Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G252400 Glycine max HOM05D004361 ORTHO05D004706 2.3e-114 415.6 220 100.0
Glyma.20G141000 Glycine max HOM05D004361 ORTHO05D004706 1.7e-101 372.9 220 90.9
VMungo0720G0988 Vigna mungo HOM05D004361 ORTHO05D004706 4.2e-87 325.1 212 84.0
Phvul.007G051800 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 3.5e-86 322.0 212 85.4
Lj5g0000713 Lotus japonicus HOM05D004361 ORTHO05D004706 1.1e-74 283.9 200 79.0
Lalb_Chr02g0144581 Lupinus albus HOM05D004361 ORTHO05D004706 1.8e-74 283.1 214 75.2
arahy.Tifrunner.gnm1.ann1.F31F99 Arachis hypogaea HOM05D004361 ORTHO05D004706 5.0e-72 275.0 224 73.2
Medtr1g105555 Medicago truncatula HOM05D004361 ORTHO05D004706 6.9e-66 254.6 215 70.7
Glyma.11G003100 Glycine max HOM05D004361 ORTHO05D004706 5.5e-63 245.0 218 67.4
Glyma.01G240500 Glycine max HOM05D004361 ORTHO05D004706 8.2e-59 231.1 213 64.8
Psat6g210400 Pisum sativum HOM05D004361 ORTHO05D004706 3.8e-56 222.2 215 63.3
Phvul.002G049100 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 8.5e-56 221.1 208 63.9
VMungo1215G1007 Vigna mungo HOM05D004361 ORTHO05D004706 1.0e-53 214.2 221 59.7
TPR.G5469 Trifolium pratense HOM05D004361 ORTHO05D004706 9.7e-52 207.6 218 58.3
Cfa000279 Carpinus fangiana HOM05D004361 ORTHO05D004706 1.1e-50 204.1 196 60.7
Haze_06732 Corylus avellana HOM05D004361 ORTHO05D004706 3.1e-50 202.6 196 61.7
MD10G1314300 Malus domestica HOM05D004361 ORTHO05D004706 5.3e-50 201.8 196 57.7
Haze_06736 Corylus avellana HOM05D004361 ORTHO05D004706 7.0e-50 201.4 196 61.7
QL05p075222 Quercus lobata HOM05D004361 ORTHO05D004706 1.0e-48 197.6 203 60.1
Lalb_Chr21g0307851 Lupinus albus HOM05D004361 ORTHO05D004706 6.5e-48 194.9 193 63.2
Lj1g0002529 Lotus japonicus HOM05D004361 ORTHO05D004706 4.2e-47 192.2 175 66.3
Prupe.4G026600 Prunus persica HOM05D004361 ORTHO05D004706 7.2e-47 191.4 207 54.6
COL.COLO4_31721 Corchorus olitorius HOM05D004361 ORTHO05D004706 2.1e-46 189.9 228 56.1
MD05G1340800 Malus domestica HOM05D004361 ORTHO05D004706 3.6e-46 189.1 206 55.8
Medtr5g005560 Medicago truncatula HOM05D004361 ORTHO05D004706 1.0e-45 187.6 208 60.6
GSVIVG01012625001 Vitis vinifera HOM05D004361 ORTHO05D004706 1.4e-45 187.2 203 55.2
RcHm_v2.0_Chr5g0004031 Rosa chinensis HOM05D004361 ORTHO05D004706 3.0e-45 186.0 203 54.7
Manes.16G012800 Manihot esculenta HOM05D004361 ORTHO05D004706 4.0e-45 185.7 216 52.3
Potri.011G026900 Populus trichocarpa HOM05D004361 ORTHO05D004706 1.5e-44 183.7 193 59.6
Thecc.06G213600 Theobroma cacao HOM05D004361 ORTHO05D004706 1.5e-44 183.7 220 53.2
TWI38G1626 Tripterygium wilfordii HOM05D004361 ORTHO05D004706 3.3e-44 182.6 205 58.5
CiPaw.09G086700 Carya illinoinensis HOM05D004361 ORTHO05D004706 9.7e-44 181.0 198 58.1
Dinv17836 Davidia involucrata HOM05D004361 ORTHO05D004706 2.2e-43 179.9 206 55.8
Duzib235G0682 Durio zibethinus HOM05D004361 ORTHO05D004706 1.4e-42 177.2 219 52.5
Duzib192G0487 Durio zibethinus HOM05D004361 ORTHO05D004706 2.4e-42 176.4 209 55.5
FAN25G3407 Fragaria x ananassa HOM05D004361 ORTHO05D004706 2.4e-42 176.4 194 53.6
CANSAT56G2280 Cannabis sativa HOM05D004361 ORTHO05D004706 9.1e-42 174.5 190 54.2
Cpa.g.sc198.2 Carica papaya HOM05D004361 ORTHO05D004706 1.2e-41 174.1 205 56.6
Psat4g215200 Pisum sativum HOM05D004361 ORTHO05D004706 2.7e-41 172.9 219 53.4
arahy.Tifrunner.gnm1.ann1.Y6FWJK Arachis hypogaea HOM05D004361 ORTHO05D004706 2.9e-40 169.5 175 60.6
FvH4_3g02690 Fragaria vesca HOM05D004361 ORTHO05D004706 5.0e-40 168.7 211 51.7
FAN21G0156 Fragaria x ananassa HOM05D004361 ORTHO05D004706 6.5e-40 168.3 216 50.5
TPR.G8297 Trifolium pratense HOM05D004361 ORTHO05D004706 1.5e-39 167.2 199 55.8
Actinidia05535 Actinidia chinensis HOM05D004361 ORTHO05D004706 1.6e-38 163.7 197 52.3
arahy.Tifrunner.gnm1.ann1.QUZ1HU Arachis hypogaea HOM05D004361 ORTHO05D004706 2.1e-38 163.3 176 59.1
Manes.17G034800 Manihot esculenta HOM05D004361 ORTHO05D004706 2.1e-38 163.3 190 50.5
CSS0034427 Camellia sinensis var. sinensis HOM05D004361 ORTHO05D004706 3.6e-38 162.5 198 51.0
Gohir.A06G145600 Gossypium hirsutum HOM05D004361 ORTHO05D004706 1.4e-37 160.6 218 52.3
Gorai.010G176700 Gossypium raimondii HOM05D004361 ORTHO05D004706 1.4e-37 160.6 199 54.3
Gohir.D06G151500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 1.8e-37 160.2 199 54.3
Lalb_Chr16g0376351 Lupinus albus HOM05D004361 ORTHO05D004706 2.3e-37 159.8 194 59.3
Sabra04G0012700 Salix brachista HOM05D004361 ORTHO05D004706 6.8e-37 158.3 193 53.9
Gohir.A06G208100 Gossypium hirsutum HOM05D004361 ORTHO05D004706 3.4e-36 156.0 196 52.0
CiPaw.10G068100 Carya illinoinensis HOM05D004361 ORTHO05D004706 4.4e-36 155.6 200 50.5
CAN.G569.44 Capsicum annuum HOM05D004361 ORTHO05D004706 7.5e-36 154.8 194 53.1
arahy.Tifrunner.gnm1.ann1.SFZ90Y Arachis hypogaea HOM05D004361 ORTHO05D004706 2.8e-35 152.9 116 73.3
Gorai.010G253100 Gossypium raimondii HOM05D004361 ORTHO05D004706 4.8e-35 152.1 204 49.0
PGSC0003DMG400002067 Solanum tuberosum HOM05D004361 ORTHO05D004706 4.8e-35 152.1 197 49.2
Gohir.D06G213000 Gossypium hirsutum HOM05D004361 ORTHO05D004706 6.3e-35 151.8 196 51.0
Potri.004G023000 Populus trichocarpa HOM05D004361 ORTHO05D004706 1.4e-34 150.6 193 51.3
TWI38G0935 Tripterygium wilfordii HOM05D004361 ORTHO05D004706 1.4e-34 150.6 217 53.5
Peaxi162Scf00678g00313 Petunia axillaris HOM05D004361 ORTHO05D004706 3.1e-34 149.4 212 49.1
Eucgr.D00816 Eucalyptus grandis HOM05D004361 ORTHO05D004706 2.7e-33 146.4 205 48.8
TAR629G1557 Trochodendron aralioides HOM05D004361 ORTHO05D004706 2.7e-33 146.4 199 52.3
Solyc02g080110.3 Solanum lycopersicum HOM05D004361 ORTHO05D004706 3.5e-33 146.0 193 49.7
MSTRG.15964 Avicennia marina HOM05D004361 ORTHO05D004706 3.8e-32 142.5 213 46.0
Nitab4.5_0006795g0040 Nicotiana tabacum HOM05D004361 ORTHO05D004706 3.8e-32 142.5 202 44.6
Sopen02g024830 Solanum pennellii HOM05D004361 ORTHO05D004706 3.8e-32 142.5 190 50.0
Actinidia14236 Actinidia chinensis HOM05D004361 ORTHO05D004706 6.5e-32 141.7 215 44.7
Ciclev10016643m.g Citrus clementina HOM05D004361 ORTHO05D004706 8.5e-32 141.4 182 54.9
Migut.M01277 Erythranthe guttata HOM05D004361 ORTHO05D004706 1.1e-31 141.0 195 51.8
CsaV3_1G011080 Cucumis sativus L. HOM05D004361 ORTHO05D004706 1.5e-31 140.6 208 47.1
CSS0045436 Camellia sinensis var. sinensis HOM05D004361 ORTHO05D004706 5.5e-31 138.7 189 47.6
Actinidia26950 Actinidia chinensis HOM05D004361 ORTHO05D004706 7.2e-31 138.3 165 53.9
MELO3C002485.2 Cucumis melo HOM05D004361 ORTHO05D004706 4.7e-30 135.6 202 45.0
vmacro03710 Vaccinium macrocarpon HOM05D004361 ORTHO05D004706 8.0e-30 134.8 214 44.4
Sc05g0008860 Simmondsia chinensis HOM05D004361 ORTHO05D004706 1.0e-29 134.4 208 45.7
Sed0010653 Sechium edule HOM05D004361 ORTHO05D004706 1.4e-29 134.0 192 50.0
ClCG03G005000 Citrullus lanatus HOM05D004361 ORTHO05D004706 8.8e-29 131.3 184 47.8
PGR004G2667 Punica granatum HOM05D004361 ORTHO05D004706 7.5e-28 128.3 203 44.3
TAR626G1160 Trochodendron aralioides HOM05D004361 ORTHO05D004706 7.5e-28 128.3 187 47.6
Sabra11G0017100 Salix brachista HOM05D004361 ORTHO05D004706 9.8e-28 127.9 142 58.5
Sed0011498 Sechium edule HOM05D004361 ORTHO05D004706 1.3e-27 127.5 210 44.3
MSTRG.7243 Avicennia marina HOM05D004361 ORTHO05D004706 3.1e-26 122.9 185 45.4
Hund21376 Selenicereus undatus HOM05D004361 ORTHO05D004706 3.1e-26 122.9 199 47.7
Hma1.2p1_0091F.1_g046140 Hydrangea macrophylla HOM05D004361 ORTHO05D004706 5.4e-26 122.1 168 49.4
Nitab4.5_0002847g0010 Nicotiana tabacum HOM05D004361 ORTHO05D004706 7.0e-26 121.7 173 50.3
Gohir.D10G015500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 1.2e-25 120.9 200 50.0
Gorai.011G017100 Gossypium raimondii HOM05D004361 ORTHO05D004706 1.2e-25 120.9 200 50.0
Gohir.A10G015500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 1.6e-25 120.6 199 51.3
AUR62022017 Chenopodium quinoa HOM05D004361 ORTHO05D004706 4.5e-25 119.0 208 43.3
Dinv20012 Davidia involucrata HOM05D004361 ORTHO05D004706 4.5e-25 119.0 160 52.5
Oeu002714.1 Olea europaea HOM05D004361 ORTHO05D004706 4.5e-25 119.0 203 42.4
Oeu026856.1 Olea europaea HOM05D004361 ORTHO05D004706 1.3e-24 117.5 207 41.5
Cc00_g17930 Coffea canephora HOM05D004361 ORTHO05D004706 1.7e-24 117.1 217 41.9
SGA_v2.0_scaffold114G32021 Striga asiatica HOM05D004361 ORTHO05D004706 1.1e-23 114.4 198 42.9
Actinidia11836 Actinidia chinensis HOM05D004361 ORTHO05D004706 1.9e-23 113.6 205 41.5
DCAR_008122 Daucus carota HOM05D004361 ORTHO05D004706 5.6e-23 112.1 140 53.6
TPR.G5514 Trifolium pratense HOM05D004361 ORTHO05D004706 5.6e-23 112.1 81 74.1
Ah.14g088180 Amaranthus hybridus HOM05D004361 ORTHO05D004706 7.3e-23 111.7 213 42.3
Nitab4.5_0001686g0040 Nicotiana tabacum HOM05D004361 ORTHO05D004706 2.8e-22 109.8 181 47.5
Rhsim02G0112300 Rhododendron simsii HOM05D004361 ORTHO05D004706 1.0e-21 107.8 190 43.7
Hund23516 Selenicereus undatus HOM05D004361 ORTHO05D004706 2.3e-21 106.7 210 41.0
Thhalv10026295m.g Eutrema salsugineum HOM05D004361 ORTHO05D004706 3.4e-20 102.8 177 43.5
AL7G32890 Arabidopsis lyrata HOM05D004361 ORTHO05D004706 4.4e-20 102.4 176 44.9
Peaxi162Scf00082g00177 Petunia axillaris HOM05D004361 ORTHO05D004706 4.4e-20 102.4 172 45.3
Lsat_1_v5_gn_4_57760 Lactuca sativa HOM05D004361 ORTHO05D004706 5.7e-20 102.1 210 39.0
A03p52710 Brassica napus HOM05D004361 ORTHO05D004706 1.3e-19 100.9 175 42.3
C07p51140 Brassica napus HOM05D004361 ORTHO05D004706 1.7e-19 100.5 175 42.9
BcaNung00863 Brassica carinata HOM05D004361 ORTHO05D004706 2.2e-19 100.1 175 42.9
BolC7t45614H Brassica oleracea HOM05D004361 ORTHO05D004706 2.2e-19 100.1 175 42.9
AT4G21215 Arabidopsis thaliana HOM05D004361 ORTHO05D004706 3.7e-19 99.4 176 42.0
MSTRG.13161 Avicennia marina HOM05D004361 ORTHO05D004706 4.9e-19 99.0 198 41.9
BcaC06g30659 Brassica carinata HOM05D004361 ORTHO05D004706 4.9e-19 99.0 175 42.9
Sc17g0007070 Simmondsia chinensis HOM05D004361 ORTHO05D004706 4.9e-19 99.0 194 38.7
Aqoxy4G01997 Aquilegia oxysepala HOM05D004361 ORTHO05D004706 6.4e-19 98.6 198 40.4
BraA03t14345Z Brassica rapa HOM05D004361 ORTHO05D004706 8.3e-19 98.2 175 41.7
Atru.chr10.2143 Acer truncatum HOM05D004361 ORTHO05D004706 1.4e-18 97.4 219 37.9
A01p12590 Brassica napus HOM05D004361 ORTHO05D004706 2.4e-18 96.7 177 44.1
BraA01t01202Z Brassica rapa HOM05D004361 ORTHO05D004706 2.4e-18 96.7 177 44.1
Carub.0007s2020 Capsella rubella HOM05D004361 ORTHO05D004706 2.4e-18 96.7 188 41.5
BcaC09g51243 Brassica carinata HOM05D004361 ORTHO05D004706 3.2e-18 96.3 177 44.1
BolC1t01465H Brassica oleracea HOM05D004361 ORTHO05D004706 4.1e-18 95.9 177 44.1
vmacro15833 Vaccinium macrocarpon HOM05D004361 ORTHO05D004706 4.1e-18 95.9 207 39.6
BcaNung03832 Brassica carinata HOM05D004361 ORTHO05D004706 7.0e-18 95.1 197 39.1
Sp7g19310 Schrenkiella parvula HOM05D004361 ORTHO05D004706 7.0e-18 95.1 183 40.4
TPR.G22022 Trifolium pratense HOM05D004361 ORTHO05D004706 1.3e-16 90.9 118 50.8
EL10Ac8g19901 Beta vulgaris HOM05D004361 ORTHO05D004706 3.0e-16 89.7 180 41.1
Sopen10g001370 Solanum pennellii HOM05D004361 ORTHO05D004706 3.0e-16 89.7 172 41.9
THA.LOC104806260 Tarenaya hassleriana HOM05D004361 ORTHO05D004706 3.9e-16 89.4 190 37.9
BolC3t20622H Brassica oleracea HOM05D004361 ORTHO05D004706 5.0e-16 89.0 174 42.0
Oeu051227.1 Olea europaea HOM05D004361 ORTHO05D004706 6.6e-16 88.6 132 46.2
HanXRQChr16g0516371 Helianthus annuus HOM05D004361 ORTHO05D004706 8.6e-16 88.2 175 41.7
MBI18_g06808_MAGBIO Magnolia biondii HOM05D004361 ORTHO05D004706 1.9e-15 87.0 189 40.2
C03p83440 Brassica napus HOM05D004361 ORTHO05D004706 2.5e-15 86.7 190 36.8
DCAR_004190 Daucus carota HOM05D004361 ORTHO05D004706 2.5e-15 86.7 144 47.9
CARHR227810 Cardamine hirsuta HOM05D004361 ORTHO05D004706 4.3e-15 85.9 205 37.6
CsaV3_6G049270 Cucumis sativus L. HOM05D004361 ORTHO05D004706 7.3e-15 85.1 196 38.8
SGA_v2.0_scaffold7G03885 Striga asiatica HOM05D004361 ORTHO05D004706 7.3e-15 85.1 161 42.9
ECA248G1765 Erigeron canadensis HOM05D004361 ORTHO05D004706 9.5e-15 84.7 172 42.4
Phvul.008G132100 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 1.2e-14 84.3 90 58.9
A08p15200 Brassica napus HOM05D004361 ORTHO05D004706 2.1e-14 83.6 180 41.1
Ah.09g235360 Amaranthus hybridus HOM05D004361 ORTHO05D004706 6.2e-14 82.0 188 39.9
Aa31LG6G3240 Aethionema arabicum HOM05D004361 ORTHO05D004706 1.4e-13 80.9 191 37.7
HanXRQChr11g0339041 Helianthus annuus HOM05D004361 ORTHO05D004706 1.8e-13 80.5 183 36.6
BraA08t33498Z Brassica rapa HOM05D004361 ORTHO05D004706 4.0e-13 79.3 179 40.8
HanXRQChr01g0002531 Helianthus annuus HOM05D004361 ORTHO05D004706 1.3e-11 74.3 166 39.8
THA.LOC104812510 Tarenaya hassleriana HOM05D004361 ORTHO05D004706 4.9e-11 72.4 182 35.2
C01p15160 Brassica napus HOM05D004361 ORTHO05D004706 1.4e-10 70.9 158 41.1
MBI02_g10098_MAGBIO Magnolia biondii HOM05D004361 ORTHO05D004706 1.9e-10 70.5 168 39.3
PSO675G1253 Papaver somniferum HOM05D004361 ORTHO05D004706 1.2e-09 67.8 210 33.8
BcaB03g11696 Brassica carinata HOM05D004361 ORTHO05D004706 1.0e-08 64.7 158 38.0
BcaC01g00706 Brassica carinata HOM05D004361 ORTHO05D004706 1.0e-08 64.7 155 38.7
Lj2E274T2 Lonicera japonica HOM05D004361 ORTHO05D004706 1.7e-08 63.9 124 40.3
MELO3C032917.2 Cucumis melo HOM05D004361 ORTHO05D004706 1.1e-07 61.2 176 37.5
SalBow1G7297 Salvia bowleyana HOM05D004361 ORTHO05D004706 1.9e-07 60.5 97 42.3
Oeu030986.1 Olea europaea HOM05D004361 ORTHO05D004706 3.3e-07 59.7 53 60.4
Lsat_1_v5_gn_1_123061 Lactuca sativa HOM05D004361 ORTHO05D004706 5.6e-07 58.9 57 54.4
Os07g0530700 Oryza sativa ssp. japonica HOM05D035907 ORTHO05D004706 4.7e-06 55.8 51 52.9
HPP92_001786 Vanilla planifolia HOM05D033938 ORTHO05D004706 4.7e-06 55.8 67 52.2


User provided reference genes

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