Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G259200 Glycine max HOM05D006153 ORTHO05D007701 8.2e-54 213.4 102 100.0
Glyma.20G131700 Glycine max HOM05D006153 ORTHO05D007701 1.1e-45 186.4 102 91.2
Phvul.007G043000 Phaseolus vulgaris HOM05D006153 ORTHO05D007701 7.5e-39 163.7 103 79.6
VMungo0720G0345 Vigna mungo HOM05D006153 ORTHO05D007701 5.3e-37 157.5 101 79.2
arahy.Tifrunner.gnm1.ann1.EHR7LK Arachis hypogaea HOM05D006153 ORTHO05D007701 4.4e-31 137.9 99 67.7
Lalb_Chr06g0165291 Lupinus albus HOM05D006153 ORTHO05D007701 2.3e-27 125.6 101 66.3
Lalb_Chr02g0145121 Lupinus albus HOM05D006153 ORTHO05D007701 3.6e-25 118.2 100 61.0
Lj5g0020623 Lotus japonicus HOM05D006153 ORTHO05D007701 2.0e-23 112.5 102 63.7
Lj5g0024415 Lotus japonicus HOM05D006153 ORTHO05D007701 3.4e-23 111.7 99 63.6
QL11p031990 Quercus lobata HOM05D006153 ORTHO05D007701 4.9e-22 107.8 80 61.2
Lj1g0020403 Lotus japonicus HOM05D006153 ORTHO05D007701 3.1e-21 105.1 101 54.5
Sabra16G0186000 Salix brachista HOM05D006153 ORTHO05D007701 5.4e-21 104.4 102 52.9
CSS0010428 Camellia sinensis var. sinensis HOM05D006153 ORTHO05D007701 9.2e-21 103.6 101 55.4
Duzib132G0541 Durio zibethinus HOM05D006153 ORTHO05D007701 1.6e-20 102.8 99 50.5
Cfa004694 Carpinus fangiana HOM05D006153 ORTHO05D007701 1.3e-19 99.8 98 50.0
Gohir.A01G008400 Gossypium hirsutum HOM05D006153 ORTHO05D007701 5.0e-19 97.8 104 49.0
Duzib052G0610 Durio zibethinus HOM05D006153 ORTHO05D007701 6.6e-19 97.4 100 48.0
Cpa.g.sc200.7 Carica papaya HOM05D006153 ORTHO05D007701 8.6e-19 97.1 105 48.6
Potri.001G296900 Populus trichocarpa HOM05D006153 ORTHO05D007701 8.6e-19 97.1 58 70.7
QL11p029270 Quercus lobata HOM05D006153 ORTHO05D007701 8.6e-19 97.1 101 47.5
Haze_10289 Corylus avellana HOM05D006153 ORTHO05D007701 1.1e-18 96.7 94 45.7
Manes.07G064400 Manihot esculenta HOM05D006153 ORTHO05D007701 1.1e-18 96.7 108 47.2
Dinv15786 Davidia involucrata HOM05D006153 ORTHO05D007701 1.5e-18 96.3 100 50.0
Gorai.002G009800 Gossypium raimondii HOM05D006153 ORTHO05D007701 1.5e-18 96.3 102 49.0
Dinv42217 Davidia involucrata HOM05D006153 ORTHO05D007701 1.9e-18 95.9 101 53.5
Gohir.D13G044400 Gossypium hirsutum HOM05D006153 ORTHO05D007701 1.9e-18 95.9 99 48.5
Gorai.013G049200 Gossypium raimondii HOM05D006153 ORTHO05D007701 1.9e-18 95.9 99 48.5
Thecc.02G113400 Theobroma cacao HOM05D006153 ORTHO05D007701 4.3e-18 94.7 99 48.5
GSVIVG01037871001 Vitis vinifera HOM05D006153 ORTHO05D007701 7.3e-18 94.0 101 48.5
PGR042G3678 Punica granatum HOM05D006153 ORTHO05D007701 1.2e-17 93.2 103 45.6
CiPaw.05G015200 Carya illinoinensis HOM05D006153 ORTHO05D007701 1.6e-17 92.8 86 54.7
TAR381G0917 Trochodendron aralioides HOM05D006153 ORTHO05D007701 1.6e-17 92.8 99 45.5
COL.COLO4_32545 Corchorus olitorius HOM05D006153 ORTHO05D007701 3.6e-17 91.7 102 42.2
FAN20G1027 Fragaria x ananassa HOM05D006153 ORTHO05D007701 3.6e-17 91.7 101 50.5
FAN24G1230 Fragaria x ananassa HOM05D006153 ORTHO05D007701 3.6e-17 91.7 102 51.0
FAN27G0726 Fragaria x ananassa HOM05D006153 ORTHO05D007701 6.1e-17 90.9 102 49.0
Actinidia34374 Actinidia chinensis HOM05D006153 ORTHO05D007701 8.0e-17 90.5 101 44.6
FvH4_2g04480 Fragaria vesca HOM05D006153 ORTHO05D007701 8.0e-17 90.5 102 50.0
GSVIVG01037872001 Vitis vinifera HOM05D006153 ORTHO05D007701 1.0e-16 90.1 101 47.5
GSVIVG01037873001 Vitis vinifera HOM05D006153 ORTHO05D007701 5.2e-16 87.8 101 46.5
Potri.009G091100 Populus trichocarpa HOM05D006153 ORTHO05D007701 8.9e-16 87.0 65 63.1
Hma1.2p1_1174F.1_g263880 Hydrangea macrophylla HOM05D006153 ORTHO05D007701 2.6e-15 85.5 101 43.6
RcHm_v2.0_Chr6g0253971 Rosa chinensis HOM05D006153 ORTHO05D007701 3.4e-15 85.1 104 49.0
Manes.10G074900 Manihot esculenta HOM05D006153 ORTHO05D007701 4.4e-15 84.7 62 64.5
TWI23G0900 Tripterygium wilfordii HOM05D006153 ORTHO05D007701 5.8e-15 84.3 80 52.5
Actinidia27982 Actinidia chinensis HOM05D006153 ORTHO05D007701 7.5e-15 84.0 93 46.2
Haze_10299 Corylus avellana HOM05D006153 ORTHO05D007701 7.5e-15 84.0 82 50.0
Nitab4.5_0002017g0030 Nicotiana tabacum HOM05D006153 ORTHO05D007701 7.5e-15 84.0 58 56.9
Nitab4.5_0012681g0010 Nicotiana tabacum HOM05D006153 ORTHO05D007701 7.5e-15 84.0 73 50.7
Nn5g30510 Nelumbo nucifera HOM05D006153 ORTHO05D007701 9.8e-15 83.6 95 42.1
EL10Ac8g19360 Beta vulgaris HOM05D006153 ORTHO05D007701 1.3e-14 83.2 57 59.6
FAN15G1936 Fragaria x ananassa HOM05D006153 ORTHO05D007701 1.7e-14 82.8 102 50.0
Sabra09G0070400 Salix brachista HOM05D006153 ORTHO05D007701 2.9e-14 82.0 101 45.5
Oeu013772.1 Olea europaea HOM05D006153 ORTHO05D007701 3.7e-14 81.6 49 59.2
Haze_10254 Corylus avellana HOM05D006153 ORTHO05D007701 4.9e-14 81.3 96 50.0
Peaxi162Scf00003g00261 Petunia axillaris HOM05D006153 ORTHO05D007701 4.9e-14 81.3 98 43.9
Prupe.8G140400 Prunus persica HOM05D006153 ORTHO05D007701 4.9e-14 81.3 102 47.1
Sed0025917 Sechium edule HOM05D006153 ORTHO05D007701 6.4e-14 80.9 47 66.0
MD10G1102200 Malus domestica HOM05D006153 ORTHO05D007701 1.1e-13 80.1 113 40.7
Peaxi162Scf00152g00320 Petunia axillaris HOM05D006153 ORTHO05D007701 1.4e-13 79.7 84 45.2
Sc14g0002580 Simmondsia chinensis HOM05D006153 ORTHO05D007701 1.4e-13 79.7 97 40.2
MELO3C018509.2 Cucumis melo HOM05D006153 ORTHO05D007701 1.8e-13 79.3 50 60.0
Eucgr.G00438 Eucalyptus grandis HOM05D006153 ORTHO05D007701 1.8e-13 79.3 85 48.2
HanXRQChr16g0514461 Helianthus annuus HOM05D006153 ORTHO05D007701 1.8e-13 79.3 46 67.4
HanXRQChr16g0514451 Helianthus annuus HOM05D006153 ORTHO05D007701 3.2e-13 78.6 47 63.8
HanXRQChr16g0514901 Helianthus annuus HOM05D006153 ORTHO05D007701 3.2e-13 78.6 46 65.2
Cfa004655 Carpinus fangiana HOM05D006153 ORTHO05D007701 4.1e-13 78.2 85 51.8
MD05G1096000 Malus domestica HOM05D006153 ORTHO05D007701 5.4e-13 77.8 41 75.6
CANSAT25G0942 Cannabis sativa HOM05D006153 ORTHO05D007701 9.2e-13 77.0 146 35.6
Peaxi162Scf00016g00267 Petunia axillaris HOM05D006153 ORTHO05D007701 9.2e-13 77.0 44 70.5
PSO541G5112 Papaver somniferum HOM05D006153 ORTHO05D007701 1.2e-12 76.6 44 65.9
Hund06709 Selenicereus undatus HOM05D006153 ORTHO05D007701 1.2e-12 76.6 44 68.2
A01p35140 Brassica napus HOM05D006153 ORTHO05D007701 2.7e-12 75.5 53 58.5
Nitab4.5_0001105g0220 Nicotiana tabacum HOM05D006153 ORTHO05D007701 2.7e-12 75.5 47 66.0
Nitab4.5_0004685g0060 Nicotiana tabacum HOM05D006153 ORTHO05D007701 2.7e-12 75.5 47 66.0
TPR.G8325 Trifolium pratense HOM05D006153 ORTHO05D007701 2.7e-12 75.5 97 43.3
ATR0030G019 Amborella trichopoda HOM05D006153 ORTHO05D007701 3.5e-12 75.1 46 58.7
AL3G32960 Arabidopsis lyrata HOM05D006153 ORTHO05D007701 3.5e-12 75.1 53 60.4
ClCG02G006680 Citrullus lanatus HOM05D006153 ORTHO05D007701 3.5e-12 75.1 91 40.7
HanXRQChr16g0514921 Helianthus annuus HOM05D006153 ORTHO05D007701 3.5e-12 75.1 43 67.4
Aa31LG8G6290 Aethionema arabicum HOM05D006153 ORTHO05D007701 4.6e-12 74.7 55 56.4
ECA234G4313 Erigeron canadensis HOM05D006153 ORTHO05D007701 4.6e-12 74.7 43 62.8
Medtr5g005180 Medicago truncatula HOM05D006153 ORTHO05D007701 4.6e-12 74.7 40 70.0
BcaB06g26014 Brassica carinata HOM05D006153 ORTHO05D007701 7.8e-12 73.9 44 63.6
Carub.0003s1938 Capsella rubella HOM05D006153 ORTHO05D007701 7.8e-12 73.9 100 42.0
Ca_24350_v3 Cicer arietinum L. HOM05D006153 ORTHO05D007701 7.8e-12 73.9 97 45.4
CsaV3_7G007950 Cucumis sativus L. HOM05D006153 ORTHO05D007701 7.8e-12 73.9 76 43.4
Lsat_1_v5_gn_5_114460 Lactuca sativa HOM05D006153 ORTHO05D007701 7.8e-12 73.9 44 61.4
BcaC05g28465 Brassica carinata HOM05D006153 ORTHO05D007701 1.0e-11 73.6 107 43.0
Solyc01g107280.3 Solanum lycopersicum HOM05D006153 ORTHO05D007701 1.0e-11 73.6 100 43.0
DCAR_001674 Daucus carota HOM05D006153 ORTHO05D007701 1.3e-11 73.2 54 61.1
BraA01t03596Z Brassica rapa HOM05D006153 ORTHO05D007701 1.7e-11 72.8 103 41.7
Gohir.A13G045400 Gossypium hirsutum HOM05D006153 ORTHO05D007701 1.7e-11 72.8 90 44.4
AT3G19550 Arabidopsis thaliana HOM05D006153 ORTHO05D007701 2.3e-11 72.4 102 41.2
DCAR_001679 Daucus carota HOM05D006153 ORTHO05D007701 2.3e-11 72.4 106 45.3
C05p45510 Brassica napus HOM05D006153 ORTHO05D007701 3.0e-11 72.0 107 42.1
BolC5t33274H Brassica oleracea HOM05D006153 ORTHO05D007701 3.0e-11 72.0 107 42.1
A05p30090 Brassica napus HOM05D006153 ORTHO05D007701 3.9e-11 71.6 107 42.1
BraA05t21849Z Brassica rapa HOM05D006153 ORTHO05D007701 3.9e-11 71.6 107 42.1
DCAR_003609 Daucus carota HOM05D006153 ORTHO05D007701 3.9e-11 71.6 49 63.3
HanXRQChr13g0425861 Helianthus annuus HOM05D006153 ORTHO05D007701 3.9e-11 71.6 46 58.7
Sopen01g049530 Solanum pennellii HOM05D006153 ORTHO05D007701 3.9e-11 71.6 73 46.6
Migut.I00275 Erythranthe guttata HOM05D006153 ORTHO05D007701 5.0e-11 71.2 43 60.5
Thhalv10021914m.g Eutrema salsugineum HOM05D006153 ORTHO05D007701 5.0e-11 71.2 110 41.8
SGA_v2.0_scaffold624G53237 Striga asiatica HOM05D006153 ORTHO05D007701 5.0e-11 71.2 85 42.4
Aqoxy6G02752 Aquilegia oxysepala HOM05D006153 ORTHO05D007701 6.6e-11 70.9 87 43.7
BcaB04g20696 Brassica carinata HOM05D006153 ORTHO05D007701 6.6e-11 70.9 103 38.8
Os12g0507700 Oryza sativa ssp. japonica HOM05D006153 ORTHO05D007701 6.6e-11 70.9 77 42.9
Sp3g17600 Schrenkiella parvula HOM05D006153 ORTHO05D007701 6.6e-11 70.9 103 41.7
MBI16_g15146_MAGBIO Magnolia biondii HOM05D006153 ORTHO05D007701 1.1e-10 70.1 46 56.5
Zm00001eb138020 Zea mays HOM05D006153 ORTHO05D007701 1.1e-10 70.1 39 64.1
Psat4g228040 Pisum sativum HOM05D006153 ORTHO05D007701 1.9e-10 69.3 99 41.4
Zm00001eb264740 Zea mays HOM05D006153 ORTHO05D007701 1.9e-10 69.3 43 58.1
A01p35130 Brassica napus HOM05D006153 ORTHO05D007701 2.5e-10 68.9 110 40.9
BraA01t03595Z Brassica rapa HOM05D006153 ORTHO05D007701 2.5e-10 68.9 110 40.9
CARHR094970 Cardamine hirsuta HOM05D006153 ORTHO05D007701 2.5e-10 68.9 105 39.0
AUR62027357 Chenopodium quinoa HOM05D006153 ORTHO05D007701 2.5e-10 68.9 82 39.0
Rhsim05G0089900 Rhododendron simsii HOM05D006153 ORTHO05D007701 2.5e-10 68.9 54 51.9
BcaB04g20697 Brassica carinata HOM05D006153 ORTHO05D007701 3.3e-10 68.6 105 40.0
BcaC09g48920 Brassica carinata HOM05D006153 ORTHO05D007701 3.3e-10 68.6 108 39.8
C01p44580 Brassica napus HOM05D006153 ORTHO05D007701 3.3e-10 68.6 108 39.8
BolC1t04422H Brassica oleracea HOM05D006153 ORTHO05D007701 7.3e-10 67.4 108 39.8
AUR62031329 Chenopodium quinoa HOM05D006153 ORTHO05D007701 7.3e-10 67.4 43 55.8
PGSC0003DMG400025850 Solanum tuberosum HOM05D006153 ORTHO05D007701 1.2e-09 66.6 44 59.1
TAR383G0592 Trochodendron aralioides HOM05D008232 ORTHO05D010390 3.6e-09 65.1 47 51.1
Thhalv10021904m.g Eutrema salsugineum HOM05D006153 ORTHO05D007701 4.7e-09 64.7 44 56.8
Ciclev10029838m.g Citrus clementina HOM05D006153 ORTHO05D007701 8.0e-09 63.9 110 40.9
ECA234G3366 Erigeron canadensis HOM05D006153 ORTHO05D007701 1.1e-08 63.5 41 58.5
Thecc.06G043900 Theobroma cacao HOM05D000051 ORTHO05D000015 5.2e-08 61.2 46 56.5
Duzib235G0354 Durio zibethinus HOM05D008232 ORTHO05D010390 6.8e-08 60.8 48 50.0
Eucgr.G01281 Eucalyptus grandis HOM05D006153 ORTHO05D007701 1.5e-07 59.7 85 38.8
Gohir.A05G117900 Gossypium hirsutum HOM05D008232 ORTHO05D010390 2.0e-07 59.3 59 44.1
Ciclev10026814m.g Citrus clementina HOM05D008232 ORTHO05D010390 3.4e-07 58.5 48 47.9
Cpa.g.sc2471.1 Carica papaya HOM05D008232 ORTHO05D010390 9.8e-07 57.0 64 40.6
Gohir.D05G118800 Gossypium hirsutum HOM05D008232 ORTHO05D010390 1.3e-06 56.6 57 43.9
Gorai.009G122800 Gossypium raimondii HOM05D008232 ORTHO05D010390 1.7e-06 56.2 57 43.9
COL.COLO4_26749 Corchorus olitorius HOM05D008232 ORTHO05D010390 2.9e-06 55.5 46 50.0
Prupe.3G107800 Prunus persica HOM05D008232 ORTHO05D010390 3.7e-06 55.1 41 51.2


User provided reference genes

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