Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G255200 Glycine max HOM05D005311 ORTHO05D006160 3.8e-117 424.9 218 100.0
Phvul.007G047500 Phaseolus vulgaris HOM05D005311 ORTHO05D006160 1.0e-106 390.2 218 92.7
Glyma.20G136100 Glycine max HOM05D005311 ORTHO05D006160 7.5e-105 384.0 218 91.7
Ca_11020_v3 Cicer arietinum L. HOM05D005311 ORTHO05D006160 8.3e-88 327.4 222 80.6
Medtr1g105970 Medicago truncatula HOM05D005311 ORTHO05D006160 1.1e-84 317.0 220 78.6
Lj5g0014269 Lotus japonicus HOM05D005311 ORTHO05D006160 1.5e-84 316.6 219 77.2
Lalb_Chr21g0307981 Lupinus albus HOM05D005311 ORTHO05D006160 7.3e-84 314.3 216 77.3
arahy.Tifrunner.gnm1.ann1.KVB0K0 Arachis hypogaea HOM05D005311 ORTHO05D006160 8.1e-83 310.8 227 74.9
Lalb_Chr02g0144871 Lupinus albus HOM05D005311 ORTHO05D006160 1.4e-82 310.1 216 77.8
VMungo0720G0066 Vigna mungo HOM05D005311 ORTHO05D006160 8.6e-77 290.8 154 95.5
Lalb_Chr16g0376301 Lupinus albus HOM05D005311 ORTHO05D006160 9.3e-71 270.8 218 68.3
arahy.Tifrunner.gnm1.ann1.QK2693 Arachis hypogaea HOM05D005311 ORTHO05D006160 4.3e-68 261.9 155 85.2
GSVIVG01037044001 Vitis vinifera HOM05D005311 ORTHO05D006160 2.0e-65 253.1 227 65.6
CiPaw.05G021200 Carya illinoinensis HOM05D005311 ORTHO05D006160 1.9e-63 246.5 218 61.9
Potri.009G084800 Populus trichocarpa HOM05D005311 ORTHO05D006160 1.9e-63 246.5 223 61.9
CSS0009611 Camellia sinensis var. sinensis HOM05D005311 ORTHO05D006160 3.2e-63 245.7 219 63.5
COL.COLO4_32478 Corchorus olitorius HOM05D005311 ORTHO05D006160 7.1e-63 244.6 216 61.6
Duzib052G0370 Durio zibethinus HOM05D005311 ORTHO05D006160 7.1e-63 244.6 216 63.4
Manes.07G056400 Manihot esculenta HOM05D005311 ORTHO05D006160 2.1e-62 243.0 227 61.7
Atru.chr5.2262 Acer truncatum HOM05D005311 ORTHO05D006160 7.9e-62 241.1 214 61.7
Thecc.02G120600 Theobroma cacao HOM05D005311 ORTHO05D006160 7.9e-62 241.1 215 60.0
Gohir.A03G180600 Gossypium hirsutum HOM05D005311 ORTHO05D006160 3.0e-61 239.2 215 60.0
Ciclev10029272m.g Citrus clementina HOM05D005311 ORTHO05D006160 8.7e-61 237.7 214 62.1
Gohir.D02G203104 Gossypium hirsutum HOM05D005311 ORTHO05D006160 1.1e-60 237.3 215 59.5
Nn6g32054 Nelumbo nucifera HOM05D005311 ORTHO05D006160 1.5e-60 236.9 154 76.6
MD05G1106900 Malus domestica HOM05D005311 ORTHO05D006160 3.3e-60 235.7 219 59.4
Gorai.005G229500 Gossypium raimondii HOM05D005311 ORTHO05D006160 7.4e-60 234.6 215 58.6
MD10G1111900 Malus domestica HOM05D005311 ORTHO05D006160 7.4e-60 234.6 219 59.8
TAR376G1236 Trochodendron aralioides HOM05D000442 ORTHO05D006160 7.4e-60 234.6 201 63.2
TWI14G0308 Tripterygium wilfordii HOM05D005311 ORTHO05D006160 1.6e-59 233.4 227 58.6
Rhsim11G0150000 Rhododendron simsii HOM05D005311 ORTHO05D006160 2.1e-59 233.0 225 60.4
TAR628G1269 Trochodendron aralioides HOM05D005311 ORTHO05D006160 2.8e-59 232.6 188 65.4
Aqoxy5G01939 Aquilegia oxysepala HOM05D005311 ORTHO05D006160 4.8e-59 231.9 224 58.5
Potri.001G289400 Populus trichocarpa HOM05D005311 ORTHO05D006160 6.2e-59 231.5 223 60.1
Gohir.D12G019000 Gossypium hirsutum HOM05D005311 ORTHO05D006160 1.1e-58 230.7 215 57.7
Gorai.008G019300 Gossypium raimondii HOM05D005311 ORTHO05D006160 1.1e-58 230.7 215 57.7
QL11p029204 Quercus lobata HOM05D005311 ORTHO05D006160 1.4e-58 230.3 236 56.4
Gohir.A12G018400 Gossypium hirsutum HOM05D005311 ORTHO05D006160 2.4e-58 229.6 215 58.1
TWI59G0049 Tripterygium wilfordii HOM05D005311 ORTHO05D006160 3.1e-58 229.2 216 60.2
TAR625G0307 Trochodendron aralioides HOM05D005311 ORTHO05D006160 5.3e-58 228.4 188 64.9
FvH4_2g03130 Fragaria vesca HOM05D005311 ORTHO05D006160 6.9e-58 228.0 226 57.5
CANSAT25G3378 Cannabis sativa HOM05D005311 ORTHO05D006160 5.8e-57 224.9 220 57.3
Sed0009957 Sechium edule HOM05D005311 ORTHO05D006160 5.8e-57 224.9 221 58.4
MELO3C018026.2 Cucumis melo HOM05D005311 ORTHO05D006160 7.6e-57 224.6 217 59.4
Lsat_1_v5_gn_9_113920 Lactuca sativa HOM05D005311 ORTHO05D006160 4.9e-56 221.9 216 60.6
FAN24G0492 Fragaria x ananassa HOM05D005311 ORTHO05D006160 1.1e-55 220.7 230 56.1
Sopen01g049100 Solanum pennellii HOM05D005311 ORTHO05D006160 1.9e-55 219.9 220 58.2
Cc02_g20120 Coffea canephora HOM05D005311 ORTHO05D006160 2.4e-55 219.5 225 56.9
FAN20G1889 Fragaria x ananassa HOM05D005311 ORTHO05D006160 3.2e-55 219.2 230 55.7
Actinidia00352 Actinidia chinensis HOM05D005311 ORTHO05D006160 4.2e-55 218.8 221 55.7
Psat6g210680 Pisum sativum HOM05D005311 ORTHO05D006160 4.2e-55 218.8 140 82.1
FAN27G0024 Fragaria x ananassa HOM05D005311 ORTHO05D006160 7.1e-55 218.0 230 55.2
Eucgr.I02500 Eucalyptus grandis HOM05D005311 ORTHO05D006160 1.2e-54 217.2 161 73.3
PGSC0003DMG400025735 Solanum tuberosum HOM05D005311 ORTHO05D006160 1.2e-54 217.2 220 57.7
Solyc01g106790.3 Solanum lycopersicum HOM05D005311 ORTHO05D006160 2.1e-54 216.5 221 57.9
Cpa.g.sc106.28 Carica papaya HOM05D005311 ORTHO05D006160 4.6e-54 215.3 269 50.2
RcHm_v2.0_Chr6g0248001 Rosa chinensis HOM05D005311 ORTHO05D006160 1.0e-53 214.2 250 51.6
Nitab4.5_0000772g0050 Nicotiana tabacum HOM05D005311 ORTHO05D006160 1.8e-53 213.4 221 58.4
TPR.G21150 Trifolium pratense HOM05D005311 ORTHO05D006160 3.0e-53 212.6 148 76.4
ECA240G0703 Erigeron canadensis HOM05D005311 ORTHO05D006160 3.9e-53 212.2 220 56.8
ClCG10G010010 Citrullus lanatus HOM05D005311 ORTHO05D006160 5.1e-53 211.8 157 72.6
vmacro01940 Vaccinium macrocarpon HOM05D000211 ORTHO05D002517 6.7e-53 211.5 181 63.5
CAN.G606.76 Capsicum annuum HOM05D005311 ORTHO05D006160 1.5e-52 210.3 225 54.2
Sabra16G0181000 Salix brachista HOM05D002370 ORTHO05D003878 1.5e-52 210.3 154 68.2
FAN15G1540 Fragaria x ananassa HOM05D005311 ORTHO05D006160 5.6e-52 208.4 222 55.0
Nitab4.5_0009103g0020 Nicotiana tabacum HOM05D005311 ORTHO05D006160 5.6e-52 208.4 221 57.5
Actinidia02445 Actinidia chinensis HOM05D005311 ORTHO05D006160 7.4e-52 208.0 223 54.3
Lj9A337G44 Lonicera japonica HOM05D005311 ORTHO05D006160 7.4e-52 208.0 155 69.7
Actinidia28002 Actinidia chinensis HOM05D004628 ORTHO05D006160 3.7e-51 205.7 224 54.9
Lsat_1_v5_gn_7_84560 Lactuca sativa HOM05D005311 ORTHO05D006160 6.2e-51 204.9 219 53.0
Peaxi162Scf00016g03127 Petunia axillaris HOM05D005311 ORTHO05D006160 1.1e-50 204.1 224 54.5
HanXRQChr15g0495651 Helianthus annuus HOM05D005311 ORTHO05D006160 1.8e-50 203.4 216 55.6
THA.LOC104815219 Tarenaya hassleriana HOM05D005311 ORTHO05D006160 2.4e-50 203.0 167 66.5
ATR0767G087 Amborella trichopoda HOM05D005311 ORTHO05D006160 6.9e-50 201.4 207 54.6
CsaV3_4G000050 Cucumis sativus L. HOM05D005311 ORTHO05D006160 1.2e-49 200.7 168 66.7
MSTRG.16668 Avicennia marina HOM05D005311 ORTHO05D006160 2.6e-49 199.5 172 64.0
Sc18g0007330 Simmondsia chinensis HOM05D005311 ORTHO05D006160 2.6e-49 199.5 168 63.1
SGA_v2.0_scaffold32G12981 Striga asiatica HOM05D005311 ORTHO05D006160 4.5e-49 198.7 188 58.0
SalBow6G1857 Salvia bowleyana HOM05D005311 ORTHO05D006160 7.6e-49 198.0 171 62.0
Hund00418 Selenicereus undatus HOM05D005311 ORTHO05D006160 7.6e-49 198.0 168 62.5
ECA236G2995 Erigeron canadensis HOM05D000211 ORTHO05D002517 1.0e-48 197.6 178 60.7
AL1G57590 Arabidopsis lyrata HOM05D005311 ORTHO05D006160 2.9e-48 196.1 168 61.9
CARHR040130 Cardamine hirsuta HOM05D005311 ORTHO05D006160 4.9e-48 195.3 168 62.5
Migut.B00474 Erythranthe guttata HOM05D005311 ORTHO05D006160 4.9e-48 195.3 176 59.1
AT1G50020 Arabidopsis thaliana HOM05D005311 ORTHO05D006160 6.5e-48 194.9 188 58.0
Thhalv10011774m.g Eutrema salsugineum HOM05D005311 ORTHO05D006160 8.4e-48 194.5 168 62.5
arahy.Tifrunner.gnm1.ann1.YXS8EF Arachis hypogaea HOM05D005311 ORTHO05D006160 1.1e-47 194.1 145 71.7
Carub.0001s3920 Capsella rubella HOM05D005311 ORTHO05D006160 1.1e-47 194.1 170 61.8
DCAR_021939 Daucus carota HOM05D005311 ORTHO05D006160 1.9e-47 193.4 154 66.9
Sp1g36880 Schrenkiella parvula HOM05D005311 ORTHO05D006160 5.5e-47 191.8 168 61.3
Lj5A221T62 Lonicera japonica HOM05D005311 ORTHO05D006160 2.1e-46 189.9 145 69.7
BolC3t21257H Brassica oleracea HOM05D005311 ORTHO05D006160 2.7e-46 189.5 160 63.1
Aa31LG10G4090 Aethionema arabicum HOM05D002370 ORTHO05D003878 3.5e-46 189.1 159 62.9
Ah.01g024570 Amaranthus hybridus HOM05D005311 ORTHO05D006160 3.5e-46 189.1 153 65.4
A08p03390 Brassica napus HOM05D005311 ORTHO05D006160 4.6e-46 188.7 171 60.8
BraA08t32371Z Brassica rapa HOM05D005311 ORTHO05D006160 1.3e-45 187.2 171 60.8
C03p89430 Brassica napus HOM05D005311 ORTHO05D006160 2.3e-45 186.4 160 62.5
BcaB07g33454 Brassica carinata HOM05D005311 ORTHO05D006160 3.0e-45 186.0 174 62.1
BcaC08g43180 Brassica carinata HOM05D005311 ORTHO05D006160 3.9e-45 185.7 171 62.0
BolC6t35609H Brassica oleracea HOM05D005311 ORTHO05D006160 3.9e-45 185.7 171 62.0
A06p03410 Brassica napus HOM05D005311 ORTHO05D006160 1.5e-44 183.7 197 57.4
BraA06t23549Z Brassica rapa HOM05D005311 ORTHO05D006160 1.5e-44 183.7 201 56.7
AUR62027028 Chenopodium quinoa HOM05D005311 ORTHO05D006160 1.9e-44 183.3 153 62.1
AUR62030871 Chenopodium quinoa HOM05D005311 ORTHO05D006160 1.9e-44 183.3 153 62.1
C06p04800 Brassica napus HOM05D005311 ORTHO05D006160 2.5e-44 183.0 174 60.9
Duzib132G0391 Durio zibethinus HOM05D005311 ORTHO05D006160 3.3e-44 182.6 215 49.3
PSO210G6612 Papaver somniferum HOM05D005311 ORTHO05D006160 2.1e-43 179.9 191 55.5
Oeu037294.1 Olea europaea HOM05D005311 ORTHO05D006160 3.7e-43 179.1 145 64.1
PSO447G0012 Papaver somniferum HOM05D005311 ORTHO05D006160 6.3e-43 178.3 208 53.4
Prupe.8G151000 Prunus persica HOM05D005311 ORTHO05D006160 2.6e-41 172.9 176 57.4
GSVIVG01009264001 Vitis vinifera HOM05D005311 ORTHO05D006160 2.6e-41 172.9 198 50.5
Dinv09534 Davidia involucrata HOM05D000211 ORTHO05D002517 8.5e-40 167.9 189 54.0
CDE02G2678 Ceratophyllum demersum HOM05D005427 ORTHO05D006160 1.9e-39 166.8 164 56.7
HanXRQChr03g0073011 Helianthus annuus HOM05D005311 ORTHO05D006160 1.9e-39 166.8 172 55.2
BcaB04g17278 Brassica carinata HOM05D005311 ORTHO05D006160 7.9e-38 161.4 146 62.3
Sabra09G0065400 Salix brachista HOM05D000308 ORTHO05D002517 1.0e-37 161.0 112 72.3
arahy.Tifrunner.gnm1.ann1.YSC4AN Arachis hypogaea HOM05D005311 ORTHO05D006160 1.3e-37 160.6 145 60.7
Zm00001eb201730 Zea mays HOM05D005311 ORTHO05D006160 2.3e-37 159.8 169 55.6
unitig_61.g26039 Utricularia gibba HOM05D005311 ORTHO05D006160 1.6e-35 153.7 161 50.9
Os11g0549900 Oryza sativa ssp. japonica HOM05D005311 ORTHO05D006160 2.4e-34 149.8 150 55.3
PGR142G3492 Punica granatum HOM05D005311 ORTHO05D006160 3.8e-32 142.5 171 48.5
arahy.Tifrunner.gnm1.ann1.6ZTX4G Arachis hypogaea HOM05D005311 ORTHO05D006160 5.0e-32 142.1 163 50.3
EL10Ac9g22172 Beta vulgaris HOM05D005311 ORTHO05D006160 4.2e-31 139.0 118 64.4
unitig_60.g25463 Utricularia gibba HOM05D005311 ORTHO05D006160 4.6e-30 135.6 142 55.6
Haze_10287 Corylus avellana HOM05D005311 ORTHO05D006160 4.1e-26 122.5 86 69.8
Oeu025305.1 Olea europaea HOM05D005311 ORTHO05D006160 2.6e-25 119.8 113 60.2
CDE04G0288 Ceratophyllum demersum HOM05D005311 ORTHO05D006160 4.5e-25 119.0 85 68.2
Cfa004693 Carpinus fangiana HOM05D005311 ORTHO05D006160 7.7e-25 118.2 78 75.6
SMO118G0105 Selaginella moellendorffii HOM05D005311 ORTHO05D006160 3.8e-24 115.9 158 43.0
arahy.Tifrunner.gnm1.ann1.TC5M0Q Arachis hypogaea HOM05D005311 ORTHO05D006160 1.4e-23 114.0 130 50.0
arahy.Tifrunner.gnm1.ann1.HG6PX3 Arachis hypogaea HOM05D005311 ORTHO05D006160 3.2e-23 112.8 152 44.1
TAR365G0893 Trochodendron aralioides HOM05D005311 ORTHO05D006160 5.5e-23 112.1 133 52.6
CSS0025480 Camellia sinensis var. sinensis HOM05D005311 ORTHO05D006160 7.2e-23 111.7 150 50.7
Mapoly0159s0003 Marchantia polymorpha HOM05D005311 ORTHO05D006160 1.2e-22 110.9 188 41.0
Pp3c9_20640 Physcomitrium patens HOM05D005311 ORTHO05D006160 2.7e-22 109.8 156 43.6
Oeu037691.1 Olea europaea HOM05D005311 ORTHO05D006160 3.6e-22 109.4 95 64.2
SGA_v2.0_scaffold225G43064 Striga asiatica HOM05D005311 ORTHO05D006160 1.8e-21 107.1 114 54.4
Rhsim05G0093200 Rhododendron simsii HOM05D005311 ORTHO05D006160 1.3e-19 100.9 200 40.5
AagrBONN_evm.TU.Sc2ySwM_340.346 Anthoceros agrestis HOM05D005311 ORTHO05D006160 4.1e-18 95.9 180 37.8
vmacro22259 Vaccinium macrocarpon HOM05D005311 ORTHO05D006160 2.0e-17 93.6 128 45.3
Dinv44912 Davidia involucrata HOM05D005311 ORTHO05D006160 5.9e-17 92.0 106 49.1
CDE02G0336 Ceratophyllum demersum HOM05D005311 ORTHO05D006160 1.3e-16 90.9 95 55.8
Dinv16067 Davidia involucrata HOM05D005311 ORTHO05D006160 3.6e-14 82.8 121 45.5
Cre14.g614000 Chlamydomonas reinhardtii HOM05D005311 ORTHO05D006160 8.0e-14 81.6 88 47.7
HPP92_006035 Vanilla planifolia HOM05D005311 ORTHO05D006160 8.8e-13 78.2 133 46.6
SEGI_31449 Sequoiadendron giganteum HOM05D005311 ORTHO05D006160 6.3e-11 72.0 89 53.9
CARHR113150 Cardamine hirsuta HOM05D005311 ORTHO05D006160 4.1e-10 69.3 50 70.0
CBR_g12748 Chara braunii HOM05D000019 ORTHO05D000048 7.0e-10 68.6 71 49.3
CSS0010436 Camellia sinensis var. sinensis HOM05D005311 ORTHO05D006160 5.9e-09 65.5 42 73.8
MCO01G504 Micromonas commoda HOM05D005311 ORTHO05D006160 1.2e-06 57.8 176 31.2


User provided reference genes

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