Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G249900 Glycine max HOM05D005221 ORTHO05D006355 8.1e-106 387.5 259 100.0
Glyma.20G143700 Glycine max HOM05D005221 ORTHO05D006355 1.4e-89 333.6 257 89.5
Phvul.007G054700 Phaseolus vulgaris HOM05D005221 ORTHO05D006355 9.0e-89 330.9 258 90.7
VMungo0720G0147 Vigna mungo HOM05D005221 ORTHO05D006355 3.8e-87 325.5 257 87.2
Lj5g0028012 Lotus japonicus HOM05D005221 ORTHO05D006355 1.2e-80 303.9 259 71.0
Ca_10924_v3 Cicer arietinum L. HOM05D005221 ORTHO05D006355 1.3e-79 300.4 265 72.5
TPR.G5529 Trifolium pratense HOM05D005221 ORTHO05D006355 1.7e-79 300.1 262 70.6
Medtr1g104840 Medicago truncatula HOM05D005221 ORTHO05D006355 1.2e-77 293.9 261 75.5
QL06p003360 Quercus lobata HOM05D005221 ORTHO05D006355 4.9e-71 271.9 257 64.2
Cpa.g.sc8.322 Carica papaya HOM05D005221 ORTHO05D006355 1.9e-70 270.0 258 69.0
TWI53G0458 Tripterygium wilfordii HOM05D005221 ORTHO05D006355 4.2e-70 268.9 257 62.6
Manes.03G181200 Manihot esculenta HOM05D005221 ORTHO05D006355 1.6e-69 266.9 261 64.8
FAN12G4146 Fragaria x ananassa HOM05D005221 ORTHO05D006355 2.7e-69 266.2 257 60.7
FAN22G0945 Fragaria x ananassa HOM05D005221 ORTHO05D006355 7.9e-69 264.6 257 59.9
Duzib151G0158 Durio zibethinus HOM05D005221 ORTHO05D006355 1.0e-68 264.2 264 65.5
FAN07G2107 Fragaria x ananassa HOM05D005221 ORTHO05D006355 1.8e-68 263.5 257 60.3
Potri.010G090700 Populus trichocarpa HOM05D005221 ORTHO05D006355 1.8e-68 263.5 258 64.7
Thecc.04G227300 Theobroma cacao HOM05D005221 ORTHO05D006355 2.5e-67 259.6 260 64.2
FvH4_4g15060 Fragaria vesca HOM05D005221 ORTHO05D006355 3.3e-67 259.2 256 60.2
Sabra10G0052800 Salix brachista HOM05D005221 ORTHO05D006355 1.3e-66 257.3 257 62.3
Duzib212G0790 Durio zibethinus HOM05D005221 ORTHO05D006355 2.1e-66 256.5 266 64.3
Potri.008G150300 Populus trichocarpa HOM05D005221 ORTHO05D006355 1.4e-65 253.8 257 61.9
Ciclev10005615m.g Citrus clementina HOM05D005221 ORTHO05D006355 2.4e-65 253.1 254 66.9
RcHm_v2.0_Chr4g0416801 Rosa chinensis HOM05D005221 ORTHO05D006355 2.4e-65 253.1 257 60.3
Manes.15G026700 Manihot esculenta HOM05D005221 ORTHO05D006355 3.1e-65 252.7 257 67.3
Cfa015617 Carpinus fangiana HOM05D005221 ORTHO05D006355 4.0e-65 252.3 257 64.2
Prupe.1G155500 Prunus persica HOM05D005221 ORTHO05D006355 1.5e-64 250.4 261 60.5
CSS0023930 Camellia sinensis var. sinensis HOM05D005221 ORTHO05D006355 4.5e-64 248.8 257 60.3
MD16G1188800 Malus domestica HOM05D005221 ORTHO05D006355 7.6e-64 248.1 266 59.4
TWI09G0254 Tripterygium wilfordii HOM05D005221 ORTHO05D006355 1.0e-63 247.7 257 58.8
COL.COLO4_06196 Corchorus olitorius HOM05D005221 ORTHO05D006355 1.1e-62 244.2 254 63.4
CANSAT78G1299 Cannabis sativa HOM05D005221 ORTHO05D006355 1.4e-62 243.8 285 67.7
Lalb_Chr06g0160581 Lupinus albus HOM05D005221 ORTHO05D006355 4.2e-62 242.3 259 70.7
Oeu037551.1 Olea europaea HOM05D005221 ORTHO05D006355 5.5e-62 241.9 257 57.6
TAR362G0899 Trochodendron aralioides HOM05D005221 ORTHO05D006355 5.5e-62 241.9 257 56.4
Sabra08G0114400 Salix brachista HOM05D005221 ORTHO05D006355 7.1e-62 241.5 258 59.7
Cc03_g03470 Coffea canephora HOM05D005221 ORTHO05D006355 1.3e-60 237.3 259 56.4
Peaxi162Scf00437g00052 Petunia axillaris HOM05D005221 ORTHO05D006355 1.3e-60 237.3 254 56.3
Sed0008919 Sechium edule HOM05D005221 ORTHO05D006355 1.1e-59 234.2 261 58.2
MSTRG.21844 Avicennia marina HOM05D005221 ORTHO05D006355 2.5e-59 233.0 260 57.3
CAN.G668.8 Capsicum annuum HOM05D005221 ORTHO05D006355 6.3e-58 228.4 249 56.2
Duzib052G0196 Durio zibethinus HOM05D005221 ORTHO05D006355 8.2e-58 228.0 263 51.7
Nn1g02242 Nelumbo nucifera HOM05D005221 ORTHO05D006355 3.1e-57 226.1 268 55.2
Nitab4.5_0001545g0020 Nicotiana tabacum HOM05D005221 ORTHO05D006355 3.1e-57 226.1 258 55.0
Sed0012211 Sechium edule HOM05D005221 ORTHO05D006355 3.1e-57 226.1 264 56.4
ClCG06G006000 Citrullus lanatus HOM05D005221 ORTHO05D006355 4.1e-57 225.7 244 62.7
Peaxi162Scf00642g00022 Petunia axillaris HOM05D005221 ORTHO05D006355 4.1e-57 225.7 258 56.2
MD13G1188400 Malus domestica HOM05D005221 ORTHO05D006355 5.3e-57 225.3 258 54.3
Nitab4.5_0000260g0100 Nicotiana tabacum HOM05D005221 ORTHO05D006355 6.9e-57 224.9 259 55.2
CiPaw.01G163700 Carya illinoinensis HOM05D005221 ORTHO05D006355 1.2e-56 224.2 238 60.5
CiPaw.02G095300 Carya illinoinensis HOM05D005221 ORTHO05D006355 1.2e-56 224.2 258 57.4
MELO3C014491.2 Cucumis melo HOM05D005221 ORTHO05D006355 2.0e-56 223.4 259 59.5
Aqoxy2G03348 Aquilegia oxysepala HOM05D005221 ORTHO05D006355 3.4e-56 222.6 258 52.7
Nn4g26263 Nelumbo nucifera HOM05D005221 ORTHO05D006355 5.9e-56 221.9 244 54.9
Actinidia23488 Actinidia chinensis HOM05D005221 ORTHO05D006355 2.9e-55 219.5 260 54.2
EL10As3g23360 Beta vulgaris HOM05D005221 ORTHO05D006355 8.5e-55 218.0 253 56.9
Rhsim04G0205100 Rhododendron simsii HOM05D005221 ORTHO05D006355 1.4e-54 217.2 258 52.3
PGSC0003DMG400031851 Solanum tuberosum HOM05D005221 ORTHO05D006355 1.9e-54 216.9 253 54.9
Solyc09g075740.1 Solanum lycopersicum HOM05D005221 ORTHO05D006355 2.5e-54 216.5 252 56.7
CAN.G873.5 Capsicum annuum HOM05D005221 ORTHO05D006355 3.2e-54 216.1 259 53.7
Sopen09g030550 Solanum pennellii HOM05D005221 ORTHO05D006355 4.2e-54 215.7 252 56.0
Gohir.D09G216800 Gossypium hirsutum HOM05D005221 ORTHO05D006355 7.2e-54 214.9 258 61.2
Solyc06g054280.1 Solanum lycopersicum HOM05D005221 ORTHO05D006355 1.6e-53 213.8 257 54.9
Gohir.A09G214300 Gossypium hirsutum HOM05D005221 ORTHO05D006355 2.1e-53 213.4 258 60.5
PGSC0003DMG400011822 Solanum tuberosum HOM05D005221 ORTHO05D006355 2.1e-53 213.4 259 53.3
Sc13g0004240 Simmondsia chinensis HOM05D005221 ORTHO05D006355 2.7e-53 213.0 267 53.2
Gorai.006G237300 Gossypium raimondii HOM05D005221 ORTHO05D006355 3.6e-53 212.6 258 60.9
Sopen06g019400 Solanum pennellii HOM05D005221 ORTHO05D006355 3.6e-53 212.6 259 53.7
CsaV3_6G038280 Cucumis sativus L. HOM05D005221 ORTHO05D006355 1.0e-52 211.1 258 57.8
ECA234G2268 Erigeron canadensis HOM05D005221 ORTHO05D006355 6.7e-52 208.4 240 55.4
FAN17G2349 Fragaria x ananassa HOM05D005221 ORTHO05D006355 8.8e-52 208.0 256 48.0
DCAR_030618 Daucus carota HOM05D005221 ORTHO05D006355 3.3e-51 206.1 257 52.1
Nitab4.5_0000321g0080 Nicotiana tabacum HOM05D005221 ORTHO05D006355 2.8e-50 203.0 257 52.9
Sc19g0004310 Simmondsia chinensis HOM05D005221 ORTHO05D006355 6.3e-50 201.8 260 58.1
Dinv38425 Davidia involucrata HOM05D005221 ORTHO05D006355 9.1e-49 198.0 185 64.9
Lsat_1_v5_gn_5_148500 Lactuca sativa HOM05D005221 ORTHO05D006355 3.4e-48 196.1 253 53.8
Lj3P740T18 Lonicera japonica HOM05D005221 ORTHO05D006355 5.9e-48 195.3 258 53.1
DCAR_002395 Daucus carota HOM05D005221 ORTHO05D006355 1.3e-47 194.1 260 51.5
PGR142G0441 Punica granatum HOM05D005221 ORTHO05D006355 1.3e-47 194.1 286 52.8
Migut.N00171 Erythranthe guttata HOM05D005221 ORTHO05D006355 6.5e-47 191.8 270 49.6
SGA_v2.0_scaffold10G05107 Striga asiatica HOM05D005221 ORTHO05D006355 6.5e-47 191.8 252 54.8
THA.LOC104802759 Tarenaya hassleriana HOM05D005221 ORTHO05D006355 5.5e-46 188.7 250 53.6
HanXRQChr10g0296561 Helianthus annuus HOM05D005221 ORTHO05D006355 2.3e-44 183.3 258 50.0
TAR636G2071 Trochodendron aralioides HOM05D002203 ORTHO05D002647 5.1e-44 182.2 215 57.7
THA.LOC104818779 Tarenaya hassleriana HOM05D005221 ORTHO05D006355 8.8e-44 181.4 255 52.9
HanXRQChr04g0110301 Helianthus annuus HOM05D005221 ORTHO05D006355 2.6e-43 179.9 242 51.2
DCAR_024599 Daucus carota HOM05D005221 ORTHO05D006355 1.4e-41 174.1 257 43.6
Hma1.2p1_0511F.1_g168910 Hydrangea macrophylla HOM05D005221 ORTHO05D006355 1.4e-41 174.1 244 54.5
arahy.Tifrunner.gnm1.ann1.0RM5BV Arachis hypogaea HOM05D005221 ORTHO05D006355 4.1e-41 172.6 268 56.0
Aa31LG5G16450 Aethionema arabicum HOM05D005221 ORTHO05D006355 5.3e-41 172.2 253 53.8
Eucgr.B01092 Eucalyptus grandis HOM05D005221 ORTHO05D006355 9.1e-41 171.4 267 51.3
Atru.chr4.2515 Acer truncatum HOM05D005221 ORTHO05D006355 1.5e-40 170.6 266 48.9
PGR004G1499 Punica granatum HOM05D005221 ORTHO05D006355 1.3e-39 167.5 275 42.5
Carub.0003s0539 Capsella rubella HOM05D005221 ORTHO05D006355 3.8e-39 166.0 241 52.7
Oeu029026.1 Olea europaea HOM05D005221 ORTHO05D006355 1.1e-38 164.5 184 49.5
Aqoxy5G00503 Aquilegia oxysepala HOM05D005221 ORTHO05D006355 2.5e-38 163.3 261 48.7
Thhalv10021379m.g Eutrema salsugineum HOM05D005221 ORTHO05D006355 3.2e-38 162.9 244 65.2
BraA03t10262Z Brassica rapa HOM05D005221 ORTHO05D006355 4.2e-38 162.5 250 52.0
AL3G16790 Arabidopsis lyrata HOM05D005221 ORTHO05D006355 5.5e-38 162.2 244 50.0
BolC3t13571H Brassica oleracea HOM05D005221 ORTHO05D006355 1.2e-37 161.0 242 51.7
Sp3g04920 Schrenkiella parvula HOM05D005221 ORTHO05D006355 1.2e-37 161.0 244 65.6
BraA05t22925Z Brassica rapa HOM05D005221 ORTHO05D006355 2.7e-37 159.8 244 51.6
AT3G05980 Arabidopsis thaliana HOM05D005221 ORTHO05D006355 6.1e-37 158.7 241 48.5
A05p42050 Brassica napus HOM05D005221 ORTHO05D006355 1.0e-36 157.9 242 51.7
CARHR080490 Cardamine hirsuta HOM05D005221 ORTHO05D006355 1.0e-36 157.9 251 60.6
A03p09440 Brassica napus HOM05D005221 ORTHO05D006355 1.4e-36 157.5 251 56.2
Nitab4.5_0007609g0020 Nicotiana tabacum HOM05D005221 ORTHO05D006355 2.3e-36 156.8 227 51.5
BcaC05g30072 Brassica carinata HOM05D005221 ORTHO05D006355 3.0e-36 156.4 242 50.4
C05p61280 Brassica napus HOM05D005221 ORTHO05D006355 6.7e-36 155.2 242 52.5
BolC5t34787H Brassica oleracea HOM05D005221 ORTHO05D006355 6.7e-36 155.2 242 52.5
C03p11020 Brassica napus HOM05D005221 ORTHO05D006355 1.1e-35 154.5 250 50.4
BcaB01g04866 Brassica carinata HOM05D005221 ORTHO05D006355 7.4e-35 151.8 253 56.1
BcaB01g05141 Brassica carinata HOM05D005221 ORTHO05D006355 2.8e-34 149.8 240 50.8
BcaC09g47869 Brassica carinata HOM05D005221 ORTHO05D006355 3.7e-34 149.4 231 51.9
BolC1t05645H Brassica oleracea HOM05D005221 ORTHO05D006355 3.7e-34 149.4 231 53.2
MSTRG.4014 Avicennia marina HOM05D005221 ORTHO05D006355 6.3e-34 148.7 258 41.5
Carub.0006s1768 Capsella rubella HOM05D005221 ORTHO05D006355 6.3e-34 148.7 262 51.9
A10p20340 Brassica napus HOM05D005221 ORTHO05D006355 2.4e-33 146.7 251 56.6
BraA10t44105Z Brassica rapa HOM05D005221 ORTHO05D006355 2.4e-33 146.7 251 56.6
BolC9t58548H Brassica oleracea HOM05D005221 ORTHO05D006355 1.2e-32 144.4 247 52.6
BraA01t04457Z Brassica rapa HOM05D005221 ORTHO05D006355 1.2e-32 144.4 246 48.4
MBI17_g31753_MAGBIO Magnolia biondii HOM05D005221 ORTHO05D006355 1.2e-32 144.4 253 40.3
CARHR193620 Cardamine hirsuta HOM05D005221 ORTHO05D006355 2.6e-32 143.3 265 51.7
Thhalv10016073m.g Eutrema salsugineum HOM05D005221 ORTHO05D006355 3.5e-32 142.9 256 49.2
Ah.04g154490 Amaranthus hybridus HOM05D005221 ORTHO05D006355 4.5e-32 142.5 208 52.4
BcaC04g18576 Brassica carinata HOM05D005221 ORTHO05D006355 7.7e-32 141.7 253 56.1
C09p56940 Brassica napus HOM05D005221 ORTHO05D006355 7.7e-32 141.7 253 56.1
AT5G19340 Arabidopsis thaliana HOM05D005221 ORTHO05D006355 1.3e-31 141.0 260 53.1
Lj6P597T84 Lonicera japonica HOM05D005221 ORTHO05D006355 3.8e-31 139.4 184 50.0
AL6G30830 Arabidopsis lyrata HOM05D005221 ORTHO05D006355 5.0e-31 139.0 256 54.7
Sp6g25070 Schrenkiella parvula HOM05D005221 ORTHO05D006355 1.8e-28 130.6 258 52.7
Hma1.2p1_0995F.1_g245620 Hydrangea macrophylla HOM05D005221 ORTHO05D006355 2.2e-26 123.6 176 43.2
BcaB08g36581 Brassica carinata HOM05D005221 ORTHO05D006355 4.8e-26 122.5 245 56.3
PSO302G0248 Papaver somniferum HOM05D005221 ORTHO05D006355 6.3e-26 122.1 176 43.8
AUR62038640 Chenopodium quinoa HOM05D005221 ORTHO05D006355 6.5e-23 112.1 163 44.8
BcaNung07026 Brassica carinata HOM05D005221 ORTHO05D006355 1.5e-22 110.9 166 56.6
SGA_v2.0_scaffold237G43792 Striga asiatica HOM05D005221 ORTHO05D006355 9.4e-22 108.2 258 34.1
SGA_v2.0_scaffold39G15291 Striga asiatica HOM05D005221 ORTHO05D006355 1.0e-20 104.8 259 35.5
Psat6g208720 Pisum sativum HOM05D005221 ORTHO05D006355 1.5e-19 100.9 79 78.5
Nn5g28878 Nelumbo nucifera HOM05D005221 ORTHO05D006355 5.7e-19 99.0 93 58.1
Nn3g20708 Nelumbo nucifera HOM05D005221 ORTHO05D006355 3.7e-18 96.3 93 58.1
AUR62038093 Chenopodium quinoa HOM05D005221 ORTHO05D006355 1.0e-15 88.2 149 59.7
Nn1g06084 Nelumbo nucifera HOM05D005221 ORTHO05D006355 5.9e-08 62.4 36 72.2
Nn1g04890 Nelumbo nucifera HOM05D002458 ORTHO05D002603 6.6e-07 58.9 167 29.9
ATR0626G396 Amborella trichopoda HOM05D005221 ORTHO05D006355 8.6e-07 58.5 163 28.8
CiPaw.01G019100 Carya illinoinensis HOM05D002458 ORTHO05D002603 9.5e-06 55.1 164 31.7


User provided reference genes

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