Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G257100 Glycine max HOM05D006273 ORTHO05D007607 3.0e-154 548.5 289 100.0
Glyma.20G134100 Glycine max HOM05D006273 ORTHO05D007607 1.1e-130 470.3 298 86.2
VMungo0720G2467 Vigna mungo HOM05D006273 ORTHO05D007607 2.5e-108 396.0 307 76.5
Phvul.007G045300 Phaseolus vulgaris HOM05D006273 ORTHO05D007607 1.6e-107 393.3 321 74.8
Lj5g0005423 Lotus japonicus HOM05D006273 ORTHO05D007607 1.9e-92 343.2 334 63.8
arahy.Tifrunner.gnm1.ann1.71AIDN Arachis hypogaea HOM05D006273 ORTHO05D007607 1.4e-85 320.5 316 62.0
Medtr1g106210 Medicago truncatula HOM05D006273 ORTHO05D007607 4.8e-83 312.0 296 65.5
arahy.Tifrunner.gnm1.ann1.P501AI Arachis hypogaea HOM05D006273 ORTHO05D007607 5.3e-82 308.5 333 59.2
TPR.G27136 Trifolium pratense HOM05D006273 ORTHO05D007607 5.3e-82 308.5 303 63.0
Lalb_Chr06g0165121 Lupinus albus HOM05D006273 ORTHO05D007607 1.6e-78 297.0 304 61.2
Psat6g214920 Pisum sativum HOM05D006273 ORTHO05D007607 5.9e-73 278.5 217 72.8
Ca_11032_v3 Cicer arietinum L. HOM05D006273 ORTHO05D007607 2.2e-67 260.0 194 76.3
Phvul.002G051700 Phaseolus vulgaris HOM05D006273 ORTHO05D007607 2.5e-63 246.5 305 57.0
VMungo1215G3137 Vigna mungo HOM05D006273 ORTHO05D007607 2.9e-56 223.0 307 52.8
Lj1g0018578 Lotus japonicus HOM05D006273 ORTHO05D007607 9.1e-50 201.4 302 50.7
Cfa004628 Carpinus fangiana HOM05D006273 ORTHO05D007607 1.6e-49 200.7 323 48.0
Dinv42237 Davidia involucrata HOM05D006273 ORTHO05D007607 8.0e-46 188.3 323 45.8
Glyma.11G001800 Glycine max HOM05D006273 ORTHO05D007607 4.4e-44 182.6 295 50.5
Glyma.01G242500 Glycine max HOM05D006273 ORTHO05D007607 2.2e-43 180.3 295 51.9
CiPaw.05G017700 Carya illinoinensis HOM05D006273 ORTHO05D007607 8.3e-43 178.3 324 47.2
Haze_10223 Corylus avellana HOM05D006273 ORTHO05D007607 8.3e-43 178.3 308 46.4
Gohir.A12G019800 Gossypium hirsutum HOM05D006273 ORTHO05D007607 1.4e-42 177.6 331 44.4
Gohir.D12G020000 Gossypium hirsutum HOM05D006273 ORTHO05D007607 3.2e-42 176.4 331 44.1
Gorai.008G020400 Gossypium raimondii HOM05D006273 ORTHO05D007607 3.2e-42 176.4 331 44.1
QL11p030642 Quercus lobata HOM05D006273 ORTHO05D007607 7.0e-42 175.3 323 45.8
Manes.10G081700 Manihot esculenta HOM05D006273 ORTHO05D007607 1.6e-41 174.1 332 43.1
Duzib132G0234 Durio zibethinus HOM05D006273 ORTHO05D007607 2.7e-41 173.3 327 44.0
Hma1.2p1_1059F.1_g252960 Hydrangea macrophylla HOM05D006273 ORTHO05D007607 1.7e-40 170.6 327 42.5
Actinidia04385 Actinidia chinensis HOM05D002857 ORTHO05D007919 2.5e-39 166.8 328 42.1
Duzib248G0443 Durio zibethinus HOM05D006273 ORTHO05D007607 2.5e-39 166.8 333 42.3
Thecc.02G116800 Theobroma cacao HOM05D006273 ORTHO05D007607 7.3e-39 165.2 326 43.3
Potri.009G088600 Populus trichocarpa HOM05D006273 ORTHO05D007607 1.6e-38 164.1 324 41.7
Ciclev10028827m.g Citrus clementina HOM05D006273 ORTHO05D007607 6.1e-38 162.2 323 40.6
COL.COLO4_32516 Corchorus olitorius HOM05D006273 ORTHO05D007607 3.1e-37 159.8 318 43.1
MD05G1099900 Malus domestica HOM05D006273 ORTHO05D007607 5.8e-36 155.6 325 40.3
ClCG10G010280 Citrullus lanatus HOM05D006273 ORTHO05D007607 2.9e-35 153.3 329 39.5
Cpa.g.sc106.50 Carica papaya HOM05D006273 ORTHO05D007607 1.2e-33 147.9 328 40.2
Prupe.8G144600 Prunus persica HOM05D006273 ORTHO05D007607 1.2e-33 147.9 325 40.0
RcHm_v2.0_Chr6g0253781 Rosa chinensis HOM05D006273 ORTHO05D007607 6.0e-33 145.6 329 38.6
FAN24G1968 Fragaria x ananassa HOM05D006273 ORTHO05D007607 1.0e-32 144.8 328 40.9
FAN24G2779 Fragaria x ananassa HOM05D006273 ORTHO05D007607 1.0e-32 144.8 328 40.9
CsaV3_4G000230 Cucumis sativus L. HOM05D006273 ORTHO05D007607 3.0e-32 143.3 332 38.0
TWI23G0281 Tripterygium wilfordii HOM05D006273 ORTHO05D007607 5.0e-32 142.5 313 39.6
MELO3C018010.2 Cucumis melo HOM05D006273 ORTHO05D007607 1.5e-31 141.0 329 38.3
FAN20G1056 Fragaria x ananassa HOM05D006273 ORTHO05D007607 1.9e-31 140.6 316 39.2
Lj5A219G34 Lonicera japonica HOM05D006273 ORTHO05D007607 4.3e-31 139.4 346 39.9
FAN27G2995 Fragaria x ananassa HOM05D006273 ORTHO05D007607 1.2e-30 137.9 334 38.6
FAN15G3526 Fragaria x ananassa HOM05D006273 ORTHO05D007607 1.1e-29 134.8 334 39.2
Nitab4.5_0008075g0050 Nicotiana tabacum HOM05D006273 ORTHO05D007607 4.0e-29 132.9 335 38.5
FvH4_2g04340 Fragaria vesca HOM05D006273 ORTHO05D007607 6.8e-29 132.1 340 38.2
PGSC0003DMG400025745 Solanum tuberosum HOM05D006273 ORTHO05D007607 6.8e-29 132.1 335 38.2
PGR042G0373 Punica granatum HOM05D006273 ORTHO05D007607 2.0e-28 130.6 336 37.8
Nn5g30577 Nelumbo nucifera HOM05D006273 ORTHO05D007607 2.6e-28 130.2 331 37.5
vmacro19532 Vaccinium macrocarpon HOM05D006273 ORTHO05D007607 7.5e-28 128.6 200 46.0
GSVIVG01037839001 Vitis vinifera HOM05D006273 ORTHO05D007607 9.8e-28 128.3 344 37.2
Solyc01g107030.3 Solanum lycopersicum HOM05D006273 ORTHO05D007607 1.3e-27 127.9 325 38.2
Oeu010445.1 Olea europaea HOM05D006273 ORTHO05D007607 2.2e-27 127.1 306 39.2
Sopen01g049300 Solanum pennellii HOM05D006273 ORTHO05D007607 2.2e-27 127.1 328 38.1
Sed0011178 Sechium edule HOM05D006273 ORTHO05D007607 3.7e-27 126.3 333 36.3
Cc02_g19850 Coffea canephora HOM05D006273 ORTHO05D007607 4.9e-27 125.9 329 37.4
DCAR_001698 Daucus carota HOM05D006273 ORTHO05D007607 4.9e-27 125.9 333 35.7
Rhsim05G0090800 Rhododendron simsii HOM05D002857 ORTHO05D007919 3.2e-26 123.2 227 43.2
MSTRG.5316 Avicennia marina HOM05D006273 ORTHO05D007607 1.2e-25 121.3 336 37.2
Aqoxy6G02639 Aquilegia oxysepala HOM05D006273 ORTHO05D007607 1.6e-25 120.9 268 41.8
TAR628G0174 Trochodendron aralioides HOM05D006273 ORTHO05D007607 1.7e-24 117.5 321 37.1
CSS0011953 Camellia sinensis var. sinensis HOM05D002857 ORTHO05D007919 6.6e-24 115.5 309 36.2
TAR381G1192 Trochodendron aralioides HOM05D006273 ORTHO05D007607 8.6e-24 115.2 324 35.5
Sabra09G0068600 Salix brachista HOM05D006273 ORTHO05D007607 1.1e-23 114.8 378 34.1
CANSAT25G0612 Cannabis sativa HOM05D006273 ORTHO05D007607 1.9e-23 114.0 328 36.3
Potri.001G295000 Populus trichocarpa HOM05D006273 ORTHO05D007607 3.3e-23 113.2 148 47.3
CAN.G606.58 Capsicum annuum HOM05D006273 ORTHO05D007607 9.5e-23 111.7 310 36.5
SalBow3G1994 Salvia bowleyana HOM05D006273 ORTHO05D007607 1.1e-21 108.2 354 34.2
Migut.N01140 Erythranthe guttata HOM05D006273 ORTHO05D007607 2.3e-21 107.1 288 36.1
Peaxi162Scf00016g02848 Petunia axillaris HOM05D006273 ORTHO05D007607 2.0e-20 104.0 310 34.8
PSO541G6083 Papaver somniferum HOM05D006273 ORTHO05D007607 3.4e-20 103.2 326 35.9
HanXRQChr10g0292221 Helianthus annuus HOM05D006273 ORTHO05D007607 9.9e-20 101.7 323 35.9
Nitab4.5_0001105g0020 Nicotiana tabacum HOM05D006273 ORTHO05D007607 6.4e-19 99.0 174 43.7
Sc18g0007420 Simmondsia chinensis HOM05D006273 ORTHO05D007607 8.3e-19 98.6 328 33.8
EL10Ac9g22769 Beta vulgaris HOM05D006273 ORTHO05D007607 1.4e-18 97.8 223 36.3
Hund24173 Selenicereus undatus HOM05D006273 ORTHO05D007607 3.2e-18 96.7 305 34.4
TPR.G8308 Trifolium pratense HOM05D006273 ORTHO05D007607 2.3e-16 90.5 223 40.8
ATR1153G071 Amborella trichopoda HOM05D006273 ORTHO05D007607 3.0e-16 90.1 329 31.9
unitig_21.g20718 Utricularia gibba HOM05D002857 ORTHO05D007919 5.1e-16 89.4 310 31.9
TWI59G0086 Tripterygium wilfordii HOM05D006273 ORTHO05D007607 6.6e-16 89.0 148 43.2
PSO675G1322 Papaver somniferum HOM05D006273 ORTHO05D007607 1.5e-15 87.8 331 32.6
Sc18g0007460 Simmondsia chinensis HOM05D006273 ORTHO05D007607 3.3e-15 86.7 328 33.2
Thhalv10021227m.g Eutrema salsugineum HOM05D006273 ORTHO05D007607 9.6e-15 85.1 310 33.9
Hund24138 Selenicereus undatus HOM05D006273 ORTHO05D007607 9.6e-15 85.1 182 39.6
Lsat_1_v5_gn_5_114180 Lactuca sativa HOM05D006273 ORTHO05D007607 4.7e-14 82.8 313 34.8
BcaC05g28438 Brassica carinata HOM05D006273 ORTHO05D007607 6.8e-13 79.0 294 35.4
AUR62017546 Chenopodium quinoa HOM05D006273 ORTHO05D007607 2.0e-12 77.4 159 35.8
Eucgr.G01219 Eucalyptus grandis HOM05D006273 ORTHO05D007607 2.6e-12 77.0 267 36.7
CARHR095110 Cardamine hirsuta HOM05D006273 ORTHO05D007607 7.6e-12 75.5 315 34.3
THA.LOC104815220 Tarenaya hassleriana HOM05D006273 ORTHO05D007607 7.6e-12 75.5 312 33.3
Nn1g04569 Nelumbo nucifera HOM05D006273 ORTHO05D007607 1.3e-11 74.7 331 32.3
C05p45180 Brassica napus HOM05D006273 ORTHO05D007607 1.7e-11 74.3 307 35.2
CDE02G4649 Ceratophyllum demersum HOM05D006273 ORTHO05D007607 2.2e-11 73.9 229 33.2
ECA234G1150 Erigeron canadensis HOM05D006273 ORTHO05D007607 2.9e-11 73.6 327 34.3
SGA_v2.0_scaffold225G43040 Striga asiatica HOM05D006273 ORTHO05D007607 3.8e-11 73.2 304 33.6
Sp3g17690 Schrenkiella parvula HOM05D006273 ORTHO05D007607 4.9e-11 72.8 320 32.2
AUR62044228 Chenopodium quinoa HOM05D006273 ORTHO05D007607 6.4e-11 72.4 191 35.1
Zm00001eb007690 Zea mays HOM05D006273 ORTHO05D007607 1.1e-10 71.6 326 28.8
HPP92_007764 Vanilla planifolia HOM05D006273 ORTHO05D007607 1.4e-10 71.2 340 33.2
BcaB06g26035 Brassica carinata HOM05D006273 ORTHO05D007607 2.4e-10 70.5 304 33.2
Psat4g227520 Pisum sativum HOM05D006273 ORTHO05D007607 4.2e-10 69.7 203 39.9
Ah.01g002130 Amaranthus hybridus HOM05D006273 ORTHO05D007607 7.1e-10 68.9 285 29.8
Medtr5g005040 Medicago truncatula HOM05D006273 ORTHO05D007607 1.6e-09 67.8 119 45.4
BolC5t33244H Brassica oleracea HOM05D000470 ORTHO05D000348 3.5e-09 66.6 307 31.9
AUR62025214 Chenopodium quinoa HOM05D000052 ORTHO05D007607 6.0e-09 65.9 50 58.0
Carub.0003s1952 Capsella rubella HOM05D006273 ORTHO05D007607 1.0e-08 65.1 312 32.7
AT3G19650 Arabidopsis thaliana HOM05D006273 ORTHO05D007607 1.6e-06 57.8 308 30.8


User provided reference genes

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