Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G243900 Glycine max HOM05D004359 ORTHO05D005052 0.0e+00 1384.4 701 100.0
Glyma.20G150500 Glycine max HOM05D004359 ORTHO05D005052 0.0e+00 1322.4 698 96.6
Phvul.007G061900 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 0.0e+00 1248.4 698 91.8
VMungo0720G0936 Vigna mungo HOM05D004359 ORTHO05D005052 0.0e+00 1245.3 698 91.0
Ca_10850_v3 Cicer arietinum L. HOM05D004359 ORTHO05D005052 0.0e+00 1189.1 701 86.2
TPR.G26109 Trifolium pratense HOM05D004359 ORTHO05D005052 0.0e+00 1174.8 701 85.2
Lj5g0004472 Lotus japonicus HOM05D004359 ORTHO05D005052 0.0e+00 1166.8 701 85.0
Psat6g204080 Pisum sativum HOM05D004359 ORTHO05D005052 0.0e+00 1162.5 700 84.6
Medtr1g102840 Medicago truncatula HOM05D004359 ORTHO05D005052 0.0e+00 1154.8 701 84.0
arahy.Tifrunner.gnm1.ann1.4267PD Arachis hypogaea HOM05D004359 ORTHO05D005052 0.0e+00 1149.0 698 83.4
Lalb_Chr06g0160731 Lupinus albus HOM05D004359 ORTHO05D005052 0.0e+00 1147.9 702 83.0
arahy.Tifrunner.gnm1.ann1.GV821P Arachis hypogaea HOM05D004359 ORTHO05D005052 0.0e+00 1146.7 712 82.0
Cfa008449 Carpinus fangiana HOM05D004359 ORTHO05D005052 6.2e-310 1067.0 702 77.8
Lalb_Chr03g0037471 Lupinus albus HOM05D004359 ORTHO05D005052 4.1e-306 1054.3 702 76.9
QL06p000928 Quercus lobata HOM05D004359 ORTHO05D005052 5.4e-306 1053.9 704 75.7
Glyma.10G003000 Glycine max HOM05D004359 ORTHO05D005052 3.3e-303 1044.6 701 76.3
CiPaw.01G195300 Carya illinoinensis HOM05D004359 ORTHO05D005052 4.0e-301 1037.7 703 75.2
CiPaw.02G120800 Carya illinoinensis HOM05D004359 ORTHO05D005052 3.8e-299 1031.2 698 75.9
FvH4_4g01230 Fragaria vesca HOM05D004359 ORTHO05D005052 2.7e-297 1025.0 703 74.1
GSVIVG01018042001 Vitis vinifera HOM05D004359 ORTHO05D005052 1.0e-296 1023.1 702 74.5
Glyma.15G201600 Glycine max HOM05D004359 ORTHO05D005052 3.9e-296 1021.1 703 75.4
RcHm_v2.0_Chr4g0387781 Rosa chinensis HOM05D004359 ORTHO05D005052 1.1e-295 1019.6 704 73.7
FAN12G0664 Fragaria x ananassa HOM05D004359 ORTHO05D005052 1.9e-295 1018.8 706 73.8
Prupe.1G021300 Prunus persica HOM05D004359 ORTHO05D005052 1.1e-293 1013.1 707 72.7
FAN17G0057 Fragaria x ananassa HOM05D004359 ORTHO05D005052 3.1e-293 1011.5 703 73.1
FAN22G1739 Fragaria x ananassa HOM05D004359 ORTHO05D005052 9.0e-293 1010.0 703 73.1
TAR362G1241 Trochodendron aralioides HOM05D004359 ORTHO05D005052 6.4e-291 1003.8 702 72.8
ClCG05G004860 Citrullus lanatus HOM05D004359 ORTHO05D005052 8.4e-291 1003.4 700 73.4
Hma1.2p1_0549F.1_g177000 Hydrangea macrophylla HOM05D004359 ORTHO05D005052 1.9e-290 1002.3 702 72.1
MELO3C006500.2 Cucumis melo HOM05D004359 ORTHO05D005052 1.0e-288 996.5 700 73.1
Dinv44576 Davidia involucrata HOM05D004359 ORTHO05D005052 1.8e-288 995.7 704 71.9
MD16G1199900 Malus domestica HOM05D004359 ORTHO05D005052 3.9e-288 994.6 708 72.0
CsaV3_3G012900 Cucumis sativus L. HOM05D004359 ORTHO05D005052 1.1e-287 993.0 702 72.6
CSS0047348 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 1.5e-287 992.6 702 71.1
Phvul.007G278300 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 1.9e-287 992.3 697 73.6
MD13G1199900 Malus domestica HOM05D004359 ORTHO05D005052 2.5e-287 991.9 708 71.9
Atru.chr4.2362 Acer truncatum HOM05D004359 ORTHO05D005052 1.3e-286 989.6 699 72.2
Thecc.04G238800 Theobroma cacao HOM05D004359 ORTHO05D005052 1.6e-286 989.2 702 72.9
Sed0002276 Sechium edule HOM05D004359 ORTHO05D005052 3.7e-286 988.0 700 71.6
Gohir.A09G219100 Gossypium hirsutum HOM05D004359 ORTHO05D005052 4.8e-286 987.6 699 72.8
CSS0047775 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 5.3e-285 984.2 698 70.5
Nn6g34169 Nelumbo nucifera HOM05D004359 ORTHO05D005052 2.4e-282 975.3 702 70.7
Cpa.g.sc44.123 Carica papaya HOM05D004359 ORTHO05D005052 3.5e-281 971.5 702 71.1
CANSAT78G1027 Cannabis sativa HOM05D004359 ORTHO05D005052 7.9e-281 970.3 699 72.4
Potri.010G081800 Populus trichocarpa HOM05D004359 ORTHO05D005052 7.9e-281 970.3 701 69.5
Ciclev10004430m.g Citrus clementina HOM05D004359 ORTHO05D005052 1.8e-280 969.1 699 70.8
Lj3C728G3 Lonicera japonica HOM05D004359 ORTHO05D005052 5.1e-280 967.6 726 68.3
Gorai.006G242500 Gossypium raimondii HOM05D004359 ORTHO05D005052 6.7e-280 967.2 727 69.6
Manes.03G173100 Manihot esculenta HOM05D004359 ORTHO05D005052 1.5e-279 966.1 701 69.9
Haze_11233 Corylus avellana HOM05D004359 ORTHO05D005052 3.3e-279 964.9 677 74.0
PGR004G1328 Punica granatum HOM05D004359 ORTHO05D005052 1.1e-277 959.9 703 70.6
COL.COLO4_21565 Corchorus olitorius HOM05D004359 ORTHO05D005052 1.5e-276 956.1 682 72.6
MSTRG.4062 Avicennia marina HOM05D004359 ORTHO05D005052 1.0e-275 953.4 699 67.8
Sabra10G0061100 Salix brachista HOM05D004359 ORTHO05D005052 1.3e-275 953.0 701 68.6
Actinidia04510 Actinidia chinensis HOM05D004359 ORTHO05D005052 8.4e-275 950.3 733 67.4
Lsat_1_v5_gn_5_104320 Lactuca sativa HOM05D004359 ORTHO05D005052 8.4e-275 950.3 701 68.3
HanXRQChr10g0294741 Helianthus annuus HOM05D004359 ORTHO05D005052 1.9e-274 949.1 701 68.5
vmacro08371 Vaccinium macrocarpon HOM05D004359 ORTHO05D005052 2.1e-273 945.7 730 66.7
Cc03_g04290 Coffea canephora HOM05D004359 ORTHO05D005052 3.5e-273 944.9 702 67.9
Rhsim04G0197200 Rhododendron simsii HOM05D004359 ORTHO05D005052 3.5e-273 944.9 779 63.2
Oeu064246.1 Olea europaea HOM05D004359 ORTHO05D005052 7.9e-273 943.7 700 67.4
TWI73G1293 Tripterygium wilfordii HOM05D004359 ORTHO05D005052 2.3e-272 942.2 704 70.2
PGSC0003DMG400006446 Solanum tuberosum HOM05D004359 ORTHO05D005052 4.3e-271 937.9 701 66.8
CAN.G1437.8 Capsicum annuum HOM05D004359 ORTHO05D005052 1.6e-270 936.0 697 67.3
Aqoxy5G00400 Aquilegia oxysepala HOM05D004359 ORTHO05D005052 8.2e-270 933.7 703 68.8
THA.LOC104826064 Tarenaya hassleriana HOM05D004359 ORTHO05D005052 1.5e-268 929.5 706 67.1
ECA234G1583 Erigeron canadensis HOM05D004359 ORTHO05D005052 2.2e-267 925.6 705 66.2
Actinidia40118 Actinidia chinensis HOM05D004359 ORTHO05D005052 2.9e-267 925.2 699 68.7
VMungo0720G0919 Vigna mungo HOM05D004359 ORTHO05D005052 3.8e-267 924.9 700 68.7
Solyc09g082680.3 Solanum lycopersicum HOM05D004359 ORTHO05D005052 6.5e-267 924.1 698 66.6
Migut.N00211 Erythranthe guttata HOM05D004359 ORTHO05D005052 3.2e-266 921.8 702 67.2
Sopen09g031540 Solanum pennellii HOM05D004359 ORTHO05D005052 4.2e-266 921.4 697 66.0
ATR0665G111 Amborella trichopoda HOM05D004359 ORTHO05D005052 2.7e-265 918.7 705 65.8
HanXRQChr16g0513791 Helianthus annuus HOM05D004359 ORTHO05D005052 3.6e-265 918.3 701 65.9
PSO210G2230 Papaver somniferum HOM05D004359 ORTHO05D005052 6.1e-265 917.5 710 67.9
PSO170G6248 Papaver somniferum HOM05D004359 ORTHO05D005052 5.1e-264 914.4 710 67.7
Sp1g03020 Schrenkiella parvula HOM05D004359 ORTHO05D005052 1.5e-263 912.9 704 65.9
Migut.G00384 Erythranthe guttata HOM05D004359 ORTHO05D005052 2.0e-263 912.5 700 66.3
Aa31LG1G20640 Aethionema arabicum HOM05D004359 ORTHO05D005052 1.1e-261 906.7 702 64.8
SGA_v2.0_scaffold191G40427 Striga asiatica HOM05D004359 ORTHO05D005052 1.1e-261 906.7 721 64.6
BcaC05g24462 Brassica carinata HOM05D004359 ORTHO05D005052 2.9e-259 898.7 707 65.2
BolC5t29020H Brassica oleracea HOM05D004359 ORTHO05D005052 3.8e-259 898.3 707 65.1
C05p02410 Brassica napus HOM05D004359 ORTHO05D005052 1.4e-258 896.3 707 65.2
Thhalv10006925m.g Eutrema salsugineum HOM05D004359 ORTHO05D005052 3.2e-258 895.2 705 65.0
BcaC05g24464 Brassica carinata HOM05D004359 ORTHO05D005052 4.2e-258 894.8 706 65.4
Duzib052G0975 Durio zibethinus HOM05D004359 ORTHO05D005052 7.2e-258 894.0 644 72.4
Gohir.D09G221300 Gossypium hirsutum HOM05D004359 ORTHO05D005052 9.4e-258 893.6 654 71.3
A08p37060 Brassica napus HOM05D004359 ORTHO05D005052 1.2e-257 893.3 709 65.3
Carub.0001s0339 Capsella rubella HOM05D004359 ORTHO05D005052 1.0e-256 890.2 700 65.3
DCAR_030686 Daucus carota HOM05D004359 ORTHO05D005052 5.1e-256 887.9 704 64.2
SalBow2G3046 Salvia bowleyana HOM05D004359 ORTHO05D005052 5.1e-256 887.9 698 64.6
CDE07G0702 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 1.5e-255 886.3 706 65.2
Sc19g0003940 Simmondsia chinensis HOM05D004359 ORTHO05D005052 1.5e-255 886.3 681 67.3
CARHR003530 Cardamine hirsuta HOM05D004359 ORTHO05D005052 8.2e-254 880.6 702 65.0
MSTRG.21878 Avicennia marina HOM05D004359 ORTHO05D005052 3.1e-253 878.6 699 63.4
AL1G13800 Arabidopsis lyrata HOM05D004359 ORTHO05D005052 4.5e-252 874.8 700 65.1
SalBow3G0915 Salvia bowleyana HOM05D004359 ORTHO05D005052 7.7e-252 874.0 707 62.4
EL10Ac3g06499 Beta vulgaris HOM05D004359 ORTHO05D005052 6.5e-251 870.9 708 63.7
BolC8t46894H Brassica oleracea HOM05D004359 ORTHO05D005052 3.6e-249 865.1 723 63.3
Os01g0773100 Oryza sativa ssp. japonica HOM05D004359 ORTHO05D005052 3.0e-248 862.1 709 64.5
DCAR_002367 Daucus carota HOM05D004359 ORTHO05D005052 2.6e-247 859.0 703 62.2
SGA_v2.0_scaffold79G25594 Striga asiatica HOM05D004359 ORTHO05D005052 8.2e-246 854.0 697 62.0
Nitab4.5_0002541g0010 Nicotiana tabacum HOM05D004359 ORTHO05D005052 1.8e-245 852.8 703 63.3
Peaxi162Scf00316g00517 Petunia axillaris HOM05D004359 ORTHO05D005052 2.6e-244 849.0 702 61.8
Oeu064245.1 Olea europaea HOM05D004359 ORTHO05D005052 5.9e-244 847.8 675 64.3
AUR62038653 Chenopodium quinoa HOM05D004359 ORTHO05D005052 3.2e-242 842.0 701 61.1
Nitab4.5_0000090g0250 Nicotiana tabacum HOM05D004359 ORTHO05D005052 1.4e-240 836.6 709 61.9
SEGI_41464 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 4.0e-240 835.1 699 62.8
C08p00930 Brassica napus HOM05D004359 ORTHO05D005052 1.2e-239 833.6 717 62.3
DCAR_027243 Daucus carota HOM05D004359 ORTHO05D005052 1.7e-238 829.7 639 66.5
BcaC07g36931 Brassica carinata HOM05D004359 ORTHO05D005052 1.1e-237 827.0 721 61.9
AUR62032000 Chenopodium quinoa HOM05D004359 ORTHO05D005052 7.0e-237 824.3 702 60.7
Eucgr.H03411 Eucalyptus grandis HOM05D004359 ORTHO05D005052 5.4e-229 798.1 549 74.5
Duzib212G0656 Durio zibethinus HOM05D004359 ORTHO05D005052 1.2e-228 797.0 699 61.7
Zm00001eb151770 Zea mays HOM05D004359 ORTHO05D005052 2.1e-225 786.2 708 60.5
Dinv14046 Davidia involucrata HOM05D004359 ORTHO05D005052 2.0e-220 769.6 612 65.7
CSS0018932 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 3.9e-211 738.8 546 69.2
AT1G04200 Arabidopsis thaliana HOM05D004359 ORTHO05D005052 1.2e-209 733.8 616 63.5
Lj6A646G73 Lonicera japonica HOM05D004359 ORTHO05D005052 2.8e-209 732.6 650 61.1
Ah.04g154140 Amaranthus hybridus HOM05D004359 ORTHO05D005052 8.0e-209 731.1 698 56.4
CDE04G1738 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 1.4e-208 730.3 703 57.0
A10p02630 Brassica napus HOM05D004359 ORTHO05D005052 5.2e-208 728.4 706 57.2
CSS0027981 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 9.2e-205 717.6 605 62.8
CSS0020739 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 1.3e-198 697.2 560 64.3
HPP92_015636 Vanilla planifolia HOM05D004359 ORTHO05D005052 1.3e-195 687.2 573 63.5
SMO340G0218 Selaginella moellendorffii HOM05D004359 ORTHO05D005052 1.5e-191 673.7 710 53.1
AagrBONN_evm.TU.Sc2ySwM_228.2874 Anthoceros agrestis HOM05D004359 ORTHO05D005052 2.2e-190 669.8 646 55.7
Zm00001eb370110 Zea mays HOM05D004359 ORTHO05D005052 1.1e-184 651.0 492 68.3
unitig_736.g22459 Utricularia gibba HOM05D004359 ORTHO05D005052 1.4e-173 614.0 694 50.6
Mapoly0021s0008 Marchantia polymorpha HOM05D004359 ORTHO05D005052 1.5e-170 604.0 705 48.5
AUR62033626 Chenopodium quinoa HOM05D004359 ORTHO05D005052 9.1e-144 515.0 602 50.5
CBR_g41568 Chara braunii HOM05D004359 ORTHO05D005052 1.0e-142 511.5 896 38.3
SEGI_08230 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 8.5e-142 508.4 327 78.0
Manes.15G033000 Manihot esculenta HOM05D004359 ORTHO05D005052 2.0e-122 444.1 439 56.5
CSS0049416 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 1.7e-110 404.4 258 76.4
CSS0043956 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 1.1e-109 401.7 261 75.1
SHI00527 Sapria himalayana HOM05D004359 ORTHO05D005052 1.2e-90 338.6 364 50.8
unitig_899.g14876 Utricularia gibba HOM05D004359 ORTHO05D005052 1.7e-78 298.1 495 36.6
BcaC06g35467 Brassica carinata HOM05D004359 ORTHO05D005052 3.8e-73 280.4 324 48.1
Sabra08G0120100 Salix brachista HOM05D004359 ORTHO05D005052 4.0e-59 233.8 544 34.2
BolC5t32353H Brassica oleracea HOM05D004359 ORTHO05D005052 2.8e-52 211.1 288 41.3
FAN17G0101 Fragaria x ananassa HOM05D004359 ORTHO05D005052 5.3e-51 206.8 121 78.5
SEGI_13286 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 9.0e-51 206.1 185 58.9
TPR.G734 Trifolium pratense HOM05D004359 ORTHO05D005052 5.8e-50 203.4 189 61.4
RcHm_v2.0_Chr4g0393601 Rosa chinensis HOM05D004359 ORTHO05D005052 7.6e-42 176.4 137 69.3
SHI00526 Sapria himalayana HOM05D004359 ORTHO05D005052 1.8e-38 165.2 123 69.1
BolC2t09698H Brassica oleracea HOM05D004359 ORTHO05D005052 3.2e-32 144.4 304 33.9
Phvul.007G263800 Phaseolus vulgaris HOM05D004359 ORTHO05D050299 8.8e-30 136.3 320 35.6
SHI00525 Sapria himalayana HOM05D004359 ORTHO05D005052 8.8e-30 136.3 179 43.6
BcaC03g15924 Brassica carinata HOM05D004359 ORTHO05D005052 1.8e-27 128.6 321 32.1
C05p36300 Brassica napus HOM05D004359 ORTHO05D005052 3.8e-25 120.9 108 52.8
BcaC05g27642 Brassica carinata HOM05D004359 ORTHO05D000212 6.5e-25 120.2 141 48.2
Glyma.19G081300 Glycine max HOM05D004359 ORTHO05D005052 2.7e-23 114.8 85 65.9
Hma1.2p1_0549F.1_g177020 Hydrangea macrophylla HOM05D004359 ORTHO05D005052 2.3e-22 111.7 121 52.1
RcHm_v2.0_Chr4g0393611 Rosa chinensis HOM05D004359 ORTHO05D005052 4.5e-18 97.4 88 60.2
FAN13G0820 Fragaria x ananassa HOM05D002804 ORTHO05D003755 7.2e-16 90.1 51 74.5
FAN13G1580 Fragaria x ananassa HOM05D002804 ORTHO05D003755 7.2e-16 90.1 51 74.5
RcHm_v2.0_Chr4g0393591 Rosa chinensis HOM05D004359 ORTHO05D005052 1.6e-15 89.0 46 87.0
Sed0019342 Sechium edule HOM05D004359 ORTHO05D050299 1.3e-12 79.3 57 68.4
HPP92_015629 Vanilla planifolia HOM05D004359 ORTHO05D005052 3.5e-10 71.2 64 48.4
COL.COLO4_15960 Corchorus olitorius HOM05D004359 ORTHO05D005052 4.5e-10 70.9 58 62.1
COL.COLO4_21093 Corchorus olitorius HOM05D004359 ORTHO05D005052 1.5e-08 65.9 37 83.8
Medtr4g025780 Medicago truncatula HOM05D024396 ORTHO05D005052 1.6e-07 62.4 53 66.0
Medtr4g054245 Medicago truncatula HOM05D024396 ORTHO05D005052 1.6e-07 62.4 53 66.0
TPR.G7706 Trifolium pratense HOM05D281668 ORTHO05D412659 1.4e-06 59.3 111 38.7
MCO01G401 Micromonas commoda HOM05D004359 ORTHO05D005052 1.8e-06 58.9 294 27.2
Medtr2g063923 Medicago truncatula HOM05D024396 ORTHO05D005052 3.0e-06 58.2 53 62.3
Medtr2g435660 Medicago truncatula HOM05D024396 ORTHO05D005052 4.0e-06 57.8 53 62.3


User provided reference genes

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