Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G247300 Glycine max HOM05D005574 ORTHO05D007102 3.8e-199 698.0 352 100.0
Glyma.20G147200 Glycine max HOM05D005574 ORTHO05D007102 8.2e-186 653.7 352 94.0
Phvul.007G058100 Phaseolus vulgaris HOM05D005574 ORTHO05D007102 2.1e-149 532.7 356 77.5
VMungo0720G0566 Vigna mungo HOM05D005574 ORTHO05D007102 9.8e-147 523.9 356 75.6
arahy.Tifrunner.gnm1.ann1.R5YE9W Arachis hypogaea HOM05D005574 ORTHO05D007102 2.2e-122 443.0 340 67.6
arahy.Tifrunner.gnm1.ann1.PUQJ4X Arachis hypogaea HOM05D005574 ORTHO05D007102 4.1e-121 438.7 374 63.4
Lj5g0023935 Lotus japonicus HOM05D005574 ORTHO05D007102 1.6e-117 426.8 344 65.7
Ca_10888_v3 Cicer arietinum L. HOM05D005574 ORTHO05D007102 2.4e-116 422.9 361 64.0
Medtr1g103560 Medicago truncatula HOM05D005574 ORTHO05D007102 3.5e-112 409.1 338 63.3
TPR.G5479 Trifolium pratense HOM05D005574 ORTHO05D007102 1.0e-111 407.5 363 60.6
QL06p002087 Quercus lobata HOM05D005574 ORTHO05D007102 3.1e-108 396.0 337 60.8
Psat6g206920 Pisum sativum HOM05D005574 ORTHO05D007102 7.6e-107 391.3 362 58.3
Cfa015664 Carpinus fangiana HOM05D005574 ORTHO05D007102 3.8e-106 389.0 361 58.4
Haze_00883 Corylus avellana HOM05D005574 ORTHO05D007102 4.2e-105 385.6 363 58.1
Lalb_Chr02g0140631 Lupinus albus HOM05D005574 ORTHO05D007102 1.9e-102 376.7 363 57.6
Prupe.1G015700 Prunus persica HOM05D005574 ORTHO05D007102 1.9e-102 376.7 338 58.3
CiPaw.02G098000 Carya illinoinensis HOM05D005574 ORTHO05D007102 1.1e-100 370.9 360 56.7
Ciclev10005241m.g Citrus clementina HOM05D005574 ORTHO05D007102 1.8e-100 370.2 365 54.5
Thecc.04G192400 Theobroma cacao HOM05D005574 ORTHO05D007102 3.1e-100 369.4 348 54.3
Atru.chr4.2447 Acer truncatum HOM05D005574 ORTHO05D007102 2.0e-99 366.7 355 56.6
MD13G1194900 Malus domestica HOM05D005574 ORTHO05D007102 3.2e-97 359.4 341 57.2
RcHm_v2.0_Chr4g0415861 Rosa chinensis HOM05D005574 ORTHO05D007102 9.3e-97 357.8 343 54.5
GSVIVG01017997001 Vitis vinifera HOM05D005574 ORTHO05D007102 1.2e-96 357.5 334 56.9
MD16G1195700 Malus domestica HOM05D005574 ORTHO05D007102 1.6e-96 357.1 341 56.0
TWI53G0495 Tripterygium wilfordii HOM05D005574 ORTHO05D007102 4.6e-96 355.5 339 55.5
Duzib268G0255 Durio zibethinus HOM05D005574 ORTHO05D007102 1.3e-95 354.0 359 54.0
FAN07G2976 Fragaria x ananassa HOM05D005574 ORTHO05D007102 1.8e-95 353.6 353 55.0
CSS0019466 Camellia sinensis var. sinensis HOM05D005574 ORTHO05D007102 2.3e-95 353.2 334 54.2
COL.COLO4_05700 Corchorus olitorius HOM05D005574 ORTHO05D007102 2.3e-95 353.2 347 52.2
Potri.010G086100 Populus trichocarpa HOM05D005574 ORTHO05D007102 8.7e-95 351.3 353 55.2
FAN02G2947 Fragaria x ananassa HOM05D005574 ORTHO05D007102 3.3e-94 349.4 349 53.3
Sabra10G0057600 Salix brachista HOM05D005574 ORTHO05D007102 2.1e-93 346.7 358 54.7
FAN12G0525 Fragaria x ananassa HOM05D005574 ORTHO05D007102 3.7e-93 345.9 360 52.2
FAN12G2145 Fragaria x ananassa HOM05D005574 ORTHO05D007102 3.7e-93 345.9 360 52.2
FAN12G2997 Fragaria x ananassa HOM05D005574 ORTHO05D007102 3.7e-93 345.9 360 52.2
FvH4_4g16270 Fragaria vesca HOM05D005574 ORTHO05D007102 1.4e-92 344.0 353 52.7
Dinv44545 Davidia involucrata HOM05D005574 ORTHO05D007102 2.4e-92 343.2 350 54.0
Nn6g34090 Nelumbo nucifera HOM05D005574 ORTHO05D007102 3.1e-92 342.8 356 49.7
CANSAT78G2217 Cannabis sativa HOM05D005574 ORTHO05D007102 2.0e-91 340.1 355 53.5
Cc03_g03930 Coffea canephora HOM05D005574 ORTHO05D007102 2.0e-91 340.1 346 52.9
TAR362G0087 Trochodendron aralioides HOM05D005574 ORTHO05D007102 2.6e-91 339.7 341 54.5
Hma1.2p1_0602F.1_g187410 Hydrangea macrophylla HOM05D005574 ORTHO05D007102 9.3e-89 331.3 342 51.5
Peaxi162Scf00092g00614 Petunia axillaris HOM05D005574 ORTHO05D007102 1.6e-88 330.5 354 52.3
Gorai.011G151700 Gossypium raimondii HOM05D005574 ORTHO05D007102 4.6e-88 328.9 362 53.3
Sed0027704 Sechium edule HOM05D005574 ORTHO05D007102 3.0e-87 326.2 321 51.4
ClCG05G005090 Citrullus lanatus HOM05D005574 ORTHO05D007102 8.7e-87 324.7 334 49.4
CsaV3_3G013190 Cucumis sativus L. HOM05D005574 ORTHO05D007102 1.1e-86 324.3 335 48.4
Actinidia23520 Actinidia chinensis HOM05D005574 ORTHO05D007102 5.7e-86 322.0 351 50.7
Gohir.A10G129500 Gossypium hirsutum HOM05D005574 ORTHO05D007102 7.4e-86 321.6 357 51.3
Gohir.D10G136700 Gossypium hirsutum HOM05D005574 ORTHO05D007102 4.8e-85 318.9 362 52.8
Aqoxy2G03411 Aquilegia oxysepala HOM05D005574 ORTHO05D007102 1.8e-84 317.0 346 48.6
MELO3C006525.2 Cucumis melo HOM05D005574 ORTHO05D007102 1.8e-84 317.0 362 45.9
Solyc09g082180.3 Solanum lycopersicum HOM05D005574 ORTHO05D007102 1.8e-84 317.0 350 50.0
Nitab4.5_0004135g0020 Nicotiana tabacum HOM05D005574 ORTHO05D007102 3.1e-84 316.2 340 51.2
Manes.03G177100 Manihot esculenta HOM05D005574 ORTHO05D007102 6.9e-84 315.1 330 49.4
Sopen09g031060 Solanum pennellii HOM05D005574 ORTHO05D007102 1.5e-83 313.9 352 50.0
Dinv14005 Davidia involucrata HOM05D005574 ORTHO05D007102 2.9e-82 309.7 325 53.5
Rhsim04G0201500 Rhododendron simsii HOM05D005574 ORTHO05D007102 2.9e-82 309.7 347 49.9
Oeu058969.1 Olea europaea HOM05D005574 ORTHO05D007102 8.4e-82 308.1 355 48.5
Nitab4.5_0001920g0060 Nicotiana tabacum HOM05D005574 ORTHO05D007102 3.2e-81 306.2 340 51.2
Sed0003604 Sechium edule HOM05D005574 ORTHO05D007102 3.2e-81 306.2 320 51.2
PSO210G4004 Papaver somniferum HOM05D005574 ORTHO05D007102 6.7e-79 298.5 342 48.2
Migut.G00347 Erythranthe guttata HOM05D005574 ORTHO05D007102 5.7e-78 295.4 331 48.0
MSTRG.4036 Avicennia marina HOM05D005574 ORTHO05D007102 1.6e-77 293.9 347 45.8
MSTRG.9977 Avicennia marina HOM05D005574 ORTHO05D007102 6.9e-76 288.5 353 46.2
Duzib151G0572 Durio zibethinus HOM05D005574 ORTHO05D007102 1.2e-75 287.7 302 52.3
Hund12118 Selenicereus undatus HOM05D005574 ORTHO05D007102 3.4e-75 286.2 335 47.5
AUR62034712 Chenopodium quinoa HOM05D005574 ORTHO05D007102 5.9e-75 285.4 362 43.9
SGA_v2.0_scaffold257G45710 Striga asiatica HOM05D005574 ORTHO05D007102 1.0e-74 284.6 332 46.4
SalBow2G1029 Salvia bowleyana HOM05D005574 ORTHO05D007102 2.9e-74 283.1 335 43.9
THA.LOC104800960 Tarenaya hassleriana HOM05D005574 ORTHO05D007102 2.9e-74 283.1 355 43.4
DCAR_030644 Daucus carota HOM05D005574 ORTHO05D007102 8.5e-74 281.6 342 47.1
PSO761G0453 Papaver somniferum HOM05D005574 ORTHO05D007102 8.5e-74 281.6 354 45.2
AL1G15280 Arabidopsis lyrata HOM05D005574 ORTHO05D007102 7.4e-70 268.5 358 43.0
Ah.13g071610 Amaranthus hybridus HOM05D005574 ORTHO05D007102 2.8e-69 266.5 366 43.4
Eucgr.B01081 Eucalyptus grandis HOM05D005574 ORTHO05D007102 2.8e-69 266.5 304 50.3
EL10Ac3g06494 Beta vulgaris HOM05D005574 ORTHO05D007102 9.1e-68 261.5 338 42.9
BcaC05g24386 Brassica carinata HOM05D005574 ORTHO05D007102 1.5e-67 260.8 329 44.1
C05p03780 Brassica napus HOM05D005574 ORTHO05D007102 1.5e-67 260.8 329 44.1
BolC5t29155H Brassica oleracea HOM05D005574 ORTHO05D007102 1.5e-67 260.8 329 44.1
Sc19g0004060 Simmondsia chinensis HOM05D005574 ORTHO05D007102 2.6e-67 260.0 315 47.0
Thhalv10002568m.g Eutrema salsugineum HOM05D005574 ORTHO05D007102 4.5e-67 259.2 346 40.8
AUR62033680 Chenopodium quinoa HOM05D005574 ORTHO05D007102 7.7e-67 258.5 307 46.9
A10p04140 Brassica napus HOM05D005574 ORTHO05D007102 1.0e-66 258.1 324 43.8
BraA10t42684Z Brassica rapa HOM05D005574 ORTHO05D007102 1.0e-66 258.1 324 43.8
Lsat_1_v5_gn_5_104360 Lactuca sativa HOM05D005574 ORTHO05D007102 2.9e-66 256.5 325 45.5
BcaB02g06860 Brassica carinata HOM05D005574 ORTHO05D007102 2.5e-65 253.4 340 41.2
Sp1g04310 Schrenkiella parvula HOM05D005574 ORTHO05D007102 2.5e-65 253.4 327 42.5
Potri.008G154400 Populus trichocarpa HOM05D005574 ORTHO05D007102 3.0e-63 246.5 253 53.4
CARHR004930 Cardamine hirsuta HOM05D005574 ORTHO05D007102 3.3e-62 243.0 329 42.2
HanXRQChr10g0294751 Helianthus annuus HOM05D005574 ORTHO05D007102 2.8e-61 240.0 329 44.1
Carub.0001s0477 Capsella rubella HOM05D005574 ORTHO05D007102 1.8e-60 237.3 350 38.6
Aa31LG1G19200 Aethionema arabicum HOM05D005574 ORTHO05D007102 2.4e-60 236.9 318 40.6
CDE07G0532 Ceratophyllum demersum HOM05D005574 ORTHO05D007102 2.2e-58 230.3 329 41.3
PGR142G0953 Punica granatum HOM05D005574 ORTHO05D007102 8.5e-58 228.4 349 43.0
ECA234G0493 Erigeron canadensis HOM05D005574 ORTHO05D007102 2.1e-56 223.8 341 41.6
CAN.G2204.2 Capsicum annuum HOM05D000340 ORTHO05D007102 3.6e-56 223.0 208 53.4
MBI15_g31435_MAGBIO Magnolia biondii HOM05D005574 ORTHO05D007102 1.4e-52 211.1 254 44.5
ATR0697G187 Amborella trichopoda HOM05D005574 ORTHO05D007102 2.4e-52 210.3 308 39.9
AT1G05440 Arabidopsis thaliana HOM05D005574 ORTHO05D007102 7.0e-52 208.8 360 36.1
CAN.G2204.4 Capsicum annuum HOM05D005574 ORTHO05D007102 1.8e-47 194.1 223 49.3
HPP92_009613 Vanilla planifolia HOM05D005574 ORTHO05D007102 3.4e-46 189.9 333 36.6
CDE06G2673 Ceratophyllum demersum HOM05D005574 ORTHO05D007102 1.6e-43 181.0 260 41.9
Os03g0747100 Oryza sativa ssp. japonica HOM05D005574 ORTHO05D007102 2.9e-42 176.8 319 37.0
SEGI_38250 Sequoiadendron giganteum HOM05D005574 ORTHO05D007102 6.5e-42 175.6 334 32.9
Zm00001eb057090 Zea mays HOM05D005574 ORTHO05D007102 1.9e-41 174.1 319 36.1
Cpa.g.sc58.90 Carica papaya HOM05D005574 ORTHO05D007102 6.8e-39 165.6 131 58.8
unitig_32.g11728 Utricularia gibba HOM05D005574 ORTHO05D007102 4.4e-38 162.9 354 34.5
ECA234G4095 Erigeron canadensis HOM05D005574 ORTHO05D007102 5.4e-36 156.0 173 46.2
Actinidia40140 Actinidia chinensis HOM05D005574 ORTHO05D007102 1.0e-34 151.8 202 44.6
SMO174G0025 Selaginella moellendorffii HOM05D005574 ORTHO05D007102 9.5e-33 145.2 311 32.2
BolC5t33236H Brassica oleracea HOM05D005574 ORTHO05D007102 1.4e-31 141.4 197 39.6
BolC1t04542H Brassica oleracea HOM05D005574 ORTHO05D007102 6.8e-31 139.0 219 36.5
C01p35960 Brassica napus HOM05D005574 ORTHO05D007102 2.6e-30 137.1 155 42.6
C03p05690 Brassica napus HOM05D005574 ORTHO05D022054 5.9e-27 125.9 102 55.9
AagrBONN_evm.TU.Sc2ySwM_117.3111 Anthoceros agrestis HOM05D005574 ORTHO05D007102 5.2e-23 112.8 274 29.2
BolC1t03554H Brassica oleracea HOM05D005574 ORTHO05D022054 5.2e-23 112.8 94 54.3
BcaC07g42131 Brassica carinata HOM05D005574 ORTHO05D007102 8.6e-18 95.5 106 41.5
C08p51720 Brassica napus HOM05D005574 ORTHO05D007102 8.6e-18 95.5 106 41.5
A03p47670 Brassica napus HOM05D005574 ORTHO05D007102 2.1e-16 90.9 108 42.6
A09p67440 Brassica napus HOM05D005574 ORTHO05D007102 2.1e-16 90.9 93 45.2
BraA09t37853Z Brassica rapa HOM05D005574 ORTHO05D007102 2.1e-16 90.9 108 42.6
A02p27770 Brassica napus HOM05D005574 ORTHO05D007102 3.6e-16 90.1 108 42.6
BolC3t13081H Brassica oleracea HOM05D005574 ORTHO05D007102 3.6e-16 90.1 128 39.1
BraA02t07818Z Brassica rapa HOM05D005574 ORTHO05D007102 3.6e-16 90.1 108 42.6
BcaC09g49493 Brassica carinata HOM05D005574 ORTHO05D007102 1.1e-15 88.6 156 35.3
BraA07t27929Z Brassica rapa HOM05D005574 ORTHO05D007102 1.1e-15 88.6 108 40.7
BcaB07g33702 Brassica carinata HOM05D005574 ORTHO05D007102 1.4e-15 88.2 199 31.2
BraA09t41109Z Brassica rapa HOM05D005574 ORTHO05D007102 2.3e-15 87.4 108 42.6
A09p57160 Brassica napus HOM05D005574 ORTHO05D007102 1.7e-13 81.3 61 60.7
Sabra08G0117800 Salix brachista HOM05D000633 ORTHO05D000477 8.3e-13 79.0 75 50.7
C01p45800 Brassica napus HOM05D005574 ORTHO05D007102 1.9e-12 77.8 156 29.5
BcaC09g48798 Brassica carinata HOM05D005574 ORTHO05D007102 3.2e-12 77.0 98 38.8
Glyma.19G163100 Glycine max HOM05D005574 ORTHO05D214454 7.1e-12 75.9 50 82.0


User provided reference genes

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