Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G260500 Glycine max HOM05D004481 ORTHO05D005350 4.0e-170 601.3 292 100.0
Glyma.20G130700 Glycine max HOM05D004481 ORTHO05D005350 9.9e-161 570.1 291 95.5
VMungo0720G1503 Vigna mungo HOM05D004481 ORTHO05D005350 2.4e-151 538.9 292 90.4
Phvul.007G041700 Phaseolus vulgaris HOM05D004481 ORTHO05D005350 7.4e-148 527.3 287 89.2
Ca_11058_v3 Cicer arietinum L. HOM05D004481 ORTHO05D005350 4.2e-143 511.5 291 84.9
Psat6g216600 Pisum sativum HOM05D004481 ORTHO05D005350 2.3e-141 505.8 291 83.5
arahy.Tifrunner.gnm1.ann1.5RC8JY Arachis hypogaea HOM05D004481 ORTHO05D005350 5.1e-141 504.6 291 83.2
Lj5g0012751 Lotus japonicus HOM05D004481 ORTHO05D005350 8.7e-141 503.8 289 83.4
TPR.G27083 Trifolium pratense HOM05D004481 ORTHO05D005350 5.6e-140 501.1 291 82.5
Lalb_Chr02g0145211 Lupinus albus HOM05D004481 ORTHO05D005350 1.6e-139 499.6 289 82.4
Lalb_Chr21g0308241 Lupinus albus HOM05D004481 ORTHO05D005350 1.1e-138 496.9 292 82.9
Medtr1g107045 Medicago truncatula HOM05D004481 ORTHO05D005350 2.4e-138 495.7 291 80.8
RcHm_v2.0_Chr6g0254491 Rosa chinensis HOM05D004481 ORTHO05D005350 2.9e-128 462.2 290 76.2
FAN24G0473 Fragaria x ananassa HOM05D004481 ORTHO05D005350 5.5e-127 458.0 290 75.5
FvH4_2g04780 Fragaria vesca HOM05D004481 ORTHO05D005350 6.1e-126 454.5 286 75.9
Ciclev10028970m.g Citrus clementina HOM05D004481 ORTHO05D005350 1.3e-125 453.4 289 74.7
Duzib052G1089 Durio zibethinus HOM05D004481 ORTHO05D005350 2.3e-125 452.6 288 75.0
arahy.Tifrunner.gnm1.ann1.PGW4NS Arachis hypogaea HOM05D004481 ORTHO05D005350 3.0e-125 452.2 256 84.8
GSVIVG01037896001 Vitis vinifera HOM05D004481 ORTHO05D005350 1.1e-124 450.3 288 74.7
Gohir.A12G021100 Gossypium hirsutum HOM05D004481 ORTHO05D005350 1.5e-124 449.9 289 74.0
Thecc.02G111500 Theobroma cacao HOM05D004481 ORTHO05D005350 2.5e-124 449.1 286 75.2
FAN27G3202 Fragaria x ananassa HOM05D004481 ORTHO05D005350 3.3e-124 448.7 284 75.0
Gohir.D12G021400 Gossypium hirsutum HOM05D004481 ORTHO05D005350 7.4e-124 447.6 289 73.7
Gorai.008G021700 Gossypium raimondii HOM05D004481 ORTHO05D005350 7.4e-124 447.6 289 73.7
CiPaw.06G168400 Carya illinoinensis HOM05D004481 ORTHO05D005350 9.7e-124 447.2 288 75.3
Manes.07G066500 Manihot esculenta HOM05D004481 ORTHO05D005350 3.7e-123 445.3 287 74.9
Cpa.g.sc106.118 Carica papaya HOM05D004481 ORTHO05D005350 3.1e-122 442.2 288 74.0
Prupe.8G137600 Prunus persica HOM05D004481 ORTHO05D005350 5.3e-122 441.4 288 73.3
TWI79G1728 Tripterygium wilfordii HOM05D004481 ORTHO05D005350 5.3e-122 441.4 288 72.9
TAR376G0836 Trochodendron aralioides HOM05D004481 ORTHO05D005350 5.3e-122 441.4 288 73.6
TAR628G0287 Trochodendron aralioides HOM05D004481 ORTHO05D005350 1.5e-121 439.9 288 73.6
Nn1g04655 Nelumbo nucifera HOM05D004481 ORTHO05D005350 2.6e-121 439.1 290 72.1
Eucgr.I01088 Eucalyptus grandis HOM05D004481 ORTHO05D005350 1.7e-120 436.4 289 73.7
Potri.001G298500 Populus trichocarpa HOM05D004481 ORTHO05D005350 1.7e-120 436.4 290 72.4
Sabra09G0071800 Salix brachista HOM05D004481 ORTHO05D005350 1.7e-120 436.4 288 73.6
CANSAT25G3441 Cannabis sativa HOM05D004481 ORTHO05D005350 2.2e-120 436.0 289 73.0
MD10G1100100 Malus domestica HOM05D004481 ORTHO05D005350 2.2e-120 436.0 288 72.9
PGR142G4205 Punica granatum HOM05D004481 ORTHO05D005350 3.8e-120 435.3 288 72.2
Atru.chr5.2445 Acer truncatum HOM05D004481 ORTHO05D005350 5.0e-120 434.9 289 71.3
CANSAT25G2190 Cannabis sativa HOM05D004481 ORTHO05D005350 8.5e-120 434.1 289 72.7
Actinidia27975 Actinidia chinensis HOM05D004481 ORTHO05D005350 2.7e-118 429.1 289 73.7
Sed0018810 Sechium edule HOM05D004481 ORTHO05D005350 6.1e-118 427.9 289 71.3
Rhsim11G0156300 Rhododendron simsii HOM05D004481 ORTHO05D005350 1.0e-117 427.2 286 71.0
Carub.0007s0609 Capsella rubella HOM05D004481 ORTHO05D005350 2.3e-117 426.0 288 72.2
Potri.009G093200 Populus trichocarpa HOM05D004481 ORTHO05D005350 2.3e-117 426.0 290 72.4
MSTRG.20195 Avicennia marina HOM05D004481 ORTHO05D005350 3.9e-117 425.2 288 70.1
CARHR242510 Cardamine hirsuta HOM05D004481 ORTHO05D005350 3.9e-117 425.2 288 72.6
CSS0002878 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 6.7e-117 424.5 289 72.0
CSS0015264 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 6.7e-117 424.5 289 72.0
Hma1.2p1_1023F.1_g248990 Hydrangea macrophylla HOM05D004481 ORTHO05D005350 2.0e-116 422.9 289 72.0
TWI75G0922 Tripterygium wilfordii HOM05D004481 ORTHO05D005350 2.6e-116 422.5 288 71.9
AUR62010332 Chenopodium quinoa HOM05D004481 ORTHO05D005350 5.7e-116 421.4 290 69.0
CSS0013759 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 7.4e-116 421.0 288 71.5
MELO3C018500.2 Cucumis melo HOM05D004481 ORTHO05D005350 7.4e-116 421.0 290 69.7
CsaV3_7G008050 Cucumis sativus L. HOM05D004481 ORTHO05D005350 7.4e-116 421.0 289 68.5
Cc02_g19430 Coffea canephora HOM05D004481 ORTHO05D005350 9.7e-116 420.6 289 70.6
THA.LOC104807234 Tarenaya hassleriana HOM05D004481 ORTHO05D005350 9.7e-116 420.6 289 70.6
Oeu037260.1 Olea europaea HOM05D004481 ORTHO05D005350 1.3e-115 420.2 289 69.6
Aa31LG2G16850 Aethionema arabicum HOM05D004481 ORTHO05D005350 1.7e-115 419.9 288 72.2
Thhalv10025895m.g Eutrema salsugineum HOM05D004481 ORTHO05D005350 2.2e-115 419.5 288 70.5
Nitab4.5_0002647g0020 Nicotiana tabacum HOM05D004481 ORTHO05D005350 4.8e-115 418.3 294 69.0
AT4G34270 Arabidopsis thaliana HOM05D004481 ORTHO05D005350 6.3e-115 417.9 290 70.7
C01p04510 Brassica napus HOM05D004481 ORTHO05D005350 6.3e-115 417.9 288 71.5
ClCG02G006560 Citrullus lanatus HOM05D004481 ORTHO05D005350 8.2e-115 417.5 299 67.6
Sp7g32060 Schrenkiella parvula HOM05D004481 ORTHO05D005350 8.2e-115 417.5 288 70.8
AL7G17000 Arabidopsis lyrata HOM05D004481 ORTHO05D005350 1.1e-114 417.2 288 70.5
BolC1t00437H Brassica oleracea HOM05D004481 ORTHO05D005350 1.1e-114 417.2 288 71.2
A01p04140 Brassica napus HOM05D004481 ORTHO05D005350 1.4e-114 416.8 288 70.8
PGSC0003DMG400025761 Solanum tuberosum HOM05D004481 ORTHO05D005350 1.4e-114 416.8 289 70.6
BcaNung04989 Brassica carinata HOM05D004481 ORTHO05D005350 3.1e-114 415.6 288 71.2
Nitab4.5_0001480g0100 Nicotiana tabacum HOM05D004481 ORTHO05D005350 4.1e-114 415.2 289 69.9
Migut.B00402 Erythranthe guttata HOM05D004481 ORTHO05D005350 1.2e-113 413.7 289 68.9
Lj5A215G63 Lonicera japonica HOM05D004481 ORTHO05D005350 1.2e-113 413.7 326 66.0
THA.LOC104819549 Tarenaya hassleriana HOM05D004481 ORTHO05D005350 1.2e-113 413.7 288 69.1
CAN.G606.21 Capsicum annuum HOM05D004481 ORTHO05D005350 1.5e-113 413.3 288 69.1
Solyc10g049850.3 Solanum lycopersicum HOM05D004481 ORTHO05D005350 2.0e-113 412.9 286 69.6
Sc18g0005550 Simmondsia chinensis HOM05D004481 ORTHO05D005350 2.6e-113 412.5 289 70.9
Nn5g30459 Nelumbo nucifera HOM05D004481 ORTHO05D005350 3.4e-113 412.1 288 69.8
Cfa004607 Carpinus fangiana HOM05D004481 ORTHO05D005350 5.0e-112 408.3 256 76.6
Nitab4.5_0003699g0050 Nicotiana tabacum HOM05D004481 ORTHO05D005350 8.5e-112 407.5 297 67.0
SGA_v2.0_scaffold225G42995 Striga asiatica HOM05D004481 ORTHO05D005350 1.9e-111 406.4 289 68.9
BraA01t00403Z Brassica rapa HOM05D004481 ORTHO05D005350 5.5e-111 404.8 303 66.3
QL11p032653 Quercus lobata HOM05D004481 ORTHO05D005350 1.6e-110 403.3 256 77.3
CSS0003948 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 2.1e-110 402.9 289 67.8
HanXRQChr04g0105981 Helianthus annuus HOM05D004481 ORTHO05D005350 6.1e-110 401.4 288 66.7
Peaxi162Scf00016g02527 Petunia axillaris HOM05D004481 ORTHO05D005350 2.3e-109 399.4 327 61.8
Sed0023236 Sechium edule HOM05D004481 ORTHO05D005350 3.0e-109 399.1 296 65.2
SalBow6G4388 Salvia bowleyana HOM05D004481 ORTHO05D005350 3.9e-109 398.7 328 61.0
SalBow6G4779 Salvia bowleyana HOM05D004481 ORTHO05D005350 3.9e-109 398.7 328 61.0
Dinv42206 Davidia involucrata HOM05D002228 ORTHO05D005350 5.2e-109 398.3 240 78.3
PSO210G1902 Papaver somniferum HOM05D004481 ORTHO05D005350 5.7e-108 394.8 289 66.4
PSO170G4403 Papaver somniferum HOM05D004481 ORTHO05D005350 9.7e-108 394.0 291 67.0
ECA234G2632 Erigeron canadensis HOM05D004481 ORTHO05D005350 3.7e-107 392.1 288 64.9
unitig_0.g879 Utricularia gibba HOM05D004481 ORTHO05D005350 1.4e-106 390.2 289 66.1
Aqoxy5G01130 Aquilegia oxysepala HOM05D004481 ORTHO05D005350 1.8e-106 389.8 288 66.7
vmacro01990 Vaccinium macrocarpon HOM05D004481 ORTHO05D005350 2.0e-105 386.3 292 64.7
FAN15G0583 Fragaria x ananassa HOM05D004481 ORTHO05D005350 1.3e-104 383.6 290 65.2
Hund06305 Selenicereus undatus HOM05D004481 ORTHO05D005350 6.5e-104 381.3 289 66.1
DCAR_021976 Daucus carota HOM05D004481 ORTHO05D005350 1.2e-102 377.1 256 70.3
Haze_10202 Corylus avellana HOM05D004481 ORTHO05D005350 2.1e-102 376.3 291 65.6
EL10Ac9g22252 Beta vulgaris HOM05D004481 ORTHO05D005350 3.6e-102 375.6 286 63.6
Zm00001eb214380 Zea mays HOM05D004481 ORTHO05D005350 4.0e-101 372.1 281 63.3
PGSC0003DMG400023263 Solanum tuberosum HOM05D004481 ORTHO05D005350 2.6e-100 369.4 256 70.3
CDE02G3699 Ceratophyllum demersum HOM05D004481 ORTHO05D005350 3.3e-100 369.0 287 63.1
Rhsim11G0157800 Rhododendron simsii HOM05D004481 ORTHO05D005350 7.5e-100 367.9 286 64.3
CiPaw.05G013400 Carya illinoinensis HOM05D004481 ORTHO05D005350 1.1e-98 364.0 228 75.4
Os03g0760600 Oryza sativa ssp. japonica HOM05D004481 ORTHO05D005350 4.1e-98 362.1 284 62.3
Lsat_1_v5_gn_5_116421 Lactuca sativa HOM05D004481 ORTHO05D005350 1.3e-96 357.1 257 67.7
FAN20G2321 Fragaria x ananassa HOM05D004481 ORTHO05D005350 8.8e-93 344.4 286 60.5
ATR0661G316 Amborella trichopoda HOM05D004481 ORTHO05D005350 3.4e-92 342.4 241 66.4
SEGI_10030 Sequoiadendron giganteum HOM05D004481 ORTHO05D005350 3.4e-92 342.4 284 59.2
SHI05271 Sapria himalayana HOM05D004481 ORTHO05D005350 4.8e-91 338.6 257 66.5
Hma1.2p1_1023F.1_g249000 Hydrangea macrophylla HOM05D004481 ORTHO05D005350 1.1e-87 327.4 208 75.0
Mapoly0064s0080 Marchantia polymorpha HOM05D004481 ORTHO05D005350 1.9e-87 326.6 287 55.7
Ah.01g010900 Amaranthus hybridus HOM05D004481 ORTHO05D005350 6.1e-86 321.6 286 57.7
Pp3c10_18670 Physcomitrium patens HOM05D004481 ORTHO05D005350 1.3e-83 313.9 283 52.7
SMO361G0327 Selaginella moellendorffii HOM05D004481 ORTHO05D005350 1.3e-80 303.9 280 53.9
AUR62039053 Chenopodium quinoa HOM05D004481 ORTHO05D005350 1.1e-79 300.8 290 53.4
AagrBONN_evm.TU.Sc2ySwM_228.2403 Anthoceros agrestis HOM05D004481 ORTHO05D005350 9.5e-79 297.7 248 59.3
Actinidia00401 Actinidia chinensis HOM05D004481 ORTHO05D005350 1.7e-72 276.9 231 64.9
Sopen10g019880 Solanum pennellii HOM05D004481 ORTHO05D005350 3.5e-65 252.7 171 69.0
HPP92_010143 Vanilla planifolia HOM05D004481 ORTHO05D005350 7.3e-63 245.0 194 63.4
BcaNung04162 Brassica carinata HOM05D004481 ORTHO05D005350 7.1e-58 228.4 300 46.7
MCO13G563 Micromonas commoda HOM05D004481 ORTHO05D005350 3.4e-52 209.5 264 44.3
PRCOL_00000955 Prasinoderma coloniale HOM05D004481 ORTHO05D005350 1.6e-46 190.7 273 39.2
MD00G1108700 Malus domestica HOM05D004481 ORTHO05D005350 8.1e-46 188.3 131 67.9
BolC3t17849H Brassica oleracea HOM05D004481 ORTHO05D005350 9.9e-44 181.4 151 63.6
BcaC01g03137 Brassica carinata HOM05D004481 ORTHO05D005350 5.4e-42 175.6 154 61.0
CSS0037652 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 5.4e-42 175.6 152 61.2
C03p55700 Brassica napus HOM05D004481 ORTHO05D005350 3.5e-41 172.9 151 61.6
BcaC08g44162 Brassica carinata HOM05D004481 ORTHO05D005350 1.3e-38 164.5 139 63.3
CBR_g36716 Chara braunii HOM05D004481 ORTHO05D005350 4.2e-34 149.4 109 62.4
Cre17.g734150 Chlamydomonas reinhardtii HOM05D004481 ORTHO05D005350 1.8e-29 134.0 368 29.1
Cfa024874 Carpinus fangiana HOM05D004481 ORTHO05D005350 2.0e-28 130.6 229 33.6
BcaNung04988 Brassica carinata HOM05D004481 ORTHO05D005350 2.4e-26 123.6 93 65.6
Peaxi162Scf00003g02548 Petunia axillaris HOM05D004481 ORTHO05D005350 1.5e-23 114.4 172 41.3
VMungo0251G0056 Vigna mungo HOM05D005531 ORTHO05D006332 4.3e-23 112.8 123 53.7
Sopen01g049660 Solanum pennellii HOM05D004481 ORTHO05D005350 3.7e-22 109.8 83 62.7
Actinidia34390 Actinidia chinensis HOM05D004481 ORTHO05D005350 1.1e-21 108.2 74 64.9
Hund00159 Selenicereus undatus HOM05D004481 ORTHO05D005350 1.4e-21 107.8 101 53.5
Sopen01g049670 Solanum pennellii HOM05D004481 ORTHO05D005350 2.4e-21 107.1 87 62.1
RcHm_v2.0_Chr6g0257521 Rosa chinensis HOM05D004481 ORTHO05D005350 3.8e-19 99.8 63 66.7
Lsat_1_v5_gn_5_116621 Lactuca sativa HOM05D000552 ORTHO05D000469 2.8e-14 83.6 110 45.5
CSS0049178 Camellia sinensis var. sinensis HOM05D002228 ORTHO05D002347 4.8e-14 82.8 71 54.9
CSS0039068 Camellia sinensis var. sinensis HOM05D002228 ORTHO05D002347 8.2e-14 82.0 78 51.3
PRCOL_00004768 Prasinoderma coloniale HOM05D004481 ORTHO05D005350 4.1e-13 79.7 188 29.3
MD00G1108800 Malus domestica HOM05D004481 ORTHO05D005350 1.2e-12 78.2 139 36.7
Atru.chr3.1909 Acer truncatum HOM05D004481 ORTHO05D005350 2.0e-12 77.4 93 44.1
GSVIVG01003443001 Vitis vinifera HOM05D004481 ORTHO05D005350 2.0e-12 77.4 46 69.6
GSVIVG01003244001 Vitis vinifera HOM05D004481 ORTHO05D005350 3.4e-12 76.6 46 69.6
GSVIVG01030751001 Vitis vinifera HOM05D004481 ORTHO05D005350 3.4e-12 76.6 46 69.6
Cfa005651 Carpinus fangiana HOM05D004481 ORTHO05D005350 5.9e-12 75.9 61 60.7
Atru.chr13.2259 Acer truncatum HOM05D004481 ORTHO05D005350 1.7e-11 74.3 89 46.1
Atru.chr7.688 Acer truncatum HOM05D004481 ORTHO05D005350 1.7e-11 74.3 89 46.1
VMungo1309G0877 Vigna mungo HOM05D000050 ORTHO05D000380 1.7e-11 74.3 49 77.6
GSVIVG01030757001 Vitis vinifera HOM05D004481 ORTHO05D005350 1.7e-11 74.3 46 65.2
Atru.chr12.2105 Acer truncatum HOM05D004481 ORTHO05D005350 2.2e-11 73.9 93 44.1
Solyc01g107420.2 Solanum lycopersicum HOM05D004481 ORTHO05D005350 1.2e-09 68.2 217 29.0
Cfa017289 Carpinus fangiana HOM05D004481 ORTHO05D005350 2.7e-09 67.0 57 57.9


User provided reference genes

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