Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G240700 Glycine max HOM05D005135 ORTHO05D005810 5.9e-133 477.6 256 100.0
VMungo0720G1039 Vigna mungo HOM05D005135 ORTHO05D005810 7.4e-120 434.1 256 91.4
Phvul.007G065300 Phaseolus vulgaris HOM05D005135 ORTHO05D005810 9.1e-118 427.2 256 91.4
Glyma.20G154000 Glycine max HOM05D005135 ORTHO05D005810 1.4e-113 413.3 256 89.8
Lalb_Chr06g0160891 Lupinus albus HOM05D005135 ORTHO05D005810 9.1e-94 347.4 256 76.2
arahy.Tifrunner.gnm1.ann1.UR3NDK Arachis hypogaea HOM05D005135 ORTHO05D005810 7.7e-93 344.4 256 75.8
arahy.Tifrunner.gnm1.ann1.3G6IEL Arachis hypogaea HOM05D005135 ORTHO05D005810 2.1e-90 336.3 256 74.6
Psat7g169320 Pisum sativum HOM05D005135 ORTHO05D005810 3.0e-89 332.4 250 75.6
Ca_10813_v3 Cicer arietinum L. HOM05D005135 ORTHO05D005810 2.0e-88 329.7 254 72.4
Thecc.03G166900 Theobroma cacao HOM05D005135 ORTHO05D005810 2.6e-88 329.3 257 70.8
Lj5g0000742 Lotus japonicus HOM05D005135 ORTHO05D005810 5.4e-86 321.6 256 72.3
GSVIVG01018448001 Vitis vinifera HOM05D005135 ORTHO05D005810 7.0e-86 321.2 257 70.8
CiPaw.03G100200 Carya illinoinensis HOM05D005135 ORTHO05D005810 9.2e-86 320.9 254 72.4
Medtr1g101945 Medicago truncatula HOM05D005135 ORTHO05D005810 1.6e-85 320.1 249 71.9
Dinv35139 Davidia involucrata HOM05D005135 ORTHO05D005810 5.9e-85 318.2 255 70.6
Duzib084G0614 Durio zibethinus HOM05D005135 ORTHO05D005810 5.9e-85 318.2 257 68.9
VMungo0464G2082 Vigna mungo HOM05D000559 ORTHO05D005810 5.9e-85 318.2 261 70.1
TPR.G17397 Trifolium pratense HOM05D005135 ORTHO05D005810 6.6e-84 314.7 223 77.1
Hma1.2p1_0488F.1_g163940 Hydrangea macrophylla HOM05D005135 ORTHO05D005810 3.3e-83 312.4 255 67.8
Eucgr.K00188 Eucalyptus grandis HOM05D005135 ORTHO05D005810 1.2e-82 310.5 257 70.8
Gohir.A12G262200 Gossypium hirsutum HOM05D005135 ORTHO05D005810 2.8e-82 309.3 257 68.5
Gohir.D12G262900 Gossypium hirsutum HOM05D005135 ORTHO05D005810 4.7e-82 308.5 257 68.1
Gorai.008G281800 Gossypium raimondii HOM05D005135 ORTHO05D005810 8.0e-82 307.8 257 68.1
Duzib068G0893 Durio zibethinus HOM05D005135 ORTHO05D005810 2.3e-81 306.2 257 66.1
Manes.14G031000 Manihot esculenta HOM05D005135 ORTHO05D005810 3.0e-81 305.8 257 67.7
CSS0048110 Camellia sinensis var. sinensis HOM05D005135 ORTHO05D005810 6.8e-81 304.7 254 66.9
vmacro09870 Vaccinium macrocarpon HOM05D005135 ORTHO05D005810 8.9e-81 304.3 254 68.9
Potri.015G135000 Populus trichocarpa HOM05D005135 ORTHO05D005810 3.4e-80 302.4 259 68.0
Actinidia31800 Actinidia chinensis HOM05D005135 ORTHO05D005810 4.4e-80 302.0 256 68.8
MELO3C006858.2 Cucumis melo HOM05D005135 ORTHO05D005810 5.8e-80 301.6 257 66.9
Gohir.D08G104900 Gossypium hirsutum HOM05D005135 ORTHO05D005810 5.8e-80 301.6 257 66.5
ClCG05G007690 Citrullus lanatus HOM05D005135 ORTHO05D005810 1.7e-79 300.1 257 66.5
COL.COLO4_14228 Corchorus olitorius HOM05D005135 ORTHO05D005810 3.7e-79 298.9 257 65.4
CsaV3_3G016630 Cucumis sativus L. HOM05D005135 ORTHO05D005810 5.4e-78 295.0 257 66.1
Oeu030142.1 Olea europaea HOM05D005135 ORTHO05D005810 6.0e-77 291.6 256 66.4
FAN01G0847 Fragaria x ananassa HOM05D005135 ORTHO05D005810 1.0e-76 290.8 255 65.9
Oeu022533.1 Olea europaea HOM05D005135 ORTHO05D005810 2.3e-76 289.7 264 62.9
CAN.G1187.4 Capsicum annuum HOM05D005135 ORTHO05D005810 6.6e-76 288.1 258 66.3
CAN.G1182.3 Capsicum annuum HOM05D005135 ORTHO05D005810 1.1e-75 287.3 250 64.8
Nn1g01287 Nelumbo nucifera HOM05D005135 ORTHO05D005810 1.5e-75 287.0 261 65.9
Gohir.A08G093700 Gossypium hirsutum HOM05D005135 ORTHO05D005810 2.5e-75 286.2 257 63.8
PGSC0003DMG400027379 Solanum tuberosum HOM05D005135 ORTHO05D005810 2.5e-75 286.2 254 66.5
TWI23G0093 Tripterygium wilfordii HOM05D005135 ORTHO05D005810 3.3e-75 285.8 251 65.3
Sopen11g029970 Solanum pennellii HOM05D005135 ORTHO05D005810 1.6e-74 283.5 254 65.7
Sed0024541 Sechium edule HOM05D005135 ORTHO05D005810 3.6e-74 282.3 257 64.6
Sabra15G0147000 Salix brachista HOM05D005135 ORTHO05D005810 8.0e-74 281.2 277 62.5
EL10Ac3g05742 Beta vulgaris HOM05D005135 ORTHO05D005810 1.1e-73 280.8 250 65.6
Solyc11g072300.2 Solanum lycopersicum HOM05D005135 ORTHO05D005810 1.8e-73 280.0 254 65.0
Solyc03g006850.3 Solanum lycopersicum HOM05D005135 ORTHO05D005810 3.1e-73 279.3 256 63.7
Sopen03g002840 Solanum pennellii HOM05D005135 ORTHO05D005810 3.1e-73 279.3 255 63.9
TAR629G2517 Trochodendron aralioides HOM05D005135 ORTHO05D005810 4.0e-73 278.9 258 64.7
FAN10G2880 Fragaria x ananassa HOM05D005135 ORTHO05D005810 5.2e-73 278.5 288 58.0
FAN06G3133 Fragaria x ananassa HOM05D005135 ORTHO05D005810 6.8e-73 278.1 255 63.1
PSO782G0956 Papaver somniferum HOM05D005135 ORTHO05D005810 1.2e-72 277.3 257 63.8
FAN06G4903 Fragaria x ananassa HOM05D005135 ORTHO05D005810 1.5e-72 276.9 255 62.7
Peaxi162Scf00557g00212 Petunia axillaris HOM05D005135 ORTHO05D005810 1.5e-72 276.9 253 64.8
Prupe.2G287200 Prunus persica HOM05D005135 ORTHO05D005810 1.5e-72 276.9 249 65.5
RcHm_v2.0_Chr1g0376221 Rosa chinensis HOM05D005135 ORTHO05D005810 3.4e-72 275.8 254 63.8
unitig_52.g17751 Utricularia gibba HOM05D005135 ORTHO05D005810 3.4e-72 275.8 264 62.5
FAN03G3482 Fragaria x ananassa HOM05D005135 ORTHO05D005810 4.4e-72 275.4 255 63.1
Nitab4.5_0000205g0180 Nicotiana tabacum HOM05D005135 ORTHO05D005810 4.4e-72 275.4 253 65.2
AUR62021268 Chenopodium quinoa HOM05D005135 ORTHO05D005810 4.9e-71 271.9 257 61.9
Ciclev10005677m.g Citrus clementina HOM05D005135 ORTHO05D005810 4.9e-71 271.9 259 61.8
FvH4_7g28720 Fragaria vesca HOM05D005135 ORTHO05D005810 2.4e-70 269.6 249 62.7
Nitab4.5_0001573g0020 Nicotiana tabacum HOM05D005135 ORTHO05D005810 4.1e-70 268.9 248 63.7
Oeu030256.1 Olea europaea HOM05D005135 ORTHO05D005810 1.2e-69 267.3 253 62.1
PGR142G1544 Punica granatum HOM05D005135 ORTHO05D005810 1.6e-69 266.9 256 62.9
PSO478G0331 Papaver somniferum HOM05D005135 ORTHO05D005810 3.5e-69 265.8 256 61.3
MD01G1193100 Malus domestica HOM05D005135 ORTHO05D005810 7.8e-69 264.6 248 63.3
MSTRG.8780 Avicennia marina HOM05D005135 ORTHO05D005810 1.0e-68 264.2 261 59.4
Ah.07g208790 Amaranthus hybridus HOM05D005135 ORTHO05D005810 3.9e-68 262.3 249 61.8
MD00G1004200 Malus domestica HOM05D005135 ORTHO05D005810 3.9e-68 262.3 249 63.5
Sed0023089 Sechium edule HOM05D005135 ORTHO05D005810 3.9e-68 262.3 255 59.6
CDE07G1455 Ceratophyllum demersum HOM05D005135 ORTHO05D005810 6.6e-68 261.5 259 61.0
A03p16010 Brassica napus HOM05D005135 ORTHO05D005810 1.1e-67 260.8 256 60.9
TWI39G0390 Tripterygium wilfordii HOM05D005135 ORTHO05D005810 1.5e-67 260.4 251 62.2
BraA03t10892Z Brassica rapa HOM05D005135 ORTHO05D005810 3.3e-67 259.2 256 61.3
BolC3t14274H Brassica oleracea HOM05D005135 ORTHO05D005810 5.6e-67 258.5 256 60.9
ECA238G2105 Erigeron canadensis HOM05D005135 ORTHO05D005810 1.6e-66 256.9 250 62.0
Sc13g0008230 Simmondsia chinensis HOM05D005135 ORTHO05D005810 1.6e-66 256.9 254 60.6
BcaC01g06140 Brassica carinata HOM05D005135 ORTHO05D005810 2.1e-66 256.5 256 59.8
Rhsim09G0195100 Rhododendron simsii HOM05D000559 ORTHO05D005810 2.1e-66 256.5 229 65.9
SGA_v2.0_scaffold10G05426 Striga asiatica HOM05D005135 ORTHO05D005810 2.1e-66 256.5 269 61.0
C03p18840 Brassica napus HOM05D005135 ORTHO05D005810 6.2e-66 255.0 256 59.4
Migut.F01160 Erythranthe guttata HOM05D005135 ORTHO05D005810 6.2e-66 255.0 254 61.0
Lj1A988G25 Lonicera japonica HOM05D005135 ORTHO05D005810 6.2e-66 255.0 227 68.3
Glyma.16G200500 Glycine max HOM05D005135 ORTHO05D005810 8.1e-66 254.6 256 60.5
HanXRQChr14g0461821 Helianthus annuus HOM05D005135 ORTHO05D005810 1.1e-65 254.2 251 61.4
Rhsim03G0174700 Rhododendron simsii HOM05D000559 ORTHO05D000596 1.8e-65 253.4 255 60.8
Aa31LG3G8280 Aethionema arabicum HOM05D005135 ORTHO05D005810 3.1e-65 252.7 256 59.0
SGA_v2.0_scaffold303G47872 Striga asiatica HOM05D005135 ORTHO05D005810 3.1e-65 252.7 299 54.8
Aqoxy7G00498 Aquilegia oxysepala HOM05D005135 ORTHO05D005810 4.0e-65 252.3 262 60.7
ATR0661G043 Amborella trichopoda HOM05D005135 ORTHO05D005810 3.4e-64 249.2 258 59.7
Lalb_Chr21g0304891 Lupinus albus HOM05D005135 ORTHO05D005810 6.4e-63 245.0 219 66.7
Thhalv10014510m.g Eutrema salsugineum HOM05D005135 ORTHO05D005810 3.2e-62 242.7 260 56.9
BcaB08g35536 Brassica carinata HOM05D005135 ORTHO05D005810 4.1e-62 242.3 259 58.3
Dinv28508 Davidia involucrata HOM05D005135 ORTHO05D005810 5.4e-62 241.9 159 80.5
Sp6g14090 Schrenkiella parvula HOM05D005135 ORTHO05D005810 9.2e-62 241.1 260 56.5
Gohir.D04G141600 Gossypium hirsutum HOM05D005135 ORTHO05D005810 1.6e-61 240.4 158 80.4
PGR042G3048 Punica granatum HOM05D005135 ORTHO05D005810 2.7e-61 239.6 154 84.4
Hund04685 Selenicereus undatus HOM05D005135 ORTHO05D005810 2.7e-61 239.6 257 58.4
FAN03G1115 Fragaria x ananassa HOM05D005135 ORTHO05D005810 1.3e-60 237.3 307 50.2
Carub.0008s1186 Capsella rubella HOM05D005135 ORTHO05D005810 1.7e-60 236.9 261 56.3
Cc02_g03590 Coffea canephora HOM05D005135 ORTHO05D005810 6.6e-60 235.0 255 58.4
CARHR264720 Cardamine hirsuta HOM05D005135 ORTHO05D005810 1.1e-59 234.2 256 55.5
BcaB01g04154 Brassica carinata HOM05D005135 ORTHO05D005810 1.9e-59 233.4 258 57.0
AT5G51840 Arabidopsis thaliana HOM05D005135 ORTHO05D005810 4.3e-59 232.3 259 56.4
Zm00001eb027200 Zea mays HOM05D005135 ORTHO05D005810 1.6e-58 230.3 252 55.6
AL8G26130 Arabidopsis lyrata HOM05D005135 ORTHO05D005810 2.1e-58 229.9 259 56.8
AUR62016060 Chenopodium quinoa HOM05D005135 ORTHO05D005810 2.1e-58 229.9 273 54.2
vmacro06737 Vaccinium macrocarpon HOM05D005135 ORTHO05D005810 6.2e-58 228.4 373 44.5
HPP92_001726 Vanilla planifolia HOM05D005135 ORTHO05D005810 5.2e-57 225.3 254 54.7
Lsat_1_v5_gn_2_130120 Lactuca sativa HOM05D005135 ORTHO05D005810 1.2e-56 224.2 258 56.6
HPP92_001719 Vanilla planifolia HOM05D005135 ORTHO05D005810 1.5e-56 223.8 254 54.3
Actinidia14214 Actinidia chinensis HOM05D005135 ORTHO05D005810 1.3e-55 220.7 192 67.7
Phvul.004G123300 Phaseolus vulgaris HOM05D005135 ORTHO05D005810 1.1e-54 217.6 256 54.3
DCAR_020208 Daucus carota HOM05D005135 ORTHO05D005810 3.2e-54 216.1 220 61.4
AagrBONN_evm.TU.Sc2ySwM_117.1266 Anthoceros agrestis HOM05D005135 ORTHO05D005810 1.3e-47 194.1 286 46.5
Mapoly0096s0072 Marchantia polymorpha HOM05D005135 ORTHO05D005810 3.0e-44 183.0 254 48.4
Potri.012G132832 Populus trichocarpa HOM05D005135 ORTHO05D005810 6.4e-39 165.2 182 57.7
Haze_13791 Corylus avellana HOM05D005135 ORTHO05D005810 8.4e-39 164.9 271 46.9
Pp3c13_17710 Physcomitrium patens HOM05D005135 ORTHO05D005810 1.1e-38 164.5 280 41.4
PGSC0003DMG400024247 Solanum tuberosum HOM05D005135 ORTHO05D005810 3.9e-36 156.0 175 54.9
Actinidia03096 Actinidia chinensis HOM05D005135 ORTHO05D005810 1.5e-35 154.1 196 52.6
Lj8C32T8 Lonicera japonica HOM05D005135 ORTHO05D005810 1.9e-35 153.7 97 82.5
SHI13830 Sapria himalayana HOM05D005135 ORTHO05D005810 2.8e-34 149.8 135 65.2
Peaxi162Scf00192g00520 Petunia axillaris HOM05D005135 ORTHO05D005810 3.7e-34 149.4 207 51.2
CDE04G3520 Ceratophyllum demersum HOM05D005135 ORTHO05D005810 6.2e-34 148.7 191 52.4
AL8G30000 Arabidopsis lyrata HOM05D005135 ORTHO05D005810 5.3e-33 145.6 99 76.8
Lj8A32T30 Lonicera japonica HOM05D005135 ORTHO05D005810 1.8e-28 130.6 181 49.7
Os10g0188400 Oryza sativa ssp. japonica HOM05D005135 ORTHO05D005810 1.5e-19 100.9 66 86.4
Cre16.g661800 Chlamydomonas reinhardtii HOM05D005135 ORTHO05D005810 1.9e-19 100.5 123 46.3
Hund01499 Selenicereus undatus HOM05D000873 ORTHO05D005810 4.3e-19 99.4 105 56.2
Glyma.09G148800 Glycine max HOM05D005135 ORTHO05D005810 3.7e-18 96.3 101 59.4
BcaC04g20628 Brassica carinata HOM05D005135 ORTHO05D005810 6.9e-17 92.0 230 38.7
Hma1.2p1_3202F.1_g333920 Hydrangea macrophylla HOM05D005135 ORTHO05D005810 7.7e-16 88.6 62 77.4
SHI48584 Sapria himalayana HOM05D005135 ORTHO05D005810 1.7e-15 87.4 153 45.1
Potri.012G132766 Populus trichocarpa HOM05D005135 ORTHO05D005810 2.9e-15 86.7 60 75.0
SMO201G0013 Selaginella moellendorffii HOM05D005135 ORTHO05D005810 1.0e-12 78.2 64 67.2
TAR291G0007 Trochodendron aralioides HOM05D005135 ORTHO05D005810 1.8e-12 77.4 142 43.7
Duzib205G1338 Durio zibethinus HOM05D005135 ORTHO05D005810 3.3e-11 73.2 132 38.6
Duzib205G1376 Durio zibethinus HOM05D005135 ORTHO05D005810 2.8e-10 70.1 83 49.4
SEGI_16349 Sequoiadendron giganteum HOM05D056048 ORTHO05D005810 1.1e-09 68.2 176 35.8
CDE04G1613 Ceratophyllum demersum HOM05D005135 ORTHO05D005810 2.4e-09 67.0 40 75.0
Cpa.g.sc4.198 Carica papaya HOM05D005135 ORTHO05D005810 2.0e-08 63.9 91 48.4
PRCOL_00003096 Prasinoderma coloniale HOM05D005135 ORTHO05D005810 2.2e-07 60.5 128 37.5


User provided reference genes

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