Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G257200 Glycine max HOM05D007107 ORTHO05D009198 6.7e-54 213.8 109 100.0
Glyma.20G134000 Glycine max HOM05D007107 ORTHO05D009198 1.2e-50 203.0 109 94.5
Phvul.007G045200 Phaseolus vulgaris HOM05D007107 ORTHO05D009198 2.5e-32 142.1 113 72.6
Medtr1g106215 Medicago truncatula HOM05D007107 ORTHO05D009198 3.2e-32 141.7 114 68.4
TPR.G27135 Trifolium pratense HOM05D007107 ORTHO05D009198 3.2e-32 141.7 111 70.3
Lj5g0011883 Lotus japonicus HOM05D007107 ORTHO05D009198 1.6e-31 139.4 115 69.6
Ca_11033_v3 Cicer arietinum L. HOM05D007107 ORTHO05D009198 3.6e-31 138.3 114 68.4
Psat6g214960 Pisum sativum HOM05D007107 ORTHO05D009198 1.8e-30 136.0 110 69.1
Lalb_Chr06g0165131 Lupinus albus HOM05D007107 ORTHO05D009198 5.2e-30 134.4 107 67.3
Cfa004630 Carpinus fangiana HOM05D007107 ORTHO05D009198 4.9e-20 101.3 109 54.1
Haze_10225 Corylus avellana HOM05D007107 ORTHO05D009198 2.0e-18 95.9 86 62.8
COL.COLO4_32518 Corchorus olitorius HOM05D007107 ORTHO05D009198 1.3e-17 93.2 112 53.6
Manes.07G058800 Manihot esculenta HOM05D007107 ORTHO05D009198 2.3e-17 92.4 104 52.9
Ciclev10029615m.g Citrus clementina HOM05D007107 ORTHO05D009198 2.5e-16 89.0 118 47.5
Oeu009671.1 Olea europaea HOM05D007107 ORTHO05D009198 3.3e-16 88.6 74 64.9
Nitab4.5_0001105g0070 Nicotiana tabacum HOM05D007107 ORTHO05D009198 5.6e-16 87.8 114 49.1
Peaxi162Scf00016g02820 Petunia axillaris HOM05D007107 ORTHO05D009198 7.3e-16 87.4 67 65.7
Duzib248G0083 Durio zibethinus HOM05D007107 ORTHO05D009198 9.5e-16 87.0 81 63.0
Nitab4.5_0008075g0020 Nicotiana tabacum HOM05D007107 ORTHO05D009198 9.5e-16 87.0 66 66.7
QL11p022494 Quercus lobata HOM05D007107 ORTHO05D009198 9.5e-16 87.0 69 66.7
CiPaw.05G017500 Carya illinoinensis HOM05D007107 ORTHO05D009198 2.1e-15 85.9 73 69.9
Oeu010443.1 Olea europaea HOM05D007107 ORTHO05D009198 2.1e-15 85.9 67 67.2
Prupe.8G144000 Prunus persica HOM05D007107 ORTHO05D009198 2.8e-15 85.5 70 65.7
Duzib132G0703 Durio zibethinus HOM05D007107 ORTHO05D009198 4.7e-15 84.7 74 66.2
Duzib248G0453 Durio zibethinus HOM05D000446 ORTHO05D000321 4.7e-15 84.7 81 61.7
Sopen01g049360 Solanum pennellii HOM05D007107 ORTHO05D009198 4.7e-15 84.7 122 46.7
PGR042G2158 Punica granatum HOM05D007107 ORTHO05D009198 8.0e-15 84.0 118 47.5
Solyc01g107090.2 Solanum lycopersicum HOM05D007107 ORTHO05D009198 1.0e-14 83.6 109 47.7
CSS0046981 Camellia sinensis var. sinensis HOM05D007107 ORTHO05D009198 1.4e-14 83.2 109 49.5
Thecc.02G116600 Theobroma cacao HOM05D007107 ORTHO05D009198 1.8e-14 82.8 81 59.3
Hma1.2p1_1773F.1_g301790 Hydrangea macrophylla HOM05D007107 ORTHO05D009198 2.3e-14 82.4 74 59.5
Atru.chr5.2359 Acer truncatum HOM05D007107 ORTHO05D009198 6.8e-14 80.9 73 61.6
Ah.09g231830 Amaranthus hybridus HOM05D007107 ORTHO05D009198 6.8e-14 80.9 76 60.5
TAR628G1630 Trochodendron aralioides HOM05D007107 ORTHO05D009198 1.5e-13 79.7 71 62.0
MD10G1105100 Malus domestica HOM05D007107 ORTHO05D009198 2.0e-13 79.3 62 71.0
Solyc01g107100.3 Solanum lycopersicum HOM05D007107 ORTHO05D009198 2.0e-13 79.3 113 46.9
CsaV3_4G000330 Cucumis sativus L. HOM05D007107 ORTHO05D009198 4.4e-13 78.2 67 65.7
Sopen01g049370 Solanum pennellii HOM05D007107 ORTHO05D009198 4.4e-13 78.2 113 45.1
Gohir.A13G046600 Gossypium hirsutum HOM05D007107 ORTHO05D009198 7.5e-13 77.4 74 63.5
Potri.001G294800 Populus trichocarpa HOM05D007107 ORTHO05D009198 9.8e-13 77.0 91 51.6
MELO3C018001.2 Cucumis melo HOM05D007107 ORTHO05D009198 1.3e-12 76.6 67 64.2
Cpa.g.sc106.53 Carica papaya HOM05D007107 ORTHO05D009198 1.7e-12 76.3 81 54.3
Aqoxy5G00877 Aquilegia oxysepala HOM05D007107 ORTHO05D009198 2.9e-12 75.5 73 57.5
FAN15G2005 Fragaria x ananassa HOM05D007107 ORTHO05D025431 3.7e-12 75.1 78 55.1
Gohir.D12G020100 Gossypium hirsutum HOM05D007107 ORTHO05D009198 3.7e-12 75.1 71 66.2
Gorai.008G020500 Gossypium raimondii HOM05D007107 ORTHO05D009198 3.7e-12 75.1 71 66.2
Lsat_1_v5_gn_9_111721 Lactuca sativa HOM05D007107 ORTHO05D009198 3.7e-12 75.1 70 61.4
TAR376G0510 Trochodendron aralioides HOM05D007107 ORTHO05D009198 3.7e-12 75.1 67 62.7
Gohir.D13G042600 Gossypium hirsutum HOM05D007107 ORTHO05D009198 6.4e-12 74.3 74 62.2
Gorai.013G050500 Gossypium raimondii HOM05D007107 ORTHO05D009198 6.4e-12 74.3 74 62.2
Gohir.A12G019900 Gossypium hirsutum HOM05D007107 ORTHO05D009198 1.9e-11 72.8 71 64.8
RcHm_v2.0_Chr6g0253681 Rosa chinensis HOM05D007107 ORTHO05D009198 2.4e-11 72.4 70 61.4
ClCG10G010430 Citrullus lanatus HOM05D007107 ORTHO05D009198 3.2e-11 72.0 68 64.7
Migut.B00446 Erythranthe guttata HOM05D007107 ORTHO05D009198 4.1e-11 71.6 59 67.8
PGSC0003DMG400042480 Solanum tuberosum HOM05D007107 ORTHO05D009198 9.2e-11 70.5 66 59.1
RcHm_v2.0_Chr6g0253721 Rosa chinensis HOM05D007107 ORTHO05D009198 1.2e-10 70.1 71 60.6
Sed0023372 Sechium edule HOM05D007107 ORTHO05D009198 2.0e-10 69.3 67 61.2
Cc02_g19820 Coffea canephora HOM05D007107 ORTHO05D009198 2.7e-10 68.9 112 43.8
FAN20G1224 Fragaria x ananassa HOM05D007107 ORTHO05D009198 2.7e-10 68.9 62 59.7
Lalb_Chr02g0144981 Lupinus albus HOM05D007107 ORTHO05D009198 3.5e-10 68.6 88 50.0
FvH4_2g04290 Fragaria vesca HOM05D007107 ORTHO05D009198 6.0e-10 67.8 78 51.3
FAN24G0068 Fragaria x ananassa HOM05D007107 ORTHO05D009198 6.0e-10 67.8 78 51.3
Rhsim11G0151000 Rhododendron simsii HOM05D007107 ORTHO05D009198 6.0e-10 67.8 72 56.9
Sed0004586 Sechium edule HOM05D007107 ORTHO05D009198 1.0e-09 67.0 67 59.7
Sc08g0004510 Simmondsia chinensis HOM05D007107 ORTHO05D009198 1.3e-09 66.6 72 55.6
CSS0000313 Camellia sinensis var. sinensis HOM05D007107 ORTHO05D009198 1.7e-09 66.2 96 43.8
Thhalv10021824m.g Eutrema salsugineum HOM05D007107 ORTHO05D009198 2.3e-09 65.9 64 62.5
CiPaw.06G165600 Carya illinoinensis HOM05D007107 ORTHO05D009198 3.0e-09 65.5 74 60.8
ECA234G2040 Erigeron canadensis HOM05D007107 ORTHO05D009198 3.9e-09 65.1 69 53.6
Rhsim11G0153200 Rhododendron simsii HOM05D007107 ORTHO05D009198 5.0e-09 64.7 72 55.6
Ah.14g085610 Amaranthus hybridus HOM05D007107 ORTHO05D009198 8.6e-09 63.9 62 58.1
AL3G33050 Arabidopsis lyrata HOM05D007107 ORTHO05D009198 8.6e-09 63.9 64 62.5
Oeu011135.1 Olea europaea HOM05D007107 ORTHO05D009198 8.6e-09 63.9 61 62.3
DCAR_001690 Daucus carota HOM05D007107 ORTHO05D009198 1.5e-08 63.2 55 65.5
Nn5g30571 Nelumbo nucifera HOM05D007107 ORTHO05D009198 1.5e-08 63.2 62 61.3
PGSC0003DMG400025747 Solanum tuberosum HOM05D007107 ORTHO05D009198 1.9e-08 62.8 56 62.5
EL10Ac8g19388 Beta vulgaris HOM05D007107 ORTHO05D009198 2.5e-08 62.4 109 41.3
CARHR095070 Cardamine hirsuta HOM05D007107 ORTHO05D009198 2.5e-08 62.4 64 59.4
Lsat_1_v5_gn_5_114201 Lactuca sativa HOM05D007107 ORTHO05D009198 2.5e-08 62.4 66 54.5
A03p41330 Brassica napus HOM05D007107 ORTHO05D009198 3.3e-08 62.0 64 60.9
BraA03t13287Z Brassica rapa HOM05D007107 ORTHO05D009198 3.3e-08 62.0 64 60.9
AT3G19615 Arabidopsis thaliana HOM05D007107 ORTHO05D009198 5.6e-08 61.2 63 61.9
BcaC09g48926 Brassica carinata HOM05D007107 ORTHO05D009198 5.6e-08 61.2 78 51.3
C01p44500 Brassica napus HOM05D007107 ORTHO05D009198 5.6e-08 61.2 78 51.3
BolC1t04415H Brassica oleracea HOM05D007107 ORTHO05D009198 5.6e-08 61.2 78 51.3
BcaC01g03614 Brassica carinata HOM05D007107 ORTHO05D009198 7.3e-08 60.8 64 59.4
C03p50490 Brassica napus HOM05D007107 ORTHO05D009198 7.3e-08 60.8 64 59.4
MBI16_g29126_MAGBIO Magnolia biondii HOM05D007107 ORTHO05D009198 7.3e-08 60.8 72 50.0
PGSC0003DMG400025844 Solanum tuberosum HOM05D007107 ORTHO05D009198 7.3e-08 60.8 101 41.6
Eucgr.G01220 Eucalyptus grandis HOM05D007107 ORTHO05D009198 3.6e-07 58.5 72 50.0
BcaB04g20690 Brassica carinata HOM05D007107 ORTHO05D009198 1.1e-06 57.0 64 57.8
A01p35080 Brassica napus HOM05D007107 ORTHO05D009198 1.1e-06 57.0 64 56.2
BolC3t17339H Brassica oleracea HOM05D007107 ORTHO05D009198 1.1e-06 57.0 63 54.0
BraA01t03589Z Brassica rapa HOM05D007107 ORTHO05D009198 1.1e-06 57.0 64 56.2
Carub.0003s1948 Capsella rubella HOM05D007107 ORTHO05D009198 1.8e-06 56.2 73 52.1
CANSAT25G2317 Cannabis sativa HOM05D007107 ORTHO05D009198 3.1e-06 55.5 69 52.2
Lalb_Chr25g0278741 Lupinus albus HOM05D007107 ORTHO05D009198 4.0e-06 55.1 54 59.3


User provided reference genes

Program Settings