Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G261800 Glycine max HOM05D004451 ORTHO05D005177 1.1e-148 530.0 285 100.0
Glyma.20G129100 Glycine max HOM05D004451 ORTHO05D005177 2.3e-138 495.7 285 94.0
Phvul.007G040300 Phaseolus vulgaris HOM05D004451 ORTHO05D005177 4.5e-134 481.5 285 91.2
VMungo0720G2723 Vigna mungo HOM05D004451 ORTHO05D005177 2.3e-130 469.2 283 89.8
Lj5g0008999 Lotus japonicus HOM05D004451 ORTHO05D005177 6.5e-117 424.5 291 81.8
arahy.Tifrunner.gnm1.ann1.S5NBXN Arachis hypogaea HOM05D004451 ORTHO05D005177 1.5e-116 423.3 294 81.0
arahy.Tifrunner.gnm1.ann1.BMM90D Arachis hypogaea HOM05D004451 ORTHO05D005177 1.9e-116 422.9 294 81.0
Psat6g219200 Pisum sativum HOM05D004451 ORTHO05D005177 5.5e-116 421.4 285 80.0
Medtr1g107450 Medicago truncatula HOM05D004451 ORTHO05D005177 9.5e-116 420.6 285 80.4
Ca_11078_v3 Cicer arietinum L. HOM05D004451 ORTHO05D005177 5.2e-114 414.8 285 79.3
Lalb_Chr06g0165471 Lupinus albus HOM05D004451 ORTHO05D005177 2.0e-105 386.3 289 75.8
Lalb_Chr02g0145321 Lupinus albus HOM05D004451 ORTHO05D005177 2.6e-105 386.0 293 76.1
Gohir.A13G043700 Gossypium hirsutum HOM05D004451 ORTHO05D005177 7.3e-100 367.9 296 72.3
Gohir.D13G042200 Gossypium hirsutum HOM05D004451 ORTHO05D005177 2.8e-99 365.9 289 73.0
Prupe.8G134600 Prunus persica HOM05D004451 ORTHO05D005177 2.8e-99 365.9 293 71.7
Gorai.013G047100 Gossypium raimondii HOM05D004451 ORTHO05D005177 6.2e-99 364.8 289 73.0
GSVIVG01003161001 Vitis vinifera HOM05D004451 ORTHO05D005177 8.0e-99 364.4 302 69.9
Thecc.02G107400 Theobroma cacao HOM05D004451 ORTHO05D005177 8.9e-98 360.9 294 71.8
ECA234G3549 Erigeron canadensis HOM05D004451 ORTHO05D005177 2.6e-97 359.4 287 70.0
COL.COLO4_32599 Corchorus olitorius HOM05D004451 ORTHO05D005177 9.8e-97 357.5 293 71.3
PGR142G3187 Punica granatum HOM05D004451 ORTHO05D005177 2.9e-96 355.9 306 68.0
Manes.07G069100 Manihot esculenta HOM05D004451 ORTHO05D005177 3.7e-96 355.5 299 67.9
Gorai.005G235200 Gossypium raimondii HOM05D004451 ORTHO05D005177 4.9e-96 355.1 291 71.5
CSS0044080 Camellia sinensis var. sinensis HOM05D004451 ORTHO05D005177 6.4e-96 354.8 294 70.7
Actinidia00412 Actinidia chinensis HOM05D004451 ORTHO05D005177 1.1e-95 354.0 302 69.2
Cpa.g.sc106.89 Carica papaya HOM05D004451 ORTHO05D005177 1.4e-95 353.6 297 70.7
Duzib248G1610 Durio zibethinus HOM05D004451 ORTHO05D005177 1.4e-95 353.6 294 71.1
Cc02_g19230 Coffea canephora HOM05D004451 ORTHO05D005177 1.9e-95 353.2 295 69.8
MD05G1088600 Malus domestica HOM05D004451 ORTHO05D005177 2.4e-95 352.8 297 70.4
Ciclev10029016m.g Citrus clementina HOM05D004451 ORTHO05D005177 3.2e-95 352.4 289 69.9
Duzib132G0413 Durio zibethinus HOM05D004451 ORTHO05D005177 3.2e-95 352.4 291 71.1
MD10G1096700 Malus domestica HOM05D004451 ORTHO05D005177 7.0e-95 351.3 293 70.0
Actinidia17478 Actinidia chinensis HOM05D004451 ORTHO05D005177 9.2e-95 350.9 299 68.6
CANSAT25G0591 Cannabis sativa HOM05D004451 ORTHO05D005177 1.2e-94 350.5 299 69.6
Potri.009G096300 Populus trichocarpa HOM05D004451 ORTHO05D005177 1.2e-94 350.5 295 68.5
Atru.chr5.2587 Acer truncatum HOM05D004451 ORTHO05D005177 1.6e-94 350.1 285 72.3
CANSAT25G2876 Cannabis sativa HOM05D004451 ORTHO05D005177 1.6e-94 350.1 299 69.6
Potri.001G300500 Populus trichocarpa HOM05D004451 ORTHO05D005177 1.6e-94 350.1 300 69.0
Hma1.2p1_0796F.1_g219180 Hydrangea macrophylla HOM05D004451 ORTHO05D005177 2.1e-94 349.7 301 69.1
TAR381G0562 Trochodendron aralioides HOM05D004451 ORTHO05D005177 3.5e-94 349.0 299 67.2
Oeu018597.1 Olea europaea HOM05D004451 ORTHO05D005177 6.0e-94 348.2 292 69.5
CSS0017890 Camellia sinensis var. sinensis HOM05D004451 ORTHO05D005177 7.8e-94 347.8 299 68.9
Manes.10G076300 Manihot esculenta HOM05D004451 ORTHO05D005177 7.8e-94 347.8 296 68.2
RcHm_v2.0_Chr6g0255371 Rosa chinensis HOM05D004451 ORTHO05D005177 7.8e-94 347.8 286 68.2
Gohir.A03G186500 Gossypium hirsutum HOM05D004451 ORTHO05D005177 1.0e-93 347.4 293 71.3
Oeu010397.1 Olea europaea HOM05D004451 ORTHO05D005177 5.0e-93 345.1 291 69.4
ClCG02G006310 Citrullus lanatus HOM05D004451 ORTHO05D005177 1.5e-92 343.6 308 66.2
Nn1g04705 Nelumbo nucifera HOM05D004451 ORTHO05D005177 1.5e-92 343.6 292 67.8
QL11p033916 Quercus lobata HOM05D004451 ORTHO05D005177 2.5e-92 342.8 298 67.8
TWI79G0876 Tripterygium wilfordii HOM05D004451 ORTHO05D005177 3.3e-92 342.4 297 67.7
TAR628G0195 Trochodendron aralioides HOM05D004451 ORTHO05D005177 3.3e-92 342.4 298 67.1
Haze_10166 Corylus avellana HOM05D004451 ORTHO05D005177 7.3e-92 341.3 294 68.4
HanXRQChr16g0514851 Helianthus annuus HOM05D004451 ORTHO05D005177 7.3e-92 341.3 286 68.2
CsaV3_7G008120 Cucumis sativus L. HOM05D004451 ORTHO05D005177 1.2e-91 340.5 294 67.7
Rhsim05G0088400 Rhododendron simsii HOM05D004451 ORTHO05D005177 1.6e-91 340.1 294 68.4
Sed0013348 Sechium edule HOM05D004451 ORTHO05D005177 1.6e-91 340.1 298 66.4
Cfa004574 Carpinus fangiana HOM05D004451 ORTHO05D005177 2.1e-91 339.7 293 67.2
Gohir.D02G207300 Gossypium hirsutum HOM05D004451 ORTHO05D005177 2.8e-91 339.3 294 70.7
TWI31G0226 Tripterygium wilfordii HOM05D004451 ORTHO05D005177 3.6e-91 339.0 297 67.0
FvH4_2g05240 Fragaria vesca HOM05D004451 ORTHO05D005177 6.2e-91 338.2 289 68.2
SGA_v2.0_scaffold32G13039 Striga asiatica HOM05D004451 ORTHO05D005177 8.1e-91 337.8 297 66.3
CSS0019678 Camellia sinensis var. sinensis HOM05D004451 ORTHO05D005177 1.1e-90 337.4 306 66.7
AUR62039084 Chenopodium quinoa HOM05D004451 ORTHO05D005177 1.1e-90 337.4 288 69.4
FAN27G3473 Fragaria x ananassa HOM05D004451 ORTHO05D005177 1.1e-90 337.4 289 67.5
SalBow6G6827 Salvia bowleyana HOM05D004451 ORTHO05D005177 2.3e-90 336.3 291 67.4
Actinidia05493 Actinidia chinensis HOM05D004451 ORTHO05D005177 3.1e-90 335.9 285 67.7
MELO3C018494.2 Cucumis melo HOM05D004451 ORTHO05D005177 4.0e-90 335.5 302 65.6
Nitab4.5_0002815g0090 Nicotiana tabacum HOM05D004451 ORTHO05D005177 5.2e-90 335.1 297 66.7
vmacro19448 Vaccinium macrocarpon HOM05D004451 ORTHO05D005177 5.2e-90 335.1 295 68.5
FAN20G1574 Fragaria x ananassa HOM05D004451 ORTHO05D005177 8.9e-90 334.3 289 67.1
PSO210G2671 Papaver somniferum HOM05D004451 ORTHO05D005177 8.9e-90 334.3 266 69.9
Sed0001090 Sechium edule HOM05D004451 ORTHO05D005177 1.5e-89 333.6 300 66.7
Migut.B00385 Erythranthe guttata HOM05D004451 ORTHO05D005177 4.4e-89 332.0 292 65.8
Lj9C321G12 Lonicera japonica HOM05D004451 ORTHO05D005177 4.4e-89 332.0 208 80.8
PSO170G0588 Papaver somniferum HOM05D004451 ORTHO05D005177 7.5e-89 331.3 269 69.5
Nitab4.5_0005392g0030 Nicotiana tabacum HOM05D004451 ORTHO05D005177 8.3e-88 327.8 291 66.0
Sabra09G0074000 Salix brachista HOM05D004451 ORTHO05D005177 8.3e-88 327.8 351 59.3
PGSC0003DMG400025865 Solanum tuberosum HOM05D004451 ORTHO05D005177 8.3e-88 327.8 297 64.3
FAN24G2858 Fragaria x ananassa HOM05D004451 ORTHO05D005177 1.1e-87 327.4 287 67.2
MSTRG.20184 Avicennia marina HOM05D004451 ORTHO05D005177 1.4e-87 327.0 293 65.2
AUR62010302 Chenopodium quinoa HOM05D004451 ORTHO05D005177 1.4e-87 327.0 302 66.2
Sopen01g049830 Solanum pennellii HOM05D004451 ORTHO05D005177 1.4e-87 327.0 297 64.0
Solyc01g107640.3 Solanum lycopersicum HOM05D004451 ORTHO05D005177 3.2e-87 325.9 289 67.5
FAN15G2242 Fragaria x ananassa HOM05D004451 ORTHO05D005177 4.1e-87 325.5 301 64.8
CiPaw.05G011200 Carya illinoinensis HOM05D004451 ORTHO05D005177 7.1e-87 324.7 290 66.6
Hund06320 Selenicereus undatus HOM05D004451 ORTHO05D005177 9.2e-87 324.3 296 65.5
BcaB03g16278 Brassica carinata HOM05D004451 ORTHO05D005177 1.2e-86 323.9 253 70.8
Aqoxy5G01146 Aquilegia oxysepala HOM05D004451 ORTHO05D005177 2.1e-86 323.2 291 65.6
HanXRQChr10g0292341 Helianthus annuus HOM05D004451 ORTHO05D005177 2.1e-86 323.2 278 68.7
Nn5g30419 Nelumbo nucifera HOM05D004451 ORTHO05D005177 2.1e-86 323.2 291 65.6
EL10Ac9g22281 Beta vulgaris HOM05D004451 ORTHO05D005177 2.7e-86 322.8 291 66.0
Lsat_1_v5_gn_5_114881 Lactuca sativa HOM05D004451 ORTHO05D005177 3.5e-86 322.4 281 66.5
THA.LOC104819557 Tarenaya hassleriana HOM05D004451 ORTHO05D005177 3.5e-86 322.4 274 69.3
C07p08470 Brassica napus HOM05D004451 ORTHO05D005177 7.8e-86 321.2 275 66.5
MSTRG.16716 Avicennia marina HOM05D004451 ORTHO05D005177 1.0e-85 320.9 290 64.8
Carub.0003s2912 Capsella rubella HOM05D004451 ORTHO05D005177 1.3e-85 320.5 297 65.0
BcaB08g34587 Brassica carinata HOM05D004451 ORTHO05D005177 1.7e-85 320.1 296 63.5
BcaC06g36051 Brassica carinata HOM05D004451 ORTHO05D005177 2.3e-85 319.7 272 66.5
BolC7t41261H Brassica oleracea HOM05D004451 ORTHO05D005177 3.9e-85 318.9 275 66.5
Sp3g28570 Schrenkiella parvula HOM05D004451 ORTHO05D005177 3.9e-85 318.9 300 63.3
AT2G15290 Arabidopsis thaliana HOM05D004451 ORTHO05D005177 6.6e-85 318.2 297 63.0
Aa31LG8G13140 Aethionema arabicum HOM05D004451 ORTHO05D005177 8.6e-85 317.8 256 70.7
CiPaw.06G169600 Carya illinoinensis HOM05D004451 ORTHO05D005177 1.1e-84 317.4 296 64.5
BcaB07g31794 Brassica carinata HOM05D004451 ORTHO05D005177 1.5e-84 317.0 257 68.1
A09p10690 Brassica napus HOM05D004451 ORTHO05D005177 1.5e-84 317.0 280 64.6
AL3G47010 Arabidopsis lyrata HOM05D004451 ORTHO05D005177 2.5e-84 316.2 297 63.0
A07p05320 Brassica napus HOM05D004451 ORTHO05D005177 5.6e-84 315.1 275 66.2
BraA07t28325Z Brassica rapa HOM05D004451 ORTHO05D005177 5.6e-84 315.1 275 66.2
CARHR105660 Cardamine hirsuta HOM05D004451 ORTHO05D005177 5.6e-84 315.1 295 63.7
Sabra16G0188700 Salix brachista HOM05D004451 ORTHO05D005177 5.6e-84 315.1 353 56.7
CDE04G0259 Ceratophyllum demersum HOM05D004451 ORTHO05D005177 9.5e-84 314.3 195 82.6
Thhalv10022775m.g Eutrema salsugineum HOM05D004451 ORTHO05D005177 2.1e-83 313.2 292 63.4
BolC9t54158H Brassica oleracea HOM05D004451 ORTHO05D005177 3.6e-83 312.4 280 65.4
Peaxi162Scf00016g02324 Petunia axillaris HOM05D004451 ORTHO05D005177 8.1e-83 311.2 293 62.8
DCAR_001641 Daucus carota HOM05D004451 ORTHO05D005177 1.1e-82 310.8 193 81.9
SGA_v2.0_scaffold225G43078 Striga asiatica HOM05D004451 ORTHO05D005177 1.4e-82 310.5 287 66.2
C09p12690 Brassica napus HOM05D004451 ORTHO05D005177 3.1e-82 309.3 280 65.4
Hund00148 Selenicereus undatus HOM05D004451 ORTHO05D005177 4.0e-82 308.9 298 61.4
THA.LOC104807244 Tarenaya hassleriana HOM05D004451 ORTHO05D005177 2.0e-81 306.6 279 65.6
Ah.01g018220 Amaranthus hybridus HOM05D004451 ORTHO05D005177 1.3e-80 303.9 302 61.9
Rhsim11G0160300 Rhododendron simsii HOM05D004451 ORTHO05D005177 4.9e-80 302.0 192 81.2
Eucgr.E02954 Eucalyptus grandis HOM05D004451 ORTHO05D005177 6.4e-80 301.6 290 65.9
Dinv15761 Davidia involucrata HOM05D004451 ORTHO05D005177 1.2e-78 297.4 274 65.0
BcaC06g31580 Brassica carinata HOM05D004451 ORTHO05D005177 2.7e-78 296.2 193 81.3
SEGI_03021 Sequoiadendron giganteum HOM05D004451 ORTHO05D005177 7.3e-76 288.1 207 73.4
Os02g0187600 Oryza sativa ssp. japonica HOM05D004451 ORTHO05D005177 1.1e-74 284.3 276 60.1
vmacro19524 Vaccinium macrocarpon HOM05D004451 ORTHO05D005177 3.1e-74 282.7 346 54.0
HPP92_004770 Vanilla planifolia HOM05D004451 ORTHO05D005177 6.9e-74 281.6 287 57.5
Zm00001eb206410 Zea mays HOM05D004451 ORTHO05D005177 6.9e-74 281.6 182 79.7
Os06g0638100 Oryza sativa ssp. japonica HOM05D004451 ORTHO05D005177 5.8e-73 278.5 282 60.3
Pp3c27_4260 Physcomitrium patens HOM05D004451 ORTHO05D005177 2.2e-72 276.6 222 69.4
BraA09t36712Z Brassica rapa HOM05D004451 ORTHO05D005177 2.9e-72 276.2 337 52.2
Sc17g0003020 Simmondsia chinensis HOM05D004451 ORTHO05D005177 3.8e-72 275.8 280 62.1
ECA240G4367 Erigeron canadensis HOM05D004451 ORTHO05D005177 7.1e-71 271.6 276 60.5
Pp3c1_21740 Physcomitrium patens HOM05D004451 ORTHO05D005177 7.1e-71 271.6 204 70.1
Pp3c10_9500 Physcomitrium patens HOM05D004451 ORTHO05D005177 1.2e-70 270.8 205 68.3
Zm00001eb387350 Zea mays HOM05D004451 ORTHO05D005177 1.2e-70 270.8 196 72.4
Mapoly0049s0087 Marchantia polymorpha HOM05D004451 ORTHO05D005177 4.6e-70 268.9 222 66.2
unitig_22.g5194 Utricularia gibba HOM05D004451 ORTHO05D005177 4.6e-70 268.9 291 56.0
DCAR_021989 Daucus carota HOM05D004451 ORTHO05D005177 5.1e-69 265.4 255 61.6
BcaC04g23051 Brassica carinata HOM05D005496 ORTHO05D006677 1.1e-68 264.2 242 64.5
AagrBONN_evm.TU.Sc2ySwM_344.1281 Anthoceros agrestis HOM05D004451 ORTHO05D005177 1.3e-67 260.8 205 66.8
ATR0691G207 Amborella trichopoda HOM05D004451 ORTHO05D005177 1.2e-65 254.2 225 63.6
unitig_8.g3679 Utricularia gibba HOM05D004451 ORTHO05D005177 3.3e-60 236.1 182 66.5
SMO118G0560 Selaginella moellendorffii HOM05D004451 ORTHO05D005177 3.2e-55 219.5 181 62.4
CBR_g39267 Chara braunii HOM05D004451 ORTHO05D005177 1.0e-53 214.5 196 60.7
CDE06G1648 Ceratophyllum demersum HOM05D004451 ORTHO05D005177 4.5e-49 199.1 205 58.0
SHI05289 Sapria himalayana HOM05D004451 ORTHO05D005177 1.0e-48 198.0 192 58.9
vmacro02006 Vaccinium macrocarpon HOM05D004451 ORTHO05D005177 2.7e-46 189.9 193 58.0
TAR381G0937 Trochodendron aralioides HOM05D004451 ORTHO05D005177 2.9e-40 169.9 107 85.0
Zm00001eb234680 Zea mays HOM05D004451 ORTHO05D005177 3.6e-38 162.9 281 42.7
CAN.G1231.10 Capsicum annuum HOM05D004451 ORTHO05D005177 4.5e-33 146.0 89 78.7
MCO10G127 Micromonas commoda HOM05D004451 ORTHO05D005177 1.7e-32 144.1 257 39.7
SEGI_11302 Sequoiadendron giganteum HOM05D004451 ORTHO05D005177 1.1e-31 141.4 101 70.3
Cre10.g454734 Chlamydomonas reinhardtii HOM05D000133 ORTHO05D005177 3.1e-26 123.2 275 36.4
CAN.G3385.1 Capsicum annuum HOM05D004451 ORTHO05D005177 3.8e-24 116.3 78 79.5
PRCOL_00004645 Prasinoderma coloniale HOM05D004451 ORTHO05D005177 5.0e-24 115.9 208 38.9
VMungo0251G3374 Vigna mungo HOM05D004451 ORTHO05D005177 3.2e-23 113.2 102 65.7
HanXRQChr01g0018911 Helianthus annuus HOM05D004451 ORTHO05D005177 6.1e-22 109.0 63 84.1
HanXRQChr17g0567381 Helianthus annuus HOM05D004451 ORTHO05D005177 1.8e-21 107.5 63 82.5
HPP92_008279 Vanilla planifolia HOM05D004451 ORTHO05D005177 5.2e-21 105.9 165 46.7
CBR_g28861 Chara braunii HOM05D004451 ORTHO05D009492 1.1e-20 104.8 87 60.9
Cre11.g467759 Chlamydomonas reinhardtii HOM05D027551 ORTHO05D005177 5.5e-15 85.9 179 36.3
HanXRQChr05g0151971 Helianthus annuus HOM05D002664 ORTHO05D002974 9.7e-12 75.1 46 76.1


User provided reference genes

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