Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G261500 Glycine max HOM05D001213 ORTHO05D001042 5.3e-47 190.7 94 100.0
Glyma.20G129300 Glycine max HOM05D001213 ORTHO05D001042 1.9e-17 92.4 188 38.8
Lj5g0028238 Lotus japonicus HOM05D001213 ORTHO05D001042 9.4e-12 73.6 188 33.0
Lalb_Chr02g0145331 Lupinus albus HOM05D001213 ORTHO05D001042 1.8e-10 69.3 179 30.7
VMungo0720G1046 Vigna mungo HOM05D001213 ORTHO05D001042 1.1e-09 66.6 182 31.9
COL.COLO4_32601 Corchorus olitorius HOM05D001213 ORTHO05D001042 4.3e-09 64.7 51 56.9
Phvul.007G040500 Phaseolus vulgaris HOM05D001213 ORTHO05D001042 4.3e-09 64.7 179 33.0
Medtr1g107475 Medicago truncatula HOM05D001213 ORTHO05D001042 5.7e-09 64.3 174 30.5
Medtr1g018750 Medicago truncatula HOM05D001213 ORTHO05D001042 7.4e-09 63.9 55 54.5
Psat7g206560 Pisum sativum HOM05D001213 ORTHO05D001042 1.3e-08 63.2 172 30.2
Potri.014G022700 Populus trichocarpa HOM05D001213 ORTHO05D001042 1.7e-08 62.8 64 51.6
Rhsim11G0160500 Rhododendron simsii HOM05D001213 ORTHO05D001042 2.2e-08 62.4 49 57.1
Migut.N01170 Erythranthe guttata HOM05D001213 ORTHO05D001042 2.8e-08 62.0 182 29.7
Sabra14G0015100 Salix brachista HOM05D001213 ORTHO05D001042 2.8e-08 62.0 48 58.3
Sabra14G0015500 Salix brachista HOM05D001213 ORTHO05D001042 4.8e-08 61.2 129 32.6
Sabra14G0015600 Salix brachista HOM05D001213 ORTHO05D001042 4.8e-08 61.2 129 32.6
arahy.Tifrunner.gnm1.ann1.BMP346 Arachis hypogaea HOM05D001213 ORTHO05D001042 6.3e-08 60.8 56 53.6
CSS0040848 Camellia sinensis var. sinensis HOM05D001213 ORTHO05D001042 8.2e-08 60.5 173 30.1
Duzib248G0154 Durio zibethinus HOM05D001213 ORTHO05D001042 8.2e-08 60.5 48 58.3
Lj5g0025804 Lotus japonicus HOM05D001213 ORTHO05D001042 1.1e-07 60.1 58 46.6
Oeu013748.1 Olea europaea HOM05D001213 ORTHO05D001042 1.1e-07 60.1 43 60.5
Ca_11081_v3 Cicer arietinum L. HOM05D001213 ORTHO05D001042 1.8e-07 59.3 174 28.7
Thecc.02G107200 Theobroma cacao HOM05D001213 ORTHO05D001042 2.4e-07 58.9 51 54.9
arahy.Tifrunner.gnm1.ann1.TZE0Q8 Arachis hypogaea HOM05D001213 ORTHO05D001042 3.1e-07 58.5 56 51.8
GSVIVG01003163001 Vitis vinifera HOM05D001213 ORTHO05D001042 5.3e-07 57.8 53 54.7
Actinidia00414 Actinidia chinensis HOM05D001213 ORTHO05D001042 6.9e-07 57.4 45 57.8
MSTRG.5344 Avicennia marina HOM05D001213 ORTHO05D001042 6.9e-07 57.4 46 54.3
CDE02G1338 Ceratophyllum demersum HOM05D001213 ORTHO05D001042 6.9e-07 57.4 52 51.9
Eucgr.F00001 Eucalyptus grandis HOM05D001213 ORTHO05D001042 9.1e-07 57.0 46 54.3
Lsat_1_v5_gn_5_114761 Lactuca sativa HOM05D001213 ORTHO05D001042 9.1e-07 57.0 45 57.8
Psat6g014120 Pisum sativum HOM05D001213 ORTHO05D001042 9.1e-07 57.0 47 51.1
Atru.chr5.2584 Acer truncatum HOM05D001213 ORTHO05D001042 1.2e-06 56.6 50 50.0
Sed0019510 Sechium edule HOM05D001213 ORTHO05D001042 1.2e-06 56.6 48 56.2
Manes.18G041900 Manihot esculenta HOM05D001213 ORTHO05D001042 1.5e-06 56.2 50 56.0
Sc08g0001430 Simmondsia chinensis HOM05D001213 ORTHO05D001042 1.5e-06 56.2 55 52.7
TPR.G30566 Trifolium pratense HOM05D001213 ORTHO05D001042 1.5e-06 56.2 54 53.7
vmacro02008 Vaccinium macrocarpon HOM05D001213 ORTHO05D001042 1.5e-06 56.2 41 58.5
CARHR242580 Cardamine hirsuta HOM05D001213 ORTHO05D001042 2.0e-06 55.8 48 52.1
Lalb_Chr22g0354861 Lupinus albus HOM05D001213 ORTHO05D001042 2.0e-06 55.8 57 47.4
Sabra14G0015200 Salix brachista HOM05D001213 ORTHO05D001042 2.0e-06 55.8 41 61.0
Sabra14G0015300 Salix brachista HOM05D001213 ORTHO05D001042 2.0e-06 55.8 41 61.0
Sabra14G0015400 Salix brachista HOM05D001213 ORTHO05D001042 2.0e-06 55.8 41 61.0
TAR628G0022 Trochodendron aralioides HOM05D001213 ORTHO05D001042 2.0e-06 55.8 48 52.1
Cfa004572 Carpinus fangiana HOM05D001213 ORTHO05D001042 2.6e-06 55.5 48 47.9
Gohir.D06G019200 Gossypium hirsutum HOM05D001213 ORTHO05D001042 2.6e-06 55.5 58 44.8
Gorai.010G023300 Gossypium raimondii HOM05D001213 ORTHO05D001042 2.6e-06 55.5 58 44.8
PGR102G2069 Punica granatum HOM05D001213 ORTHO05D001042 2.6e-06 55.5 43 58.1
Atru.chr13.756 Acer truncatum HOM05D001213 ORTHO05D001042 3.4e-06 55.1 50 54.0
Haze_10164 Corylus avellana HOM05D001213 ORTHO05D001042 3.4e-06 55.1 48 50.0
Actinidia17476 Actinidia chinensis HOM05D001213 ORTHO05D001042 4.5e-06 54.7 45 53.3
CAN.G65.167 Capsicum annuum HOM05D001213 ORTHO05D001042 4.5e-06 54.7 43 55.8
Manes.05G177700 Manihot esculenta HOM05D001213 ORTHO05D001042 4.5e-06 54.7 50 52.0
AL7G17100 Arabidopsis lyrata HOM05D001213 ORTHO05D001042 5.9e-06 54.3 48 52.1
Eucgr.F00179 Eucalyptus grandis HOM05D001213 ORTHO05D001042 5.9e-06 54.3 46 50.0
Thhalv10026018m.g Eutrema salsugineum HOM05D001213 ORTHO05D001042 5.9e-06 54.3 48 52.1
PSO541G2453 Papaver somniferum HOM05D001213 ORTHO05D001042 5.9e-06 54.3 51 49.0
QL11p033938 Quercus lobata HOM05D001213 ORTHO05D001042 5.9e-06 54.3 48 50.0
TWI79G0914 Tripterygium wilfordii HOM05D001213 ORTHO05D001042 5.9e-06 54.3 48 52.1
AT4G34215 Arabidopsis thaliana HOM05D001213 ORTHO05D001042 7.7e-06 53.9 48 52.1
Gohir.A06G021700 Gossypium hirsutum HOM05D001213 ORTHO05D001042 7.7e-06 53.9 68 42.6
Lj5A213T90 Lonicera japonica HOM05D001213 ORTHO05D001042 7.7e-06 53.9 54 46.3
PSO675G3651 Papaver somniferum HOM05D001213 ORTHO05D001042 7.7e-06 53.9 51 49.0
HPP92_017267 Vanilla planifolia HOM05D001213 ORTHO05D001042 7.7e-06 53.9 53 52.8
HPP92_017278 Vanilla planifolia HOM05D001213 ORTHO05D001042 7.7e-06 53.9 53 52.8


User provided reference genes

Program Settings