Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G242200 Glycine max HOM05D006795 ORTHO05D008573 1.7e-136 489.2 224 100.0
Glyma.20G151900 Glycine max HOM05D006795 ORTHO05D008573 1.6e-126 456.1 225 93.3
Lj5g0021204 Lotus japonicus HOM05D006795 ORTHO05D008573 7.2e-111 404.1 221 83.3
arahy.Tifrunner.gnm1.ann1.939HGU Arachis hypogaea HOM05D006795 ORTHO05D008573 1.4e-109 399.8 219 83.1
Medtr1g102470 Medicago truncatula HOM05D006795 ORTHO05D008573 1.8e-109 399.4 224 81.2
arahy.Tifrunner.gnm1.ann1.ATT3CU Arachis hypogaea HOM05D006795 ORTHO05D008573 2.3e-109 399.1 219 82.2
TPR.G26107 Trifolium pratense HOM05D006795 ORTHO05D008573 1.2e-102 376.7 229 77.3
Lalb_Chr02g0140771 Lupinus albus HOM05D006795 ORTHO05D008573 1.0e-96 357.1 225 72.4
Manes.06G149000 Manihot esculenta HOM05D006795 ORTHO05D008573 1.8e-93 346.3 227 67.8
Dinv07998 Davidia involucrata HOM05D006795 ORTHO05D008573 3.0e-93 345.5 225 71.1
Haze_13816 Corylus avellana HOM05D006795 ORTHO05D008573 4.0e-93 345.1 222 72.1
Potri.015G132300 Populus trichocarpa HOM05D006795 ORTHO05D008573 1.2e-92 343.6 231 71.4
QL12p039358 Quercus lobata HOM05D006795 ORTHO05D008573 1.2e-92 343.6 228 70.6
Sc13g0008130 Simmondsia chinensis HOM05D006795 ORTHO05D008573 2.0e-92 342.8 227 68.3
Lj8A35T83 Lonicera japonica HOM05D006795 ORTHO05D008573 3.4e-92 342.0 219 72.6
Cpa.g.sc3.258 Carica papaya HOM05D006795 ORTHO05D008573 1.3e-91 340.1 229 70.7
CiPaw.03G097900 Carya illinoinensis HOM05D006795 ORTHO05D008573 6.3e-91 337.8 229 70.7
MD07G1259600 Malus domestica HOM05D006795 ORTHO05D008573 8.3e-91 337.4 217 69.1
PGR042G2278 Punica granatum HOM05D006795 ORTHO05D008573 1.8e-90 336.3 225 69.8
Hund04657 Selenicereus undatus HOM05D006795 ORTHO05D008573 1.8e-90 336.3 230 68.3
CANSAT21G1655 Cannabis sativa HOM05D006795 ORTHO05D008573 2.4e-90 335.9 226 71.2
CAN.G1187.5 Capsicum annuum HOM05D006795 ORTHO05D008573 2.4e-90 335.9 224 68.3
Sabra15G0145100 Salix brachista HOM05D006795 ORTHO05D008573 2.4e-90 335.9 232 69.4
Duzib068G1417 Durio zibethinus HOM05D006795 ORTHO05D008573 5.4e-90 334.7 227 69.2
Peaxi162Scf00132g00138 Petunia axillaris HOM05D006795 ORTHO05D008573 9.2e-90 334.0 237 67.5
COL.COLO4_14197 Corchorus olitorius HOM05D006795 ORTHO05D008573 2.0e-89 332.8 229 67.7
Prupe.2G283700 Prunus persica HOM05D006795 ORTHO05D008573 3.5e-89 332.0 217 70.5
Thecc.03G163300 Theobroma cacao HOM05D006795 ORTHO05D008573 3.5e-89 332.0 228 68.0
Cc02_g03780 Coffea canephora HOM05D006795 ORTHO05D008573 4.5e-89 331.6 218 67.0
MD01G1187300 Malus domestica HOM05D006795 ORTHO05D008573 5.9e-89 331.3 225 67.6
vmacro06760 Vaccinium macrocarpon HOM05D006795 ORTHO05D008573 1.7e-88 329.7 219 69.9
Gohir.A09G178600 Gossypium hirsutum HOM05D006795 ORTHO05D008573 2.3e-88 329.3 224 67.9
Gohir.D09G174200 Gossypium hirsutum HOM05D006795 ORTHO05D008573 2.9e-88 328.9 224 67.9
CSS0024840 Camellia sinensis var. sinensis HOM05D006795 ORTHO05D008573 5.0e-88 328.2 222 68.5
TWI39G0269 Tripterygium wilfordii HOM05D006795 ORTHO05D008573 5.0e-88 328.2 227 69.2
FAN06G0634 Fragaria x ananassa HOM05D001585 ORTHO05D001677 6.6e-88 327.8 221 68.3
FAN06G3003 Fragaria x ananassa HOM05D001585 ORTHO05D001677 6.6e-88 327.8 221 68.3
Actinidia31794 Actinidia chinensis HOM05D006795 ORTHO05D008573 8.6e-88 327.4 225 68.9
Aqoxy7G00570 Aquilegia oxysepala HOM05D006795 ORTHO05D008573 1.5e-87 326.6 229 67.7
FvH4_7g28300 Fragaria vesca HOM05D006795 ORTHO05D008573 5.6e-87 324.7 219 68.0
A02p12140 Brassica napus HOM05D006795 ORTHO05D008573 9.5e-87 323.9 228 63.6
FAN10G2418 Fragaria x ananassa HOM05D006795 ORTHO05D008573 1.2e-86 323.6 216 68.1
Nn1g01176 Nelumbo nucifera HOM05D006795 ORTHO05D008573 1.6e-86 323.2 228 67.5
C02p20240 Brassica napus HOM05D006795 ORTHO05D008573 2.1e-86 322.8 219 65.3
Nitab4.5_0001589g0020 Nicotiana tabacum HOM05D006795 ORTHO05D008573 2.8e-86 322.4 222 66.7
Eucgr.A02872 Eucalyptus grandis HOM05D006795 ORTHO05D008573 3.6e-86 322.0 226 68.6
RcHm_v2.0_Chr1g0375271 Rosa chinensis HOM05D006795 ORTHO05D008573 3.6e-86 322.0 218 66.5
BolC2t08156H Brassica oleracea HOM05D006795 ORTHO05D008573 4.7e-86 321.6 219 64.8
AUR62016086 Chenopodium quinoa HOM05D006795 ORTHO05D008573 8.0e-86 320.9 230 66.1
ClCG11G008970 Citrullus lanatus HOM05D006795 ORTHO05D008573 8.0e-86 320.9 227 67.0
Atru.chr1.614 Acer truncatum HOM05D006795 ORTHO05D008573 1.4e-85 320.1 232 66.8
CsaV3_2G010830 Cucumis sativus L. HOM05D006795 ORTHO05D008573 1.4e-85 320.1 222 66.2
Lsat_1_v5_gn_2_129741 Lactuca sativa HOM05D006795 ORTHO05D008573 1.4e-85 320.1 218 66.5
BcaC03g14579 Brassica carinata HOM05D006795 ORTHO05D008573 1.8e-85 319.7 220 65.5
ECA238G4708 Erigeron canadensis HOM05D006795 ORTHO05D008573 2.3e-85 319.3 220 66.8
Nitab4.5_0000205g0150 Nicotiana tabacum HOM05D006795 ORTHO05D008573 4.0e-85 318.5 222 66.7
TAR636G0045 Trochodendron aralioides HOM05D006795 ORTHO05D008573 1.5e-84 316.6 268 57.8
Psat6g202120 Pisum sativum HOM05D006795 ORTHO05D008573 2.0e-84 316.2 185 79.5
Psat6g202920 Pisum sativum HOM05D006795 ORTHO05D008573 2.0e-84 316.2 185 79.5
Solyc11g072290.3 Solanum lycopersicum HOM05D006795 ORTHO05D008573 2.6e-84 315.8 228 64.9
unitig_0.g1164 Utricularia gibba HOM05D006795 ORTHO05D008573 4.4e-84 315.1 224 66.5
BraA02t06278Z Brassica rapa HOM05D006795 ORTHO05D008573 7.5e-84 314.3 225 63.6
Ciclev10005807m.g Citrus clementina HOM05D006795 ORTHO05D008573 1.3e-83 313.5 226 65.9
EL10Ac3g05773 Beta vulgaris HOM05D006795 ORTHO05D008573 1.7e-83 313.2 233 61.8
BcaB08g35519 Brassica carinata HOM05D006795 ORTHO05D008573 2.9e-83 312.4 219 63.9
THA.LOC104825075 Tarenaya hassleriana HOM05D006795 ORTHO05D008573 2.9e-83 312.4 222 64.9
HPP92_005470 Vanilla planifolia HOM05D006795 ORTHO05D008573 3.7e-83 312.0 225 64.9
Aa31LG3G8130 Aethionema arabicum HOM05D006795 ORTHO05D008573 6.4e-83 311.2 214 63.6
A10p09570 Brassica napus HOM05D006795 ORTHO05D008573 8.3e-83 310.8 224 63.4
BraA10t43032Z Brassica rapa HOM05D006795 ORTHO05D008573 8.3e-83 310.8 224 63.4
Migut.F00416 Erythranthe guttata HOM05D006795 ORTHO05D008573 4.1e-82 308.5 221 64.7
Thhalv10014608m.g Eutrema salsugineum HOM05D006795 ORTHO05D008573 1.6e-81 306.6 222 63.5
PSO478G2429 Papaver somniferum HOM05D006795 ORTHO05D008573 3.5e-81 305.4 225 65.3
PSO782G4689 Papaver somniferum HOM05D006795 ORTHO05D008573 4.6e-81 305.1 225 65.3
Rhsim03G0172800 Rhododendron simsii HOM05D006795 ORTHO05D008573 3.0e-80 302.4 290 53.4
AUR62035033 Chenopodium quinoa HOM05D006795 ORTHO05D008573 8.6e-80 300.8 247 59.5
SEGI_28069 Sequoiadendron giganteum HOM05D006795 ORTHO05D008573 1.5e-79 300.1 220 61.4
Manes.06G139000 Manihot esculenta HOM05D006795 ORTHO05D008573 1.6e-78 296.6 200 67.5
ATR1145G092 Amborella trichopoda HOM05D006795 ORTHO05D008573 6.2e-78 294.7 235 56.2
Sed0014900 Sechium edule HOM05D006795 ORTHO05D008573 1.8e-77 293.1 268 54.9
FAN01G1007 Fragaria x ananassa HOM05D006795 ORTHO05D008573 6.8e-77 291.2 233 60.5
Mapoly0020s0061 Marchantia polymorpha HOM05D006795 ORTHO05D008573 6.8e-77 291.2 219 59.8
MSTRG.119 Avicennia marina HOM05D006795 ORTHO05D008573 3.4e-76 288.9 198 67.7
Ca_10834_v3 Cicer arietinum L. HOM05D006795 ORTHO05D008573 4.4e-76 288.5 224 65.2
VMungo0720G2517 Vigna mungo HOM05D006795 ORTHO05D008573 9.8e-76 287.3 158 84.2
FAN03G1859 Fragaria x ananassa HOM05D001585 ORTHO05D001677 2.4e-74 282.7 193 67.9
GSVIVG01018489001 Vitis vinifera HOM05D006795 ORTHO05D008573 7.0e-74 281.2 198 67.7
FAN03G1183 Fragaria x ananassa HOM05D001585 ORTHO05D001677 1.6e-73 280.0 189 68.3
Gorai.006G196200 Gossypium raimondii HOM05D006795 ORTHO05D008573 1.6e-73 280.0 202 65.8
SGA_v2.0_scaffold2G01112 Striga asiatica HOM05D006795 ORTHO05D008573 6.0e-73 278.1 202 66.3
Oeu021736.1 Olea europaea HOM05D006795 ORTHO05D008573 2.3e-72 276.2 189 68.8
Oeu042417.2 Olea europaea HOM05D006795 ORTHO05D008573 6.6e-72 274.6 220 61.4
CDE06G1038 Ceratophyllum demersum HOM05D006795 ORTHO05D008573 1.1e-71 273.9 194 64.4
Actinidia03085 Actinidia chinensis HOM05D006795 ORTHO05D008573 1.6e-70 270.0 184 68.5
Ah.13g067570 Amaranthus hybridus HOM05D006795 ORTHO05D008573 6.2e-70 268.1 188 68.6
BcaB05g23990 Brassica carinata HOM05D006795 ORTHO05D008573 2.3e-69 266.2 191 63.4
AT5G51700 Arabidopsis thaliana HOM05D006795 ORTHO05D008573 3.1e-69 265.8 182 65.4
Phvul.007G063300 Phaseolus vulgaris HOM05D006795 ORTHO05D008573 1.2e-68 263.8 141 84.4
Sopen11g029960 Solanum pennellii HOM05D006795 ORTHO05D008573 2.0e-68 263.1 191 65.4
CARHR264540 Cardamine hirsuta HOM05D006795 ORTHO05D008573 9.8e-68 260.8 190 63.2
Carub.0008s1172 Capsella rubella HOM05D006795 ORTHO05D008573 4.9e-67 258.5 181 64.6
SalBow4G0392 Salvia bowleyana HOM05D006795 ORTHO05D008573 1.1e-66 257.3 219 57.5
SalBow4G1076 Salvia bowleyana HOM05D006795 ORTHO05D008573 1.1e-66 257.3 219 57.5
AL8G25950 Arabidopsis lyrata HOM05D006795 ORTHO05D008573 1.9e-66 256.5 182 62.6
SMO146G0237 Selaginella moellendorffii HOM05D006795 ORTHO05D008573 9.2e-66 254.2 215 54.9
Os02g0535400 Oryza sativa ssp. japonica HOM05D006795 ORTHO05D008573 1.2e-65 253.8 187 62.6
Zm00001eb242890 Zea mays HOM05D006795 ORTHO05D008573 1.6e-65 253.4 185 61.1
Sp6g13920 Schrenkiella parvula HOM05D006795 ORTHO05D008573 2.3e-64 249.6 183 62.3
Pp3c14_10540 Physcomitrium patens HOM05D006795 ORTHO05D008573 1.6e-62 243.4 191 56.0
CSS0028605 Camellia sinensis var. sinensis HOM05D006795 ORTHO05D008573 4.0e-61 238.8 221 54.8
TAR629G1442 Trochodendron aralioides HOM05D006795 ORTHO05D008573 5.8e-60 235.0 207 58.9
MCO02G265 Micromonas commoda HOM05D006795 ORTHO05D008573 1.6e-54 216.9 218 48.6
CBR_g32001 Chara braunii HOM05D006795 ORTHO05D008573 4.7e-54 215.3 200 50.5
PGSC0003DMG400027380 Solanum tuberosum HOM05D006795 ORTHO05D008573 4.6e-49 198.7 136 66.2
Zm00001eb181460 Zea mays HOM05D006795 ORTHO05D008573 1.8e-37 160.2 77 83.1
MELO3C008527.2 Cucumis melo HOM05D006795 ORTHO05D008573 8.4e-35 151.4 77 75.3
SMO146G0045 Selaginella moellendorffii HOM05D006795 ORTHO05D008573 6.5e-19 98.6 194 34.5
GSVIVG01018488001 Vitis vinifera HOM05D006795 ORTHO05D008573 8.8e-08 61.6 36 69.4
PRCOL_00002330 Prasinoderma coloniale HOM05D006795 ORTHO05D008573 2.6e-07 60.1 69 40.6


User provided reference genes

Program Settings