIVG01003167001 Vitis vinifera HOM05D000049 ORTHO05D008785 4.7e-39 164.9 155 65.2
Cfa004569 Carpinus fangiana HOM05D000049 ORTHO05D008785 1.0e-38 163.7 147 67.3
Cpa.g.sc106.84 Carica papaya HOM05D000049 ORTHO05D008785 1.4e-38 163.3 146 65.8
MD05G1088100 Malus domestica HOM05D000049 ORTHO05D008785 1.4e-38 163.3 144 64.6
Manes.02G137400 Manihot esculenta HOM05D000049 ORTHO05D008785 1.8e-38 162.9 144 65.3
Hund06332 Selenicereus undatus HOM05D000049 ORTHO05D008785 2.3e-38 162.5 144 62.5
Ciclev10029534m.g Citrus clementina HOM05D000049 ORTHO05D008785 3.0e-38 162.2 143 65.0
Haze_10161 Corylus avellana HOM05D000049 ORTHO05D008785 3.0e-38 162.2 147 67.3
CANSAT25G0973 Cannabis sativa HOM05D000049 ORTHO05D008785 6.8e-38 161.0 145 66.2
Hma1.2p1_0796F.1_g219130 Hydrangea macrophylla HOM05D000049 ORTHO05D008785 1.5e-37 159.8 140 67.1
CsaV3_7G008250 Cucumis sativus L. HOM05D000049 ORTHO05D008785 2.0e-37 159.5 145 64.8
Sc08g0001450 Simmondsia chinensis HOM05D000049 ORTHO05D008785 2.6e-37 159.1 144 62.5
CiPaw.06G170000 Carya illinoinensis HOM05D000049 ORTHO05D008785 4.4e-37 158.3 150 64.7
Ah.01g018130 Amaranthus hybridus HOM05D000049 ORTHO05D008785 5.7e-37 157.9 145 66.2
Gohir.D02G207500 Gossypium hirsutum HOM05D000049 ORTHO05D008785 7.5e-37 157.5 150 63.3
Gohir.A03G186700 Gossypium hirsutum HOM05D000049 ORTHO05D008785 1.3e-36 156.8 149 63.1
Sed0018040 Sechium edule HOM05D000049 ORTHO05D008785 1.3e-36 156.8 147 62.6
ClCG02G006290 Citrullus lanatus HOM05D000049 ORTHO05D008785 1.7e-36 156.4 146 65.8
EL10Ac9g22295 Beta vulgaris HOM05D000049 ORTHO05D008785 2.2e-36 156.0 137 61.3
Eucgr.H03224 Eucalyptus grandis HOM05D000049 ORTHO05D008785 2.2e-36 156.0 147 63.3
FvH4_2g05321 Fragaria vesca HOM05D000049 ORTHO05D008785 2.8e-36 155.6 143 63.6
CANSAT25G0620 Cannabis sativa HOM05D000049 ORTHO05D008785 3.7e-36 155.2 143 64.3
AUR62039109 Chenopodium quinoa HOM05D000049 ORTHO05D008785 3.7e-36 155.2 144 61.1
Gorai.005G235400 Gossypium raimondii HOM05D000049 ORTHO05D008785 3.7e-36 155.2 150 62.7
Aqoxy5G01153 Aquilegia oxysepala HOM05D000049 ORTHO05D008785 4.9e-36 154.8 103 79.6
RcHm_v2.0_Chr6g0255531 Rosa chinensis HOM05D000049 ORTHO05D008785 6.3e-36 154.5 143 63.6
Potri.001G301100 Populus trichocarpa HOM05D000049 ORTHO05D008785 8.3e-36 154.1 144 60.4
FAN20G0640 Fragaria x ananassa HOM05D000049 ORTHO05D008785 2.4e-35 152.5 143 62.9
TWI31G0015 Tripterygium wilfordii HOM05D000049 ORTHO05D008785 2.4e-35 152.5 144 63.2
Nn1g04714 Nelumbo nucifera HOM05D000049 ORTHO05D008785 3.1e-35 152.1 135 64.4
Potri.009G096800 Populus trichocarpa HOM05D000049 ORTHO05D008785 3.1e-35 152.1 144 59.0
CiPaw.05G010600 Carya illinoinensis HOM05D000049 ORTHO05D008785 5.4e-35 151.4 103 77.7
Cc02_g19180 Coffea canephora HOM05D000049 ORTHO05D008785 7.0e-35 151.0 144 59.7
Oeu010393.1 Olea europaea HOM05D000049 ORTHO05D008785 7.0e-35 151.0 143 63.6
AUR62010281 Chenopodium quinoa HOM05D000049 ORTHO05D008785 9.2e-35 150.6 144 58.3
SGA_v2.0_scaffold393G50708 Striga asiatica HOM05D000049 ORTHO05D008785 9.2e-35 150.6 144 61.8
Aa31LG2G16660 Aethionema arabicum HOM05D000049 ORTHO05D008785 2.0e-34 149.4 149 59.7
Sabra16G0189300 Salix brachista HOM05D000049 ORTHO05D008785 2.0e-34 149.4 144 59.7
Oeu018599.1 Olea europaea HOM05D000049 ORTHO05D008785 2.7e-34 149.1 95 82.1
Dinv42184 Davidia involucrata HOM05D000049 ORTHO05D008785 4.5e-34 148.3 135 63.7
arahy.Tifrunner.gnm1.ann1.MU25MQ Arachis hypogaea HOM05D000049 ORTHO05D008785 5.9e-34 147.9 97 78.4
A01p04250 Brassica napus HOM05D000049 ORTHO05D008785 5.9e-34 147.9 148 58.8
BraA01t00414Z Brassica rapa HOM05D000049 ORTHO05D008785 5.9e-34 147.9 148 58.8
C01p04640 Brassica napus HOM05D000049 ORTHO05D008785 7.8e-34 147.5 148 58.8
BolC1t00447H Brassica oleracea HOM05D000049 ORTHO05D008785 7.8e-34 147.5 148 58.8
THA.LOC104819560 Tarenaya hassleriana HOM05D000049 ORTHO05D008785 7.8e-34 147.5 150 59.3
CAN.G1231.12 Capsicum annuum HOM05D000049 ORTHO05D008785 1.0e-33 147.1 150 59.3
Migut.N01171 Erythranthe guttata HOM05D000049 ORTHO05D008785 1.0e-33 147.1 130 64.6
Solyc01g107660.3 Solanum lycopersicum HOM05D000049 ORTHO05D008785 1.3e-33 146.7 150 59.3
AL7G17120 Arabidopsis lyrata HOM05D000049 ORTHO05D008785 1.7e-33 146.4 148 60.8
HanXRQChr03g0070281 Helianthus annuus HOM05D000049 ORTHO05D008785 2.9e-33 145.6 138 62.3
PGR042G1228 Punica granatum HOM05D000049 ORTHO05D008785 2.9e-33 145.6 147 59.2
PGSC0003DMG400025866 Solanum tuberosum HOM05D000049 ORTHO05D008785 2.9e-33 145.6 148 62.2
Actinidia27967 Actinidia chinensis HOM05D000049 ORTHO05D008785 3.8e-33 145.2 144 59.7
AT4G34190 Arabidopsis thaliana HOM05D000049 ORTHO05D008785 5.0e-33 144.8 149 59.1
BcaNung03801 Brassica carinata HOM05D000049 ORTHO05D008785 6.6e-33 144.4 148 58.1
Nitab4.5_0002815g0100 Nicotiana tabacum HOM05D000049 ORTHO05D008785 6.6e-33 144.4 145 62.8
CSS0023695 Camellia sinensis var. sinensis HOM05D000049 ORTHO05D008785 8.6e-33 144.1 111 73.0
CARHR242610 Cardamine hirsuta HOM05D000049 ORTHO05D008785 1.1e-32 143.7 153 60.1
Thhalv10026482m.g Eutrema salsugineum HOM05D000049 ORTHO05D008785 1.5e-32 143.3 159 56.6
Carub.0007s0619 Capsella rubella HOM05D000049 ORTHO05D008785 4.3e-32 141.7 151 57.0
ECA240G2980 Erigeron canadensis HOM05D000049 ORTHO05D000027 5.6e-32 141.4 125 60.0
CDE02G2484 Ceratophyllum demersum HOM05D000049 ORTHO05D008785 7.3e-32 141.0 136 58.8
Peaxi162Scf00016g02238 Petunia axillaris HOM05D000049 ORTHO05D008785 7.3e-32 141.0 145 62.8
TAR381G1170 Trochodendron aralioides HOM05D000049 ORTHO05D008785 9.5e-32 140.6 142 56.3
SalBow3G3686 Salvia bowleyana HOM05D000049 ORTHO05D008785 1.2e-31 140.2 103 76.7
Nitab4.5_0005392g0020 Nicotiana tabacum HOM05D000049 ORTHO05D008785 3.6e-31 138.7 145 60.7
Sp7g31960 Schrenkiella parvula HOM05D000049 ORTHO05D008785 3.6e-31 138.7 148 56.1
MSTRG.5347 Avicennia marina HOM05D000049 ORTHO05D008785 2.3e-30 136.0 103 68.0
unitig_22.g6845 Utricularia gibba HOM05D000049 ORTHO05D008785 8.9e-30 134.0 112 67.0
CSS0021501 Camellia sinensis var. sinensis HOM05D000049 ORTHO05D008785 1.2e-29 133.7 131 60.3
THA.LOC104807247 Tarenaya hassleriana HOM05D000049 ORTHO05D008785 2.0e-29 132.9 147 54.4
FAN24G0707 Fragaria x ananassa HOM05D000049 ORTHO05D008785 2.6e-29 132.5 130 59.2
Migut.B00381 Erythranthe guttata HOM05D000049 ORTHO05D008785 3.4e-29 132.1 133 56.4
HPP92_004768 Vanilla planifolia HOM05D000049 ORTHO05D008785 9.8e-29 130.6 103 63.1
CSS0024818 Camellia sinensis var. sinensis HOM05D000049 ORTHO05D008785 1.7e-28 129.8 131 58.8
FAN15G1433 Fragaria x ananassa HOM05D000049 ORTHO05D008785 6.4e-28 127.9 130 56.9
PSO210G6109 Papaver somniferum HOM05D000049 ORTHO05D008785 6.4e-28 127.9 137 54.7
DCAR_030806 Daucus carota HOM05D000049 ORTHO05D008785 4.1e-27 125.2 79 75.9
PSO170G1282 Papaver somniferum HOM05D000049 ORTHO05D008785 6.0e-26 121.3 142 53.5
MELO3C018482.2 Cucumis melo HOM05D000049 ORTHO05D000027 1.9e-24 116.3 91 70.3
SEGI_21574 Sequoiadendron giganteum HOM05D000049 ORTHO05D008785 9.5e-24 114.0 77 70.1
Hund00143 Selenicereus undatus HOM05D000049 ORTHO05D008785 2.0e-21 106.3 71 76.1
Dinv15757 Davidia involucrata HOM05D000049 ORTHO05D008785 4.4e-21 105.1 116 51.7
TAR376G0829 Trochodendron aralioides HOM05D000049 ORTHO05D008785 5.8e-21 104.8 100 61.0
Sabra09G0074400 Salix brachista HOM05D000049 ORTHO05D008785 2.4e-19 99.4 131 45.8
Zm00001eb048670 Zea mays HOM05D000049 ORTHO05D008785 2.1e-18 96.3 78 59.0
vmacro19520 Vaccinium macrocarpon HOM05D000049 ORTHO05D008785 3.5e-18 95.5 69 68.1
Mapoly0006s0145 Marchantia polymorpha HOM05D000049 ORTHO05D008785 1.7e-17 93.2 112 49.1
FAN27G0752 Fragaria x ananassa HOM05D000049 ORTHO05D000027 1.6e-15 86.7 109 50.5
Pp3c1_21810 Physcomitrium patens HOM05D000049 ORTHO05D008785 1.6e-15 86.7 89 49.4
Os11g0621400 Oryza sativa ssp. japonica HOM05D000049 ORTHO05D008785 1.8e-14 83.2 86 47.7
ATR0691G295 Amborella trichopoda HOM05D000049 ORTHO05D008785 6.8e-14 81.3 55 78.2
TAR628G1275 Trochodendron aralioides HOM05D000049 ORTHO05D008785 8.9e-14 80.9 69 62.3
SMO340G0196 Selaginella moellendorffii HOM05D000049 ORTHO05D008785 2.0e-13 79.7 78 51.3
AagrBONN_evm.TU.Sc2ySwM_117.2783 Anthoceros agrestis HOM05D000049 ORTHO05D008785 9.9e-13 77.4 82 47.6
SalBow6G4602 Salvia bowleyana HOM05D010989 ORTHO05D013112 2.9e-12 75.9 84 58.3
COL.COLO4_15744 Corchorus olitorius HOM05D001416 ORTHO05D002549 3.3e-08 62.4 32 93.8
Os10g0395200 Oryza sativa ssp. japonica HOM05D000049 ORTHO05D008785 3.1e-06 55.8 69 46.4


User provided reference genes

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